Structural Classification of Proteins
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Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain

share a common phosphate-binding site with the NagB-like family; part of sheet is folded upon itself and forms a barrel-like structure like the CoA transferase subunits

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NagB/RpiA/CoA transferase-like [100949]
    core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
  4. Superfamily: NagB/RpiA/CoA transferase-like [100950]
    link to SUPERFAMILY database - Superfamily
  5. Family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain [75176]
    share a common phosphate-binding site with the NagB-like family; part of sheet is folded upon itself and forms a barrel-like structure like the CoA transferase subunits

Protein Domains:

  1. D-ribose-5-phosphate isomerase (RpiA), catalytic domain [75177]
    1. Escherichia coli [TaxId: 562] [75178] (3)
      1. 1o8b picpicxref
        complexed with abf, mse
        1. region a:23-126,a:199-218 [81180] picpiclink
        2. region b:2-126,b:199-218 [81182] picpiclink
      2. 1ks2 picpicxref
        structural genomics
        complexed with mse
        1. region a:2-126,a:199-219 [72908] picpiclink
        2. region b:2-126,b:199-219 [72910] picpiclink
      3. 1lkz picpicxref
        complexed with mse
        1. region a:1-126,a:199-219 [73991] picpiclink
        2. region b:1-126,b:199-219 [73993] picpiclink
    2. Haemophilus influenzae [TaxId: 727] [82391] (1)
      1. 1m0s picpicxref
        structural genomics
        complexed with cit
        1. region a:1-126,a:199-219 [78351] picpiclink
        2. region b:1-126,b:199-219 [78353] picpiclink
    3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [75179] (2)
      1. 1lk5 picpicxref
        complexed with cl, na
        1. region a:1-130,a:211-229 [73960] picpiclink
        2. region b:1-130,b:211-229 [73962] picpiclink
        3. region c:1-130,c:211-229 [73964] picpiclink
        4. region d:1-130,d:211-229 [73966] picpiclink
      2. 1lk7 picpicxref
        complexed with cl, der, na
        1. region a:1-130,a:211-229 [73968] picpiclink
        2. region b:1-130,b:211-229 [73970] picpiclink
        3. region c:1-130,c:211-229 [73972] picpiclink
        4. region d:1-130,d:211-229 [73974] picpiclink
    4. Thermus thermophilus [TaxId: 274] [110512] (3)
      SQ Q72J47
      1. 1uj6 picpicxref
        complexed with a5p, cl
        1. region a:3-131,a:206-227 [107898] picpiclink
      2. 1uj4 picpicxref
        complexed with cl
        1. region a:3-131,a:206-227 [107894] picpiclink
      3. 1uj5 picpicxref
        complexed with cl, r5p
        1. region a:3-131,a:206-227 [107896] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk