Structural Classification of Proteins
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Fold: Caspase-like

3 layers, a/b/a; core: mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Caspase-like [52128]
    3 layers, a/b/a; core: mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest

Superfamilies:

  1. Caspase-like [52129] (2)
    mature protein may be composed of two chains folded in a single domain
    link to SUPERFAMILY database - Superfamily
    1. Caspase catalytic domain [52130] (7)
      1. Apopain (caspase-3, cpp32) [52131]
        1. Human (Homo sapiens) [TaxId: 9606] [52132] (31)
          1. 1nme picpic
            complexed with 158, 159
            1. chain a,b [85874] picpiclink
          2. 1nms picpic
            complexed with 161
            1. chain a [85879] picpiclink
            2. chain b [85880] picpiclink
          3. 1qx3 picpic
            1. chain a [96515] picpiclink
          4. 1rhj picpic
            complexed with pzn
            1. chain a,b [97481] picpiclink
            2. chain c,d [97482] picpiclink
          5. 1cp3 picpic
            complexed with ace
            1. chain a [30992] picpiclink
            2. chain b [30993] picpiclink
          6. 1pau picpic
            complexed with ace
            1. chain a,b [30994] picpiclink
          7. 1rhu picpic
            complexed with 3cy
            1. chain a,b [97489] picpiclink
          8. 1re1 picpic
            complexed with na3
            1. chain a,b [97319] picpiclink
          9. 1rhk picpic
            complexed with ace, fpr
            1. chain a,b [97483] picpiclink
          10. 1rhm picpic
            complexed with na4
            1. chain a,b [97484] picpiclink
            2. chain c,d [97485] picpiclink
          11. 3dek picpic
            automatically matched to d1nmqa_
            complexed with rxd
            1. region a:34-277 [157588] picpiclink
          12. 3dek picpic
            automatically matched to d1nmqa_
            complexed with rxd
            1. region b:34-277 [157589] picpiclink
          13. 3dek picpic
            automatically matched to d1nmqa_
            complexed with rxd
            1. region c:34-277 [157590] picpiclink
          14. 3dek picpic
            automatically matched to d1nmqa_
            complexed with rxd
            1. region d:34-277 [157591] picpiclink
          15. 1nmq picpic
            complexed with 160
            1. chain a [85877] picpiclink
            2. chain b [85878] picpiclink
          16. 3deh picpic
            automatically matched to d1nmqa_
            complexed with rxa
            1. region a:34-277 [157576] picpiclink
          17. 3deh picpic
            automatically matched to d1nmqa_
            complexed with rxa
            1. region b:34-277 [157577] picpiclink
          18. 3deh picpic
            automatically matched to d1nmqa_
            complexed with rxa
            1. region c:34-277 [157578] picpiclink
          19. 3deh picpic
            automatically matched to d1nmqa_
            complexed with rxa
            1. region d:34-276 [157579] picpiclink
          20. 3dej picpic
            automatically matched to d1nmqa_
            complexed with rxc
            1. region a:34-277 [157584] picpiclink
          21. 3dej picpic
            automatically matched to d1nmqa_
            complexed with rxc
            1. region b:34-277 [157585] picpiclink
          22. 3dej picpic
            automatically matched to d1nmqa_
            complexed with rxc
            1. region c:34-277 [157586] picpiclink
          23. 3dej picpic
            automatically matched to d1nmqa_
            complexed with rxc
            1. region d:34-276 [157587] picpiclink
          24. 1gfw picpic
            complexed with msi
            1. chain a,b [30995] picpiclink
          25. 1i3o picpicxref
            complexed to xiap-bir2
            complexed with zn; mutant
            1. chain a,b [61603] picpiclink
            2. chain c,d [61604] picpiclink
          26. 3dei picpic
            automatically matched to d1nmqa_
            complexed with rxb
            1. region a:34-277 [157580] picpiclink
          27. 3dei picpic
            automatically matched to d1nmqa_
            complexed with rxb
            1. region b:34-277 [157581] picpiclink
          28. 3dei picpic
            automatically matched to d1nmqa_
            complexed with rxb
            1. region c:34-277 [157582] picpiclink
          29. 3dei picpic
            automatically matched to d1nmqa_
            complexed with rxb
            1. region d:34-276 [157583] picpiclink
          30. 1rhr picpic
            complexed with cne
            1. chain a,b [97488] picpiclink
          31. 1rhq picpic
            complexed with ace, bop, ptf
            1. chain a,b [97486] picpiclink
            2. chain d,e [97487] picpiclink
      2. Interleukin-1beta converting enzyme (a cysteine protease) [52133]
        1. Human (Homo sapiens) [TaxId: 9606] [52134] (14)
          SQ P29466 125-297,317-404
          1. 1sc3 picpic
            complexed with mli; mutant
            1. chain a,b [105416] picpiclink
          2. 1rwx picpic
            complexed with ybh
            1. chain a,b [111958] picpiclink
          3. 1rwn picpic
            complexed with 4qb
            1. chain a,b [111948] picpiclink
          4. 1rwo picpic
            complexed with bth
            1. chain a,b [111949] picpiclink
          5. 1rwv picpic
            complexed with 5ph
            1. chain a,b [111956] picpiclink
          6. 1rwp picpic
            complexed with hqc
            1. chain a,b [111950] picpiclink
          7. 1sc4 picpic
            mutant
            1. chain a,b [105417] picpiclink
          8. 1rwk picpic
            complexed with 158
            1. chain a,b [111946] picpiclink
          9. 1ibc picpic
            complexed with ace; mutant
            1. chain a,b [30997] picpiclink
          10. 1ice picpic
            1. chain a,b [30996] picpiclink
          11. 1rww picpic
            complexed with oqb
            1. chain a,b [111957] picpiclink
          12. 1rwm picpic
            complexed with q2y
            1. chain a,b [111947] picpiclink
          13. 1bmq picpic
            complexed with mno
            1. chain a,b [30998] picpiclink
          14. 1sc1 picpic
            complexed with cl; mutant
            1. chain a,b [105415] picpiclink
      3. Caspase-1 [102526]
        1. Fall armyworm (Spodoptera frugiperda) [TaxId: 7108] [102527] (1)
          1. 1m72 picpic
            complexed with ace, edo
            1. chain a [91208] picpiclink
            2. chain b [91209] picpiclink
            3. chain c [91210] picpiclink
      4. Caspase-2 [102528]
        1. Human (Homo sapiens) [TaxId: 9606] [102529] (1)
          1. 1pyo picpic
            complexed with ace
            1. chain a,b [95370] picpiclink
            2. chain c,d [95371] picpiclink
      5. Caspase-7 [63961]
        1. Human (Homo sapiens) [TaxId: 9606] [63962] (9)
          SQ P55210 57-303
          1. 1f1j picpic
            complex with acetyl-Asp-Glu-Val-Asp-CHO
            complexed with ace, so4
            1. chain a [59596] picpiclink
            2. chain b [59597] picpiclink
          2. 1i4o picpic
            Complexed to the xiap linker (chains C and D)
            1. chain a [61721] picpiclink
            2. chain b [61722] picpiclink
          3. 1i51 picpic
            complexed to the xiap-bir2 fragment (chains E and F)
            mutant
            1. chain a,b [66029] picpiclink
            2. chain c,d [66030] picpiclink
          4. 1k86 picpic
            mutant
            1. chain a [68288] picpiclink
            2. chain b [68289] picpiclink
          5. 1kmc picpic
            complexed to the xiap-bir2 fragment (chains C and D)
            mutant
            1. chain a [68690] picpiclink
            2. chain b [68691] picpiclink
          6. 1k88 picpic
            mutant
            1. chain a [68290] picpiclink
            2. chain b [68291] picpiclink
          7. 1shl picpic
            complexed with fxn; mutant
            1. chain a [105556] picpiclink
            2. chain b [105557] picpiclink
          8. 1gqf picpic
            complexed with so4
            1. chain a [65470] picpiclink
            2. chain b [65471] picpiclink
          9. 1shj picpic
            complexed with nxn, so4; mutant
            1. chain a [105554] picpiclink
            2. chain b [105555] picpiclink
      6. Caspase-8 [52135]
        1. Human (Homo sapiens) [TaxId: 9606] [52136] (6)
          1. 1qtn picpic
            complexed with ace, dtd
            1. chain a,b [30999] picpiclink
          2. 1f9e picpic
            complexed with phq
            1. chain a,b [59732] picpiclink
            2. chain c,d [59733] picpiclink
            3. chain e,f [59734] picpiclink
            4. chain g,h [59735] picpiclink
            5. chain i,j [59736] picpiclink
            6. chain k,l [59737] picpiclink
          3. 1qdu picpic
            complexed with phq
            1. chain a,b [31000] picpiclink
            2. chain c,d [31001] picpiclink
            3. chain e,f [31002] picpiclink
            4. chain g,h [31003] picpiclink
            5. chain i,j [31004] picpiclink
            6. chain k,l [31005] picpiclink
          4. 2fun picpicxrefxref
            automatically matched to d1i4eb_
            1. region b:2222-2479 [134181] picpiclink
          5. 2fun picpicxrefxref
            automatically matched to d1i4eb_
            1. region d:3222-3477 [134183] picpiclink
          6. 1i4e picpicxref
            complexed to p35
            complexed with ace
            1. chain b [61686] picpiclink
      7. Caspase-9 [69443]
        1. Human (Homo sapiens) [TaxId: 9606] [69444] (2)
          1. 1nw9 picpicxref
            complexed to the xiap-bir3
            complexed with zn
            1. chain b [86294] picpiclink
          2. 1jxq picpic
            complexed with cbz
            1. chain a [67426] picpiclink
            2. chain b [67427] picpiclink
            3. chain c [67428] picpiclink
            4. chain d [67429] picpiclink
    2. Gingipain R (RgpB), N-terminal domain [52137] (1)
      contains extra N-terminal alpha/beta subdomain
      1. Gingipain R (RgpB), N-terminal domain [52138]
        Arginine-specific cysteine proteinase
        1. Porphyromonas gingivalis [TaxId: 837] [52139] (1)
          1. 1cvr picpicxref
            complexed with ca, zn
            1. region a:1-350 [31006] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk