Structural Classification of Proteins
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Protein: Exonuclease domain of prokaryotic DNA polymerase from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Ribonuclease H-like motif [53066]
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily: Ribonuclease H-like [53098]
    consists of one domain of this fold
    link to SUPERFAMILY database - Superfamily
  5. Family: DnaQ-like 3'-5' exonuclease [53118]
    contains Pfam 00929
  6. Protein: Exonuclease domain of prokaryotic DNA polymerase [53119]
    part of Klenow fragment, KF
  7. Species: Escherichia coli [TaxId: 562] [53120]

PDB Entry Domains:

  1. 2kfz picpicxref
    protein/DNA complex; complexed with mg, s, zn
    1. region a:324-518 [33683] picpiclink
  2. 2kfn picpicxref
    protein/DNA complex; complexed with mg, mn, s, zn
    1. region a:324-518 [33682] picpiclink
  3. 1kfs picpicxref
    protein/DNA complex; complexed with mg, zn; mutant
    1. region a:324-518 [33681] picpiclink
  4. 1d8y picpicxref
    1. region a:324-518 [33684] picpiclink
  5. 1d9d picpicxref
    1. region a:324-518 [33688] picpiclink
  6. 1krp picpicxref
    protein/DNA complex; complexed with pst, zn; mutant
    1. region a:324-518 [33685] picpiclink
  7. 1ksp picpicxref
    protein/DNA complex; complexed with pst, zn; mutant
    1. region a:324-518 [33687] picpiclink
  8. 1qsl picpicxref
    complexed with eu; mutant
    1. region a:324-518 [33686] picpiclink
  9. 2kzz picpicxref
    protein/DNA complex; complexed with zn
    1. region a:324-518 [33689] picpiclink
  10. 2kzm picpicxref
    protein/DNA complex; complexed with mn, zn
    1. region a:324-518 [33690] picpiclink
  11. 1d9f picpicxref
    1. region a:324-518 [33691] picpiclink
  12. 1dpi picpicxref
    complexed with zn
    1. region a:326-518 [33692] picpiclink
  13. 1kln picpicxref
    protein/DNA complex; complexed with zn; mutant
    1. region a:324-518 [33693] picpiclink
  14. 1kfd picpicxref
    complexed with ctp
    1. region a:324-518 [33694] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk