Structural Classification of Proteins
home mail help root up expand collapse

Fold: PLP-dependent transferase-like

main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: PLP-dependent transferase-like [53382]
    main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

Superfamilies:

  1. PLP-dependent transferases [53383] (9)
    link to SUPERFAMILY database - Superfamily
    1. AAT-like [53384] (28)
      1. Aspartate aminotransferase, AAT [53385]
        1. Chicken (Gallus gallus), mitochondria [TaxId: 9031] [53386] (15) picpic
        2. Chicken (Gallus gallus), cytosolic form [TaxId: 9031] [53387] (3) picpic
        3. Pig (Sus scrofa), cytosolic form [TaxId: 9823] [53388] (2) picpic
        4. Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932] [53389] (1) picpic
        5. Escherichia coli [TaxId: 562] [53390] (65) picpic
          SQ P00509
        6. Thermus thermophilus [TaxId: 274] [53391] (9) picpic
        7. Phormidium lapideum [TaxId: 32060] [82481] (1) picpic
        8. Thermotoga maritima [TaxId: 2336] [89754] (1) picpic
          TM1255
      2. Aromatic aminoacid aminotransferase, AroAT [53392]
        1. Paracoccus denitrificans [TaxId: 266] [53393] (12) picpic
        2. Escherichia coli [TaxId: 562] [53394] (1) picpic
        3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [64120] (3) picpic
      3. Tyrosine aminotransferase (TAT) [53395]
        1. Trypanosoma cruzi [TaxId: 5693] [53396] (1) picpic
      4. Histidinol-phosphate aminotransferase HisC [64121]
        1. Escherichia coli [TaxId: 562] [64122] (6) picpic
        2. Thermotoga maritima [TaxId: 2336] [102594] (8) picpic
          SQ Q9X0D0
          TM1040
      5. L-threonine-O-3-phosphate decarboxylase CobD [69563]
        1. Salmonella enterica [TaxId: 28901] [69564] (4) picpic
      6. Low-specificity threonine aldolase [64123]
        1. Thermotoga maritima [TaxId: 2336] [64124] (8) picpic
        2. Leishmania major [TaxId: 5664] [110676] (1) picpic
          SQ O15839
      7. Alliinase [82482]
        cysteine sulphoxide lyase
        1. Garlic (Allium sativum) [TaxId: 4682] [82483] (6) picpic
      8. Glutamine aminotransferase [110677]
        1. Thermus thermophilus [TaxId: 274] [110678] (3) picpic
          SQ Q75WK2
      9. Putative methionine aminotransferase YdbL [110679]
        1. Escherichia coli [TaxId: 562] [110680] (1) picpic
          SQ P77806
      10. Kynurenine--oxoglutarate transaminase I [110681]
        1. Human (Homo sapiens) [TaxId: 9606] [110682] (3) picpic
          SQ Q16773
        2. Yellowfever mosquito (Aedes aegypti) [TaxId: 7159] [142654] (8) picpic
          SQ Q95VY4 61-477
      11. Putative aminotransferase TM1131 [117691]
        1. Thermotoga maritima [TaxId: 2336] [117692] (1) picpic
          SQ Q9X0L5
      12. Putative alanine aminotransferase [117693]
        1. Pyrococcus furiosus [TaxId: 2261] [117694] (1) picpic
          SQ Q9P9M8
      13. Multiple substrate aminotransferase, MSAT [142655]
        1. Thermococcus profundus [TaxId: 49899] [142656] (1) picpic
          SQ Q9V2W5 13-415
      14. Hypothetical aminotransferase PH0207 [142657]
        1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [142658] (1) picpic
          SQ O57946 26-428
      15. Phenylserine aldolase PSALD [142659]
        most similar to the low-specificity threonine aldolase
        1. Pseudomonas putida [TaxId: 303] [142660] (1) picpic
          SQ Q59IT3 7-351
      16. AAT homologue TM1698 [142661]
        1. Thermotoga maritima [TaxId: 2336] [142662] (6) picpic
          SQ Q9X224 4-392
    2. Beta-eliminating lyases [53397] (4)
      1. Tyrosine phenol-lyase [53398]
        1. Citrobacter intermedius [TaxId: 66695] [53399] (2) picpic
        2. Erwinia herbicola [TaxId: 549] [102595] (1) picpic
      2. Tryptophan indol-lyase (tryptophanase) [53400]
        1. Proteus vulgaris [TaxId: 585] [53401] (1) picpic
        2. Escherichia coli [TaxId: 562] [159703] (7) picpic
          SQ P0A853 5-471! SQ Q8XB34 5-471
    3. Pyridoxal-dependent decarboxylase [69565] (3)
      1. DOPA decarboxylase [69566]
        1. Pig (Sus scrofa) [TaxId: 9823] [69567] (2) picpic
      2. Glutamate decarboxylase beta, GadB [102596]
        1. Escherichia coli [TaxId: 562] [102597] (14) picpic
      3. Glutamate decarboxylase alpha, GadA [117695]
        1. Escherichia coli [TaxId: 562] [117696] (1) picpic
          SQ P69908
    4. Cystathionine synthase-like [53402] (24)
      1. Cystathionine beta-lyase, CBL [53403]
        1. Escherichia coli [TaxId: 562] [53404] (6) picpic
        2. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [64125] (1) picpic
      2. Cystathionine gamma-synthase, CGS [53405]
        1. Escherichia coli [TaxId: 562] [53406] (1) picpic
        2. Common tobacco (Nicotiana tabacum) [TaxId: 4097] [53407] (4) picpic
      3. Cystathionine gamma-lyase (CYS3) [82484]
        1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82485] (1) picpic
      4. Methionine gamma-lyase, MGL [64126]
        1. Trichomonas vaginalis, MGL1 [TaxId: 5722] [64127] (2) picpic
        2. Pseudomonas putida [TaxId: 303] [75271] (8) picpic
          SQ P13254
        3. Trichomonas vaginalis, MGL2 [TaxId: 5722] [110683] (1) picpic
          SQ O15565
        4. Citrobacter freundii [TaxId: 546] [142663] (1) picpic
          SQ Q84AR1 2-398
      5. Modulator in mal gene expression, MalY [53408]
        1. Escherichia coli [TaxId: 562] [53409] (1) picpic
      6. Cystalysin [53410]
        PLP-dependent haemolytic enzyme
        1. Treponema denticola [TaxId: 158] [53411] (2) picpic
      7. NifS-like protein/selenocysteine lyase [53412]
        1. Thermotoga maritima [TaxId: 2336] [53413] (2) picpic
        2. Escherichia coli [TaxId: 562] [53414] (5) picpic
          gene product CsdB
      8. Cysteine desulfurase IscS [89755]
        1. Escherichia coli [TaxId: 562] [89756] (1) picpic
      9. Alanine-glyoxylate aminotransferase [89757]
        1. Human (Homo sapiens) [TaxId: 9606] [89758] (2) picpic
        2. Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690] [102598] (1) picpic
          alr1004
        3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [142664] (1) picpic
          SQ P43567 3-384
      10. Subgroup IV putative aspartate aminotransferase [102599]
        1. Thermus thermophilus [TaxId: 274] [102600] (1) picpic
      11. Kynureninase [102601]
        1. Pseudomonas fluorescens [TaxId: 294] [102602] (1) picpic
      12. 2-aminoethylphosphonate transaminase [82486]
        1. Salmonella typhimurium [TaxId: 90371] [82487] (1) picpic
      13. Cystine C-S lyase C-des [53415]
        1. Synechocystis sp. [TaxId: 1143] [53416] (4) picpic
      14. Probable cysteine desulfurase SufS [110684]
        1. Synechocystis sp. PCC 6803 [TaxId: 1148] [110685] (1) picpic
          SQ Q55793 # slr0077
      15. O-acetyl-L-homoserine sulfhydrylase [142665]
        1. Thermus thermophilus [TaxId: 274] [142666] (2) picpic
          SQ Q93I77 1-421
      16. 3-hydroxykynurenine transaminase [142667]
        1. Malaria mosquito (Anopheles gambiae) [TaxId: 7165] [142668] (8) picpic
          SQ Q4LAM2 2-389
    5. GABA-aminotransferase-like [53417] (27)
      formerly omega-Aminoacid:pyruvate aminotransferase-like
      1. Dialkylglycine decarboxylase [53418]
        1. Pseudomonas cepacia [TaxId: 292] [53419] (16) picpic
      2. Glutamate-1-semialdehyde aminomutase (aminotransferase) [53420]
        1. Synechococcus sp., strain GR6 [TaxId: 1131] [53421] (3) picpic
        2. Synechococcus elongatus [TaxId: 32046] [142669] (1) picpic
          SQ Q8DLK8 45-437
      3. Ornithine aminotransferase [53422]
        1. Human (Homo sapiens) [TaxId: 9606] [53423] (10) picpic
        2. Plasmodium yoelii yoelii [TaxId: 73239] [142670] (6) picpic
          SQ Q7RT90 7-410
      4. 4-aminobutyrate aminotransferase, GABA-aminotransferase [53424]
        1. Pig (Sus scrofa) [TaxId: 9823] [53425] (3) picpic
        2. Escherichia coli [TaxId: 562] [110686] (14) picpic
          SQ P22256
      5. Phosphoserine aminotransferase, PSAT [53426]
        1. Bacillus circulans, subsp. alkalophilus [TaxId: 1397] [53427] (4) picpic
          SQ Q59196
        2. Escherichia coli [TaxId: 562] [53428] (2) picpic
        3. Bacillus alcalophilus [TaxId: 1445] [117697] (19) picpic
          SQ Q9RME2
      6. Serine hydroxymethyltransferase [53429]
        1. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [53430] (6) picpic
          SQ P07511
        2. Mouse (Mus musculus) [TaxId: 10090] [53431] (1) picpic
        3. Human (Homo sapiens) [TaxId: 9606] [53432] (1) picpic
        4. Escherichia coli [TaxId: 562] [53433] (2) picpic
        5. Bacillus stearothermophilus [TaxId: 1422] [75272] (7) picpic
        6. Human (Homo sapiens), mitochondrial [TaxId: 9606] [142671] (1) picpic
          SQ P34897 42-504
      7. 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) [53434]
        1. Amycolatopsis mediterranei [TaxId: 33910] [53435] (2) picpic
      8. Aminotransferase ArnB [82488]
        4-amino-4-deoxy-L-arabinose liposaccharide modifying enzyme
        1. Salmonella typhimurium [TaxId: 90371] [82489] (3) picpic
      9. 2-amino-3-ketobutyrate CoA ligase [64128]
        1. Escherichia coli [TaxId: 562] [64129] (1) picpic
      10. PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) [53436]
        1. Escherichia coli [TaxId: 562] [53437] (4) picpic
      11. Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA [53438]
        synonym: 7,8-diaminopelargonic acid synthase
        1. Escherichia coli [TaxId: 562] [53439] (11) picpic
      12. 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) [53440]
        1. Apple (Malus domestica) [TaxId: 3750] [53441] (4) picpic
        2. Tomato (Lycopersicon esculentum) [TaxId: 4081] [64130] (2) picpic
      13. Aminotransferase homolog WlaK (PglE, Cj1121c) [102603]
        1. Campylobacter jejuni [TaxId: 197] [102604] (3) picpic
      14. Spore coat polysaccharide biosynthesis protein C [142672]
        1. Helicobacter pylori [TaxId: 210] [142673] (6) picpic
          SQ O25130 2-372
      15. Acetylornithine/acetyl-lysine aminotransferase ArgD [142674]
        1. Thermus thermophilus [TaxId: 274] [142675] (6) picpic
          SQ Q93R93 9-395
      16. 5-aminolevulinate synthase [142676]
        1. Rhodobacter capsulatus [TaxId: 1061] [142677] (12) picpic
          SQ P18079 2-397
    6. Ornithine decarboxylase major domain [53444] (1)
      1. Ornithine decarboxylase major domain [53445]
        1. Lactobacillus sp., strain 30a [TaxId: 1591] [53446] (2) picpic
    7. Glycine dehydrogenase subunits (GDC-P) [142678] (2)
      Pfam 02347
      1. Glycine dehydrogenase (decarboxylating) subunit 1 [142679]
        1. Thermus thermophilus [TaxId: 274] [142680] (10) picpic
          SQ Q5SKW8 1-437
      2. Glycine dehydrogenase subunit 2 (P-protein) [142681]
        1. Thermus thermophilus [TaxId: 274] [142682] (10) picpic
          SQ Q5SKW7 2-472
    8. SelA-like [142683] (1)
      Pfam 03841
      1. Hypothetical protein MJ0158 [142684]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [142685] (2) picpic
          SQ Q57622 9-374
    9. SepSecS-like [159704] (3)
      Pfam 05889
      1. Selenocysteinyl-tRNA synthase (SepSecS) [159705]
        1. Mouse (Mus musculus) [TaxId: 10090] [159706] (3) picpic
          SQ Q6P6M7 23-467
        2. Archaeoglobus fulgidus [TaxId: 2234] [159707] (4) picpic
          SQ O30207 8-371
        3. Methanococcus maripaludis [TaxId: 39152] [159708] (4) picpic
          SQ Q6LZM9 1-434
  2. PhnH-like [159709] (1)
    single domain protein of similar topology to the core domain of PLP-transferases
    1. PhnH-like [159710] (1)
      Pfam 05845; Bacterial phosphonate metabolism protein (PhnH)
      1. Phosphonate metabolism protein PhnH [159711]
        1. Escherichia coli [TaxId: 562] [159712] (1) picpic
          SQ P16686 12-194
  3. Dhaf3308-like [159713] (1)
    not known to bind PLP cofactor; the extra N-terminal subdomain has a enolase N-terminal domain-like fold (scop_cf 54825)
    1. Dhaf3308-like [159714] (1)
      Pfam 04016; DUF364
      1. Hypothetical protein Dhaf_3308 [159715]
        1. Desulfitobacterium hafniense [TaxId: 49338] [159716] (2) picpic
          SQ Q18YZ7 1-251
Enter search key:
MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk