Structural Classification of Proteins
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Protein: Gingipain R (RgpB), N-terminal domain from Porphyromonas gingivalis [TaxId: 837]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Caspase-like [52128]
    3 layers, a/b/a; core: mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest
  4. Superfamily: Caspase-like [52129]
    mature protein may be composed of two chains folded in a single domain
    link to SUPERFAMILY database - Superfamily
  5. Family: Gingipain R (RgpB), N-terminal domain [52137]
    contains extra N-terminal alpha/beta subdomain
  6. Protein: Gingipain R (RgpB), N-terminal domain [52138]
    Arginine-specific cysteine proteinase
  7. Species: Porphyromonas gingivalis [TaxId: 837] [52139]

PDB Entry Domains:

  1. 1cvr picpicxref
    complexed with ca, zn
    1. region a:1-350 [31006] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk