Structural Classification of Proteins
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Family: Malic enzyme N-domain

Pfam 00390; decorated with additional structures; includes N-terminal additional subdomains and extra N-terminal strand

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Aminoacid dehydrogenase-like, N-terminal domain [53222]
    core: 3 layers: a/b/a; parallel beta-sheet of 4 strands; 2134
  4. Superfamily: Aminoacid dehydrogenase-like, N-terminal domain [53223]
    link to SUPERFAMILY database - Superfamily
  5. Family: Malic enzyme N-domain [53240]
    Pfam 00390; decorated with additional structures; includes N-terminal additional subdomains and extra N-terminal strand

Protein Domains:

  1. Mitochondrial NAD(P)-dependent malic enzyme [53241]
    1. Human (Homo sapiens) [TaxId: 9606] [53242] (10)
      1. 1pj3 picpicxref
        complexed with fum, mn, nad, pyr
        1. region a:21-279 [94727] picpiclink
        2. region b:1021-1279 [94729] picpiclink
        3. region c:2021-2279 [94731] picpiclink
        4. region d:3021-3279 [94733] picpiclink
      2. 1gz3 picpicxref
        complexed with atp, fum, mn, oxl; mutant
        1. region a:20-279 [83394] picpiclink
        2. region b:20-279 [83396] picpiclink
        3. region c:20-279 [83398] picpiclink
        4. region d:20-279 [83400] picpiclink
      3. 1gz4 picpicxref
        complexed with atp, fum, mn, mse, ttn
        1. region a:23-279 [70795] picpiclink
        2. region b:23-279 [70797] picpiclink
        3. region c:23-279 [70799] picpiclink
        4. region d:23-279 [70801] picpiclink
      4. 1pj2 picpicxref
        complexed with fum, mlt, mn, nai
        1. region a:21-279 [94719] picpiclink
        2. region b:1021-1279 [94721] picpiclink
        3. region c:2021-2279 [94723] picpiclink
        4. region d:3021-3279 [94725] picpiclink
      5. 1pj4 picpicxref
        complexed with atp, fum, mlt, mn
        1. region a:22-279 [94735] picpiclink
        2. region b:1022-1279 [94737] picpiclink
        3. region c:2022-2279 [94739] picpiclink
        4. region d:3022-3279 [94741] picpiclink
      6. 1do8 picpicxref
        complexed with mn, nad, oxl; mutant
        1. region a:21-279 [33937] picpiclink
        2. region b:21-279 [33938] picpiclink
        3. region c:21-279 [33939] picpiclink
        4. region d:21-279 [33940] picpiclink
      7. 1qr6 picpicxref
        complexed with nad; mutant
        1. region a:23-279 [33941] picpiclink
        2. region b:1023-1279 [33942] picpiclink
      8. 1efl picpicxref
        complexed with mg, nad, ttn
        1. region a:21-279 [33943] picpiclink
        2. region b:21-279 [33944] picpiclink
        3. region c:21-279 [33945] picpiclink
        4. region d:21-279 [33946] picpiclink
      9. 1efk picpicxref
        complexed with mak, mo1, nad
        1. region a:21-279 [33947] picpiclink
        2. region b:21-279 [33948] picpiclink
        3. region c:21-279 [33949] picpiclink
        4. region d:21-279 [33950] picpiclink
      10. 1pjl picpicxref
        complexed with lu, mse, nad
        1. region a:23-279 [88124] picpiclink
        2. region b:1023-1279 [88126] picpiclink
        3. region c:2023-2279 [88128] picpiclink
        4. region d:3023-3279 [88130] picpiclink
        5. region e:4023-4279 [88132] picpiclink
        6. region f:5023-5279 [88134] picpiclink
        7. region g:6023-6279 [88136] picpiclink
        8. region h:7023-7279 [88138] picpiclink
    2. Domestic pigeon (Columba livia) [TaxId: 8932] [75253] (1)
      1. 1gq2 picpicxref
        complexed with cl, mn, mse, na, nap, oxl
        1. region a:23-279 [70309] picpiclink
        2. region b:23-279 [70311] picpiclink
        3. region c:23-279 [70313] picpiclink
        4. region d:23-279 [70315] picpiclink
        5. region e:23-279 [70317] picpiclink
        6. region f:23-279 [70319] picpiclink
        7. region g:23-279 [70321] picpiclink
        8. region h:23-279 [70323] picpiclink
        9. region i:23-279 [70325] picpiclink
        10. region j:23-279 [70327] picpiclink
        11. region k:23-279 [70329] picpiclink
        12. region l:23-279 [70331] picpiclink
        13. region m:23-279 [70333] picpiclink
        14. region n:23-279 [70335] picpiclink
        15. region o:23-279 [70337] picpiclink
        16. region p:23-279 [70339] picpiclink
    3. Pig roundworm (Ascaris suum) [TaxId: 6253] [75254] (2)
      1. 1o0s picpicxref
        complexed with nai, ttn
        1. region a:2-295 [86541] picpiclink
        2. region b:2-295 [86543] picpiclink
      2. 1llq picpicxref
        complexed with nad
        1. region a:2-295 [74009] picpiclink
        2. region b:2-295 [74011] picpiclink
  2. Malate oxidoreductase (malic enzyme) [110452]
    1. Thermotoga maritima [TaxId: 2336] [110453] (5)
      SQ Q9WZ12
      1. 1vl6 picpicxref
        Structural genomics target
        1. region a:1-154 [108725] picpiclink
        2. region b:1-154 [108727] picpiclink
        3. region c:1-154 [108729] picpiclink
        4. region d:1-154 [108731] picpiclink
      2. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a2
        complexed with nad, zn
        1. region a:2-154 [136279] picpiclink
      3. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a2
        complexed with nad, zn
        1. region b:2-154 [136281] picpiclink
      4. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a2
        complexed with nad, zn
        1. region c:2-154 [136283] picpiclink
      5. 2hae picpicxrefxrefxrefxref
        automatically matched to d1vl6a2
        complexed with nad, zn
        1. region d:2-154 [136285] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk