Structural Classification of Proteins

Fold: HAD-like

: 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: HAD-like [56783]
3 layers: a/b/a; parallel beta-sheet of 6 strands, order 321456

Superfamilies:

HAD-like [56784] (25)
usually contains an insertion (sub)domain after strand 1
uperfamily
1. Probable phosphatase YrbI [69467] (1)
  the insertion subdomain is a beta-hairpin involved into tetramerisation
  1. Probable phosphatase YrbI [69468]
    1. Haemophilus influenzae, HI1679 [TaxId: 727] [69469] (2)
2. HAD-related [56785] (3)
  the insertion subdomain is a 4-helical bundle
  1. L-2-Haloacid dehalogenase, HAD [56786]
    1. Pseudomonas sp., strain YL [TaxId: 306] [56787] (4)
    2. Xanthobacter autotrophicus [TaxId: 280] [56788] (4)
  2. Hypothetical protein PH0459 [142133]
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [142134] (1)
      SQ O58216 1-230
3. beta-Phosphoglucomutase-like [75173] (9)
  the insertion subdomain is a 4-helical bundle
  1. beta-Phosphoglucomutase [75174]
    1. Lactococcus lactis [TaxId: 1358] [75175] (8)
  2. Phosphatase YniC [110504]
    1. Escherichia coli [TaxId: 562] [110505] (1)
      SQ P77247
  3. Phosphoglycolate phosphatase [142135]
    1. Lactobacillus plantarum [TaxId: 1590] [142136] (1)
      SQ Q88YA8 1-207
  4. N-acylneuraminate-9-phosphatase NANP [142137]
    1. Mouse (Mus musculus) [TaxId: 10090] [142138] (1)
      SQ Q9CPT3 1-247
  5. Hypothetical protein SP2064 [142139]
    1. Streptococcus pneumoniae [TaxId: 1313] [142140] (4)
      SQ Q97NG6 3-206
  6. Hypothetical protein Atu0790 [142141]
    1. Agrobacterium tumefaciens [TaxId: 358] [142142] (1)
      SQ Q8UH93 3-224
  7. Phosphoglycolate phosphatase Gph [142143]
    1. Haemophilus somnus [TaxId: 731] [142144] (2)
      SQ Q0I1W8 1-224
  8. predicted phosphatase SP0104 [142145]
    1. Streptococcus pneumoniae [TaxId: 1313] [142146] (1)
      SQ Q97T51 1-210
  9. Hypothetical protein CT1708 [142147]
    1. Chlorobium tepidum [TaxId: 1097] [142148] (1)
      SQ Q8KBS5 2-229
4. YihX-like [56789] (3)
  the insertion subdomain is a 4-helical bundle
  1. Epoxide hydrolase, N-terminal domain [56790]
    has a lipid phosphatase activity
    1. Mouse (Mus musculus) [TaxId: 10090] [56791] (4)
    2. Human (Homo sapiens) [TaxId: 9606] [102303] (6)
  2. Putative phosphatase YihX [142149]
    1. Escherichia coli [TaxId: 562] [142150] (1)
      SQ P0A8Y3 1-197
5. Phosphonoacetaldehyde hydrolase-like [56792] (2)
  the insertion subdomain is a 4-helical bundle
  1. Phosphonoacetaldehyde hydrolase [56793]
    1. Bacillus cereus [TaxId: 1396] [56794] (6)
      SQ O31156
  2. Putative hydrolase SP0805 [142151]
    1. Streptococcus pneumoniae [TaxId: 1313] [142152] (1)
      SQ Q97RK1 4-190
6. Phosphoserine phosphatase [64511] (2)
  the insertion subdomain is a 4-helical bundle
  1. Phosphoserine phosphatase [64512]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [64513] (6)
    2. Human (Homo sapiens) [TaxId: 9606] [89645] (3)
7. 5'(3')-deoxyribonucleotidase (dNT-2) [82382] (1)
  the insertion subdomain is a 4-helical bundle; dephosphorylates dUMP and dTMP
  1. 5'(3')-deoxyribonucleotidase (dNT-2) [82383]
    1. Human (Homo sapiens) [TaxId: 9606] [82384] (12)
8. Homoserine kinase ThrH [102304] (1)
  the insertion subdomain is a rudiment 4-helical bundle
  1. Homoserine kinase ThrH [102305]
    1. Pseudomonas aeruginosa [TaxId: 287] [102306] (2)
9. Class B acid phosphatase, AphA [102307] (2)
  the insertion subdomain is a helical hairpin
  1. Class B acid phosphatase, AphA [102308]
    1. Escherichia coli [TaxId: 562] [102309] (15)
      SQ P32697 27-237
    2. Salmonella typhimurium [TaxId: 90371] [142153] (12)
      SQ P58683 30-237
10. Hypothetical protein MW1667 (SA1546) [102310] (1)
  the insertion subdomain is multi-helical
  1. Hypothetical protein MW1667 (SA1546) [102311]
    1. Staphylococcus aureus [TaxId: 1280] [102312] (1)
11. phosphatase domain of polynucleotide kinase [82385] (2)
  no insertion subdomains
  1. Polynucleotide kinase, phosphatase domain [82386]
    1. Bacteriophage T4 [TaxId: 10665] [82387] (16)
  2. 5' polynucleotide kinase-3' phosphatase, middle domain [142154]
    1. Mouse (Mus musculus) [TaxId: 10090] [142155] (2)
      SQ Q9JLV6 144-338
12. Predicted hydrolases Cof [82388] (13)
  contains an alpha+beta subdomain inserted into a new site after strand 3
  1. Phosphoglycolate phosphatase, PGPase [82389]
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [82390] (2)
    2. Pyrococcus horikoshii [TaxId: 53953] [117502] (1)
      SQ O50129 # PH1421
  2. Hypothetical protein YwpJ [89646]
    1. Bacillus subtilis [TaxId: 1423] [89647] (1)
  3. Hypothetical protein TM0651 [102313]
    1. Thermotoga maritima [TaxId: 2336] [102314] (1)
  4. Hypothetical protein YidA [102315]
    1. Escherichia coli [TaxId: 562] [102316] (1)
  5. Sugar phosphatase SupH (YbiV) [117503]
    1. Escherichia coli [TaxId: 562] [117504] (3)
      SQ P75792
  6. Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) [117505]
    1. Escherichia coli [TaxId: 562] [117506] (1)
      SQ P76329 4-235
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [142156] (2)
      SQ O58690 1-243
  7. Sugar-phosphate phosphatase BT4131 [142157]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [142158] (3)
      SQ Q8A090 2-261
  8. Phosphomannomutase 2 [142159]
    1. Human (Homo sapiens) [TaxId: 9606] [142160] (2)
      SQ O15305 4-246
  9. Phosphomannomutase 1 [142161]
    1. Human (Homo sapiens) [TaxId: 9606] [142162] (2)
      SQ Q92871 12-256
  10. Sucrose-phosphatase Slr0953 [142163]
    1. Synechocystis sp. pcc 6803 [TaxId: 1148] [142164] (9)
      SQ P74325 1-244
  11. PFL1270w orthologue [142165]
    1. Plasmodium vivax [TaxId: 5855] [142166] (4)
      SQ Q8I5F4 11-293
13. NagD-like [102317] (6)
  duplication: consists of two segment-swapped domains of this fold; this results in the insertion of a circularly permuted domain after strand 3, analogously to the Cof family
  1. Hypothetical protein TM1742 [102318]
    putative NagD protein
    1. Thermotoga maritima [TaxId: 2336] [102319] (2)
  2. Putative phosphatase SMU.1415c [117507]
    1. Streptococcus mutans [TaxId: 1309] [117508] (1)
      SQ Q8DTD6
  3. Hypothetical protein SPy1043 [142167]
    1. Streptococcus pyogenes [TaxId: 1314] [142168] (1)
      SQ Q99ZW4 2-254
  4. NagD [142169]
    1. Escherichia coli [TaxId: 562] [142170] (1)
      SQ P0AF24 1-250
  5. Putative hydrolase SP1407 [142171]
    1. Streptococcus pneumoniae [TaxId: 1313] [142172] (1)
      SQ Q97Q24 3-255
  6. Putative hydrolase EF1188 [142173]
    1. Enterococcus faecalis [TaxId: 1351] [142174] (2)
      SQ Q836C7 4-256
14. Meta-cation ATPase, catalytic domain P [81656] (2)
  interrupted by a large insertion, domain N
  1. Calcium ATPase, catalytic domain P [81655]
    1. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [81654] (17)
      SQ P04191
  2. Cation-transporting ATPase [142175]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [142176] (3)
      SQ O29777 416-434,548-663
15. Trehalose-phosphatase [110506] (1)
  Pfam 02358; contains an insert alpha+beta subdomain; similar overall fold to the Cof family
  1. Trehalose-6-phosphate phosphatase related protein [110507]
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [110508] (1)
      SQ Q9HIW7
16. NLI interacting factor-like phosphatase [110509] (1)
  Pfam 03031; NIF; the insertion subdomain is a 3-stranded beta-sheet;
  1. Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 [110510]
    1. Human (Homo sapiens) [TaxId: 9606] [110511] (2)
      SQ Q9GZU7 76-256
17. Magnesium-dependent phosphatase-1, Mdp1 [117509] (1)
  the insertion subdomain is a 3-stranded beta-sheet different from the NIF family
  1. Magnesium-dependent phosphatase-1, Mdp1 [117510]
    1. Mouse (Mus musculus) [TaxId: 10090] [117511] (2)
      SQ Q9D967
18. Hypothetical protein VC0232 [117512] (1)
  contains a deletion in the common fold; segment-swapped tetramer
  1. Hypothetical protein VC0232 [117513]
    1. Vibrio cholerae [TaxId: 666] [117514] (1)
      SQ Q9KVB4
19. Histidinol phosphatase-like [142177] (3)
  no insertion subdomains
  1. Histidine biosynthesis bifunctional protein HisB, phosphatase domain [142178]
    1. Escherichia coli [TaxId: 562] [142179] (10)
      SQ Q9S5G5 3-163
  2. Hypothetical protein Mll2559 [159532]
    1. Mesorhizobium loti [TaxId: 381] [159533] (1)
      SQ Q98I56 8-216
  3. D,D-heptose 1,7-bisphosphate phosphatase GmhB [159534]
    1. Escherichia coli [TaxId: 562] [159535] (4)
      SQ P63228 4-185
20. MtnX-like [142180] (1)
  Pfam 06888; the insertion subdomain is a rudiment 4-helical bundle
  1. 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX [142181]
    1. Bacillus subtilis [TaxId: 1423] [142182] (2)
      SQ O31667 2-227
21. Pyrimidine 5'-nucleotidase (UMPH-1) [142183] (2)
  Pfam 05822; the insertion subdomain is a rudiment 4-helical bundle
  1. Cytosolic 5'-nucleotidase III [142184]
    1. Human (Homo sapiens) [TaxId: 9606] [142185] (2)
      SQ Q9H0P0 64-336
    2. Mouse (Mus musculus) [TaxId: 10090] [159536] (1)
      SQ Q9D020 7-297
22. Enolase-phosphatase E1 [142186] (2)
  the insertion subdomain is a 4-helical bundle
  1. Protein UTR4 [142187]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142188] (4)
      SQ P32626 17-241
  2. E-1 enzyme [142189]
    1. Human(Homo sapiens) [TaxId: 9606] [142190] (2)
      SQ Q9UHY7 4-256
23. 5' nucleotidase-like [142191] (1)
  Pfam 05761; the insertion domain cosists of 3-helical bundle and a pseudo beta-barrel; contains extra C-terminal long alpha hairpin subdomain (scop_cf 46556)
  1. Cytosolic IMP-GMP specific 5'-nucleotidase [142192]
    1. Legionella pneumophila [TaxId: 446] [142193] (1)
      SQ Q5ZZB6 2-459
24. AF1437-like [159537] (1)
  the insertion subdomain is a rudiment 4-helical bundle; extra alpha-hairpin insertion after strand 3
  1. Hypothetical protein AF1437 [159538]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [159539] (1)
      SQ O28835 1-308
25. BT0820-like [159540] (1)
  PfamB 073209; deletion in the common fold; segment-swapped dimer
  1. Hypothetical protein BT0820 [159541]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [159542] (1)
      SQ Q8A9J5 1-122