Fold: Restriction endonuclease-like

core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a/b) [51349]
   Mainly parallel beta sheets (beta-alpha-beta units)
3. Fold: Restriction endonuclease-like [52979]
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

Superfamilies:

1. Restriction endonuclease-like [52980] (33)
   uperfamily
   1. Restriction endonuclease EcoRI [52981] (1)
      1. Restriction endonuclease EcoRI [52982]
         1. Escherichia coli [TaxId: 562] [52983] (7)
            1. 1ckq
               protein/DNA complex
               1. chain a [33229]
            2. 1cl8
               complexed with prn
               1. chain a [33230]
            3. 1qrh
               protein/DNA complex; mutant
               1. chain a [33232]
            4. 1qri
               protein/DNA complex; mutant
               1. chain a [33233]
            5. 1eri
               protein/DNA complex
               1. chain a [33231]
            6. 1qps
               complexed with mn
               1. chain a [33234]
            7. 1qc9
               1. chain a [33235]
               2. chain b [33236]
               3. chain c [33237]
   2. Restriction endonuclease EcoRV [52984] (1)
      1. Restriction endonuclease EcoRV [52985]
         1. Escherichia coli [TaxId: 562] [52986] (31)
            1. 1sx5
               complexed with mn; mutant
               1. chain a [99023]
               2. chain b [99024]
            2. 1eon
               complexed with acy, cl, tsp
               1. chain a [33238]
               2. chain b [33239]
            3. 1rva
               protein/DNA complex
               1. chain a [33240]
               2. chain b [33241]
            4. 1suz
               complexed with mg, na; mutant
               1. chain a [99013]
               2. chain b [99014]
            5. 1rvc
               protein/DNA complex; complexed with mg
               1. chain a [33242]
               2. chain b [33243]
            6. 1rvb
               protein/DNA complex; complexed with mg
               1. chain a [33244]
               2. chain b [33245]
            7. 1az0
               protein/DNA complex; complexed with ca
               1. chain a [33248]
               2. chain b [33249]
            8. 1eo4
               protein/DNA complex; complexed with acy, mn, tsp
               1. chain a [33246]
               2. chain b [33247]
            9. 1b94
               complexed with ca
               1. chain a [33250]
               2. chain b [33251]
            10. 1b97
                mutant
                1. chain a [33252]
                2. chain b [33253]
            11. 1bsu
                protein/DNA complex; complexed with 5cm, ca, imp
                1. chain a [33258]
                2. chain b [33259]
            12. 1bgb
                protein/DNA complex
                1. chain a [33254]
                2. chain b [33255]
            13. 1eo3
                protein/DNA complex; complexed with acy, mg, tsp
                1. chain a [33260]
                2. chain b [33261]
            14. 2b0d
                automatically matched to d1az0a_
                complexed with ca
                1. region a:2-245 [127634]
            15. 2b0d
                automatically matched to d1az0a_
                complexed with ca
                1. region b:2-245 [127635]
            16. 2b0e
                automatically matched to d1az0a_
                complexed with ca, du
                1. region a:2-245 [127636]
            17. 2b0e
                automatically matched to d1az0a_
                complexed with ca, du
                1. region b:2-245 [127637]
            18. 1bua
                protein/DNA complex; complexed with imp
                1. chain a [33266]
                2. chain b [33267]
            19. 1b95
                mutant
                1. chain a [33264]
                2. chain b [33265]
            20. 1stx
                complexed with mn; mutant
                1. chain a [98989]
                2. chain b [98990]
            21. 1rv5
                protein/DNA complex
                1. chain a [33262]
                2. chain b [33263]
            22. 1bss
                protein/DNA complex; complexed with cl; mutant
                1. chain a [33256]
                2. chain b [33257]
            23. 1sx8
                complexed with mn; mutant
                1. chain a [99025]
                2. chain b [99026]
            24. 1b96
                mutant
                1. chain a [33268]
                2. chain b [33269]
            25. 1eoo
                1. chain a [33270]
                2. chain b [33271]
            26. 1eop
                1. chain a [33272]
                2. chain b [33273]
            27. 1az3
                1. chain a [33276]
                2. chain b [33277]
            28. 1az4
                mutant
                1. chain a [33278]
                2. chain b [33279]
            29. 1rve
                1. chain a [33274]
                2. chain b [33275]
            30. 2rve
                protein/DNA complex
                1. chain a [33283]
                2. chain b [33284]
            31. 4rve
                protein/DNA complex
                1. chain a [33280]
                2. chain b [33281]
                3. chain c [33282]
   3. Restriction endonuclease BamHI [52987] (1)
      1. Restriction endonuclease BamHI [52988]
         1. Bacillus amyloliquefaciens [TaxId: 1390] [52989] (5)
            1. 1bam
               1. chain a [33285]
            2. 1esg
               protein/DNA complex
               1. chain a [33286]
               2. chain b [33287]
            3. 3bam
               protein/DNA complex; complexed with mn
               1. chain a [33288]
               2. chain b [33289]
            4. 2bam
               protein/DNA complex; complexed with ca
               1. chain a [33292]
               2. chain b [33293]
            5. 1bhm
               protein/DNA complex
               1. chain a [33290]
               2. chain b [33291]
   4. Restriction endonuclease BglI [52990] (1)
      1. Restriction endonuclease BglI [52991]
         1. Bacillus subtilis [TaxId: 1423] [52992] (1)
            1. 1dmu
               1. chain a [33294]
   5. Restriction endonuclease BglII [52993] (1)
      1. Restriction endonuclease BglII [52994]
         1. Bacillus subtilis [TaxId: 1423] [52995] (3)
            1. 1dfm
               1. chain a [33295]
               2. chain b [33296]
            2. 1d2i
               1. chain a [33297]
               2. chain b [33298]
            3. 1es8
               free enzyme
               complexed with acy
               1. chain a [33299]
   6. Restriction endonuclease BstyI [102471] (1)
      1. Restriction endonuclease BstyI [102472]
         local sequence similarity to BglII
         1. Geobacillus stearothermophilus [TaxId: 1422] [102473] (5)
            1. 1sdo
               1. chain a [98809]
            2. 2p0j
               automatically matched to d1sdoa_
               1. region a:1-203 [139454]
            3. 2p0j
               automatically matched to d1sdoa_
               1. region b:1-203 [139455]
            4. 1vrr
               automatically matched to d1sdoa_
               1. region a:1-203 [120477]
            5. 1vrr
               automatically matched to d1sdoa_
               1. region b:1-203 [120478]
   7. Restriction endonuclease PvuII [52996] (1)
      1. Restriction endonuclease PvuII [52997]
         1. Proteus vulgaris [TaxId: 585] [52998] (9)
            1. 3pvi
               protein/DNA complex; mutant
               1. chain a [33300]
               2. chain b [33301]
            2. 2pvi
               protein/DNA complex; complexed with cyi
               1. chain a [33302]
               2. chain b [33303]
            3. 1eyu
               protein/DNA complex
               1. chain a [33304]
               2. chain b [33305]
            4. 1k0z
               complexed with pr, so4
               1. chain a [84273]
               2. chain b [84274]
            5. 1pvu
               1. chain a [33306]
               2. chain b [33307]
            6. 1f0o
               protein/DNA complex; complexed with ca
               1. chain a [33308]
               2. chain b [33309]
            7. 1h56
               complexed with mg
               1. chain a [90620]
               2. chain b [90621]
            8. 1pvi
               protein/DNA complex
               1. chain a [33310]
               2. chain b [33311]
            9. 1ni0
               mutant
               1. chain a [80522]
               2. chain b [80523]
               3. chain c [80524]
   8. Cfr10I/Bse634I [52999] (2)
      1. Restriction endonuclease Cfr10I [53000]
         1. Citrobacter freundii [TaxId: 546] [53001] (1)
            1. 1cfr
               1. chain a [33312]
      2. Restriction endonuclease Bse634I [69523]
         1. Bacillus stearothermophilus [TaxId: 1422] [69524] (1)
            1. 1knv
               complexed with act, cl
               1. chain a [68707]
               2. chain b [68708]
   9. Restriction endonuclease MunI [53002] (1)
      1. Restriction endonuclease MunI [53003]
         1. Mycoplasma, unidentified species [TaxId: 2093] [53004] (1)
            1. 1d02
               protein/DNA complex; mutant
               1. chain a [33313]
               2. chain b [33314]
   10. Restriction endonuclease NaeI [53005] (1)
       1. Restriction endonuclease NaeI [53006]
          1. Nocardia aerocolonigenes [TaxId: 68170] [53007] (2)
             1. 1ev7
                1. chain a [33315]
                2. chain b [33316]
             2. 1iaw
                complexed with 17mer DNA
                1. chain a [62126]
                2. chain b [62127]
   11. Restriction endonuclease NgoIV [53008] (1)
       1. Restriction endonuclease NgoIV [53009]
          1. Neisseria gonorrhoeae [TaxId: 485] [53010] (1)
             1. 1fiu
                protein/DNA complex; complexed with acy, mg
                1. chain a [33317]
                2. chain b [33318]
                3. chain c [33319]
                4. chain d [33320]
   12. Restriction endonuclease BsobI [53011] (1)
       1. Restriction endonuclease BsobI [53012]
          1. Bacillus stearothermophilus [TaxId: 1422] [53013] (1)
             1. 1dc1
                protein/DNA complex; complexed with dio
                1. chain a [33321]
                2. chain b [33322]
   13. Restriction endonuclease HincII [69525] (1)
       1. Restriction endonuclease HincII [69526]
          1. Haemophilus influenzae [TaxId: 727] [69527] (12)
             SQ P17743 ! SQ P44413
             1. 1xhv
                complexed with mn
                1. chain a [109597]
                2. chain b [109598]
                3. chain c [109599]
                4. chain d [109600]
             2. 1tx3
                automatically matched to d1kc6a_
                complexed with na
                1. region a:2-258 [119371]
             3. 1tx3
                automatically matched to d1kc6a_
                complexed with na
                1. region b:2-257 [119372]
             4. 1tx3
                automatically matched to d1kc6a_
                complexed with na
                1. region c:2-257 [119373]
             5. 1tx3
                automatically matched to d1kc6a_
                complexed with na
                1. region d:2-257 [119374]
             6. 1kc6
                complexed with na
                1. chain a [68419]
                2. chain b [68420]
                3. chain c [68421]
                4. chain d [68422]
             7. 1tw8
                complexed with ca, na
                1. chain a [107377]
                2. chain b [107378]
                3. chain c [107379]
                4. chain d [107380]
             8. 2gie
                automatically matched to d1kc6a_
                complexed with na
                1. region a:2-258 [135240]
             9. 2gie
                automatically matched to d1kc6a_
                complexed with na
                1. region b:2-257 [135241]
             10. 2gie
                 automatically matched to d1kc6a_
                 complexed with na
                 1. region c:2-258 [135242]
             11. 2gie
                 automatically matched to d1kc6a_
                 complexed with na
                 1. region d:2-257 [135243]
             12. 1xhu
                 1. chain a [109593]
                 2. chain b [109594]
                 3. chain c [109595]
                 4. chain d [109596]
   14. Restriction endonuclease FokI, C-terminal (catalytic) domain [53014] (1)
       1. Restriction endonuclease FokI, C-terminal (catalytic) domain [53015]
          1. Flavobacterium okeanokoites [TaxId: 244] [53016] (2)
             1. 2fok
                1. region a:387-579 [33323]
                2. region b:387-579 [33324]
             2. 1fok
                protein/DNA complex
                1. region a:387-579 [33325]
   15. Type II restriction endonuclease catalytic domain [102474] (1)
       1. Restriction endonuclease EcoRII, C-terminal domain [102475]
          1. Escherichia coli [TaxId: 562] [102476] (1)
             1. 1na6
                mutant
                1. region a:179-398 [91749]
                2. region b:183-402 [91751]
   16. lambda exonuclease [53017] (1)
       1. lambda exonuclease [53018]
          1. Bacteriophage lambda [TaxId: 10710] [53019] (1)
             1. 1avq
                complexed with act, po4; mutant
                1. chain a [33326]
                2. chain b [33327]
                3. chain c [33328]
   17. DNA mismatch repair protein MutH from [53020] (1)
       1. DNA mismatch repair protein MutH from [53021]
          1. Escherichia coli [TaxId: 562] [53022] (2)
             1. 1azo
                complexed with edo
                1. chain a [33329]
             2. 2azo
                1. chain a [33330]
                2. chain b [33331]
   18. Very short patch repair (VSR) endonuclease [53023] (1)
       1. Very short patch repair (VSR) endonuclease [53024]
          1. Escherichia coli [TaxId: 562] [53025] (3)
             1. 1vsr
                complexed with zn
                1. chain a [33332]
             2. 1cw0
                1. chain a [33333]
             3. 1odg
                bound to the reaction product site
                complexed with 5cm, zn
                1. chain a [86849]
   19. TnsA endonuclease, N-terminal domain [53026] (1)
       1. TnsA endonuclease, N-terminal domain [53027]
          a catalytic component of the tn7 transposition system
          1. Escherichia coli [TaxId: 562] [53028] (2)
             SQ P13988
             1. 1t0f
                complexed with the transposition protein TnsC peptide (SQ P05846 505-553), chains C and D
                complexed with mg, mla, mpd
                1. region a:7-168 [112196]
                2. region b:7-168 [112198]
             2. 1f1z
                complexed with cl, mg
                1. region a:8-168 [33334]
                2. region b:8-168 [33335]
   20. Endonuclease I (Holliday junction resolvase) [53029] (1)
       1. Endonuclease I (Holliday junction resolvase) [53030]
          forms dimer by swapping the common core elements
          1. Bacteriophage T7 [TaxId: 10760] [53031] (3)
             1. 1m0d
                complexed with mn, so4
                1. chain a [74354]
                2. chain b [74355]
                3. chain c [74356]
                4. chain d [74357]
             2. 1fzr
                CASP4
                mutant
                1. chain a [33336]
                2. chain b [33337]
                3. chain c [33338]
                4. chain d [33339]
             3. 1m0i
                complexed with so4
                1. chain a [78340]
                2. chain b [78341]
                3. chain c [78342]
                4. chain d [78343]
   21. Hjc-like [64080] (3)
       Pfam 01870
       1. Archaeal Holliday junction resolvase Hjc [64081]
          1. Archaeon Pyrococcus furiosus [TaxId: 2261] [64082] (2)
             1. 1gef
                complexed with so4
                1. chain a [60465]
                2. chain b [60466]
                3. chain d [60467]
                4. chain e [60468]
             2. 1ipi
                1. chain a [66255]
                2. chain b [66256]
          2. Archaeon Sulfolobus solfataricus [TaxId: 2287] [64083] (1)
             1. 1hh1
                1. chain a [61036]
       2. Holliday-junction resolvase SSO1176 [117617]
          1. Sulfolobus solfataricus [TaxId: 2287] [117618] (2)
             SQ Q97YX6
             1. 1ob8
                complexed with edo, so4
                1. chain a [111627]
                2. chain b [111628]
             2. 1ob9
                complexed with edo, fmt
                1. chain a [111629]
   22. XPF/Rad1/Mus81 nuclease [89716] (3)
       1. Putative ATP-dependent RNA helicase Hef, nuclease domain [89717]
          1. Archaeon Pyrococcus furiosus [TaxId: 2261] [89718] (4)
             1. 1j23
                mutant
                1. chain a [84007]
             2. 1j24
                complexed with ca; mutant
                1. chain a [84008]
             3. 1j22
                mutant
                1. chain a [84006]
             4. 1j25
                complexed with mn; mutant
                1. chain a [84009]
       2. DNA excision repair protein ERCC-1 [142445]
          1. Human (Homo sapiens) [TaxId: 9606] [142446] (3)
             SQ P07992 99-227
             1. 2a1i
                complexed with hg
                1. region a:99-227 [125999]
             2. 2jpd
                automatically matched to d2a1ia1
                1. region a:99-219 [148165]
             3. 2jnw
                automatically matched to d2a1ia1
                1. region a:99-214 [148152]
       3. XPF endonuclease [142447]
          1. Aeropyrum pernix [TaxId: 56636] [142448] (6)
             SQ Q9YC15 16-148
             1. 2bgw
                complexed with mg, so4
                1. region a:16-148 [128501]
             2. 2bgw
                automatically matched to 2BGW A:16-148
                complexed with mg, so4
                1. region b:18-148 [128503]
             3. 2bhn
                automatically matched to 2BGW A:16-148
                1. region a:19-148 [128535]
             4. 2bhn
                automatically matched to 2BGW A:16-148
                1. region b:19-148 [128537]
             5. 2bhn
                automatically matched to 2BGW A:16-148
                1. region c:20-147 [128539]
             6. 2bhn
                automatically matched to 2BGW A:16-148
                1. region d:19-148 [128541]
   23. Restriction endonuclease MspI [110624] (1)
       1. Restriction endonuclease MspI [110625]
          1. Moraxella sp. [TaxId: 479] [110626] (3)
             SQ P11405
             1. 1sa3
                complexed with na
                1. chain a [105400]
                2. chain b [105401]
             2. 1yfi
                automatically matched to d1sa3a_
                1. region a:1-262 [123068]
             3. 1yfi
                automatically matched to d1sa3a_
                1. region b:1-262 [123069]
   24. Exodeoxyribonuclease V beta chain (RecB), C-terminal domain [117619] (1)
       related to the RecC domain
       1. Exodeoxyribonuclease V beta chain (RecB), C-terminal domain [117620]
          1. Escherichia coli [TaxId: 562] [117621] (1)
             SQ P08394
             1. 1w36
                complexed with ca
                1. region b:899-1174 [114124]
                2. region e:899-1174 [114132]
   25. Exodeoxyribonuclease V beta chain (RecC), C-terminal domain [117622] (1)
       related to the RecB domain
       1. Exodeoxyribonuclease V beta chain (RecC), C-terminal domain [117623]
          1. Escherichia coli [TaxId: 562] [117624] (1)
             SQ P07648
             1. 1w36
                complexed with ca
                1. region c:818-1121 [114127]
                2. region f:818-1121 [114135]
   26. Hypothetical protein VC1899 [117625] (1)
       contains 2 extra N-terminal domains; d1: [alpha/beta; 3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214567; strand 6 is antiparallel to the rest; topological similarity to the Formyltransferase fold (scop_cf 53327)]; d2: [distorted "winged helix" fold (scop_sf 46785)]
       1. Hypothetical protein VC1899 [117626]
          1. Vibrio cholerae [TaxId: 666] [117627] (1)
             SQ Q9KQU9 # d1 (1-156); d2 (161-249); putative catalytic domain d3 (250-383)
             1. 1xmx
                Structural genomics target
                complexed with fmt, gol, mg
                1. chain a [115568]
   27. Hypothetical protein TT1808 (TTHA1514) [117628] (1)
       Pfam 05685; DUF820
       1. Hypothetical protein TT1808 (TTHA1514) [117629]
          1. Thermus thermophilus [TaxId: 274] [117630] (1)
             SQ Q5SI60
             1. 1wdj
                Structural genomics target
                1. chain a [114536]
                2. chain b [114537]
                3. chain c [114538]
   28. RecU-like [117631] (2)
       Pfam 03838
       1. Recombination protein U (RecU)/PBP related factor A (PrfA) [117632]
          1. Bacillus subtilis [TaxId: 1423] [117633] (1)
             SQ P39792 34-196
             1. 1rzn
                1. chain a [111981]
                2. chain b [111982]
          2. Bacillus stearothermophilus [TaxId: 1422] [117634] (1)
             SQ Q5KXY4 31-198 # 99% sequence identity; Geobacillus kaustophilus TaxID: 1462
             1. 1y1o
                Structural genomics target
                complexed with ni, so4
                1. chain a [116345]
                2. chain b [116346]
                3. chain c [116347]
                4. chain d [116348]
   29. Restriction endonuclease EcoO109IR [117635] (1)
       1. Restriction endonuclease EcoO109IR [117636]
          1. Escherichia coli [TaxId: 562] [117637] (2)
             SQ Q9RPJ3
             1. 1wte
                complexed with na
                1. chain a [114876]
                2. chain b [114877]
             2. 1wtd
                complexed with gol
                1. chain a [114874]
                2. chain b [114875]
   30. MRR-like [117638] (1)
       Pfam 04471
       1. Hypothetical protein AF1548, N-terminal domain [117639]
          1. Archaeoglobus fulgidus [TaxId: 2234] [117640] (1)
             SQ 28724
             1. 1y88
                Structural genomics target
                complexed with cl, so4
                1. region a:3-127 [116561]
   31. PA4535-like [142449] (1)
       contains the PD motif at the beginning of strand 2 and putative catalytic glutamate in strand 3, whereas the putative catalytic lysine is migrated to an alpha-helix
       1. Hypothetical protein PA4535 [142450]
          1. Pseudomonas aeruginosa [TaxId: 287] [142451] (1)
             SQ Q9HVP2 1-209
             1. 1y0k
                1. region a:1-209 [122485]
   32. XisH-like [159601] (2)
       Pfam 08814
       1. FdxN element excision controlling factor protein [159602]
          1. Nostoc punctiforme [TaxId: 272131] [159603] (1)
             1. 2inb
                complexed with cl, gol
                1. region a:5-139 [147738]
          2. Anabaena variabilis [TaxId: 1172] [159604] (2)
             SQ Q3M7W6 4-139
             1. 2okf
                complexed with act, cl, edo
                1. region a:4-139 [148803]
             2. 2okf
                automatically matched to 2OKF A:4-139
                complexed with act, cl, edo
                1. region b:4-139 [148804]
   33. YaeQ-like [159605] (2)
       Pfam 07152; contains extra N- and C-terminal beta-structures forming additional five-stranded beta-sheet; retains the PD motif in the putative active site
       1. Hypothetical protein XAC2396 [159606]
          1. Xanthomonas axonopodis pv. citri [TaxId: 92829] [159607] (2)
             SQ Q8PJY1 4-182
             1. 2g3w
                complexed with act
                1. region a:4-182 [147077]
             2. 2g3w
                automatically matched to 2G3W A:4-182
                complexed with act
                1. region b:4-180 [147078]
       2. Hypothetical protein PSPTO1487 [159608]
          1. Pseudomonas syringae pv. tomato [TaxId: 323] [159609] (1)
             SQ Q886T9 2-180
             1. 2ot9
                complexed with na, srt
                1. region a:2-180 [149009]
2. tRNA-intron endonuclease catalytic domain-like [53032] (1)
   uperfamily
   1. tRNA-intron endonuclease catalytic domain-like [53033] (3)
      1. Tetrameric tRNA splicing endonuclease, C-terminal domain [53034]
         1. Archaeon Methanococcus jannaschii [TaxId: 2190] [53035] (1)
            1. 1a79
               complexed with au, so4
               1. region a:83-179 [33340]
               2. region b:83-179 [33341]
               3. region c:83-179 [33342]
               4. region d:83-179 [33343]
      2. Dimeric tRNA splicing endonuclease, domains 2 and 4 [102477]
         duplication: one subunit consists of two tetrameric tRNA splicing endonuclease subunit-like repeats
         1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102478] (11)
            1. 1r0v
               1. region a:62-139 [96742]
               2. region a:215-305 [96743]
               3. region b:62-139 [96745]
               4. region b:215-305 [96746]
               5. region c:62-139 [96748]
               6. region c:215-305 [96749]
               7. region d:63-139 [96751]
               8. region d:215-305 [96752]
            2. 1r11
               1. region a:61-139 [96772]
               2. region a:215-305 [96773]
               3. region b:61-139 [96776]
               4. region b:215-305 [96777]
            3. 2gjw
               automatically matched to d1r11a1
               complexed with a23, du
               1. region a:64-142 [135295]
            4. 2gjw
               automatically matched to d1r0va2
               complexed with a23, du
               1. region a:218-308 [135296]
            5. 2gjw
               automatically matched to d1r11a1
               complexed with a23, du
               1. region b:63-141 [135299]
            6. 2gjw
               automatically matched to d1r0va2
               complexed with a23, du
               1. region b:217-307 [135300]
            7. 2gjw
               automatically matched to d1r11a1
               complexed with a23, du
               1. region c:63-141 [135303]
            8. 2gjw
               automatically matched to d1r0va2
               complexed with a23, du
               1. region c:217-307 [135304]
            9. 2gjw
               automatically matched to d1r11a1
               complexed with a23, du
               1. region d:64-142 [135307]
            10. 2gjw
                automatically matched to d1r0va2
                complexed with a23, du
                1. region d:218-308 [135308]
            11. 1rlv
                1. region a:61-139 [97652]
                2. region a:215-305 [97653]
                3. region b:61-139 [97656]
                4. region b:215-305 [97657]
      3. tRNA-splicing endonuclease subunit Sen15 [159610]
         1. Human (Homo sapiens) [TaxId: 9606] [159611] (2)
            SQ Q8WW01 36-157
            1. 2gw6
               1. region a:2-123 [147189]
            2. 2gw6
               automatically matched to 2GW6 A:2-123
               1. region b:302-423 [147190]
3. Eukaryotic RPB5 N-terminal domain [53036] (1)
   uperfamily
   1. Eukaryotic RPB5 N-terminal domain [53037] (1)
      1. Eukaryotic RPB5 N-terminal domain [53038]
         1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [53039] (26)
            SQ P20434; part of multichain biological unit
            1. 1dzf
               1. region a:5-143 [33344]
            2. 1twf
               complexed with mn, utp, zn
               1. region e:1-143 [112729]
            3. 1i50
               complexed with mn, zn
               1. region e:1-143 [61758]
            4. 1k83
               complexed with ilx, mn, trx, zn
               1. region e:3-143 [68279]
            5. 1i3q
               complexed with mg, zn
               1. region e:1-143 [61611]
            6. 2nvq
               automatically matched to d1i3qe1
               complexed with dut, mg, zn
               1. region e:2-143 [138638]
            7. 1twc
               complexed with gtp, mn, zn
               1. region e:1-143 [112715]
            8. 1twa
               complexed with atp, mn, zn
               1. region e:1-143 [112700]
            9. 1i6h
               complexed with mg, zn
               1. region e:2-143 [61835]
            10. 1twh
                complexed with atp, mn, zn
                1. region e:1-143 [112755]
            11. 1twg
                complexed with ctp, mn, zn
                1. region e:1-143 [112742]
            12. 2nvy
                automatically matched to d1i3qe1
                complexed with mn, zn
                1. region e:2-143 [138684]
            13. 2e2i
                automatically matched to d1i3qe1
                complexed with dgt, mg, zn
                1. region e:3-143 [131998]
            14. 2e2j
                automatically matched to d1i3qe1
                complexed with g2p, mg, zn
                1. region e:2-143 [132011]
            15. 2b63
                automatically matched to d1i3qe1
                complexed with 5bu, mg, zn
                1. region e:2-143 [127922]
            16. 2ja7
                automatically matched to d1i3qe1
                complexed with bru, mg, tt, zn
                1. region e:2-143 [138195]
            17. 2ja7
                automatically matched to d1i3qe1
                complexed with bru, mg, tt, zn
                1. region q:2-143 [138211]
            18. 2nvx
                automatically matched to d1i3qe1
                complexed with dut, mg, zn
                1. region e:2-143 [138671]
            19. 2nvt
                automatically matched to d1i3qe1
                complexed with g2p, mg, zn
                1. region e:2-143 [138651]
            20. 2ja5
                automatically matched to d1i3qe1
                complexed with bru, mg, zn
                1. region e:2-143 [138163]
            21. 2ja8
                automatically matched to d1i3qe1
                complexed with bru, mg, tt, zn
                1. region e:2-143 [138227]
            22. 2b8k
                automatically matched to d1i3qe1
                complexed with zn
                1. region e:2-143 [128081]
            23. 2ja6
                automatically matched to d1i3qe1
                complexed with bru, mg, tt, zn
                1. region e:2-143 [138179]
            24. 2yu9
                automatically matched to d1i3qe1
                complexed with mg, utp, zn
                1. region e:2-143 [140068]
            25. 2e2h
                automatically matched to d1i3qe1
                complexed with gtp, mg, zn
                1. region e:3-143 [131985]
            26. 2nvz
                automatically matched to d1i3qe1
                complexed with mg, utp, zn
                1. region e:3-143 [138697]
4. TBP-interacting protein-like [159612] (1)
   contains extra C-terminal alpha+beta domain of complex fold with an embeded C2H2 zinc-finger
   1. TBP-interacting protein-like [159613] (1)
      PfamB 059845 (N-terminal domain) and Pfam B059846 (C-terminal region)
      1. TBP-interacting protein [159614]
         1. Thermococcus kodakaraensis [TaxId: 311400] [159615] (1)
            SQ Q9V2W6 1-218
            TK1172
            1. 2czr
               complexed with gol, zn
               1. region a:1-218 [146440]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk