Structural Classification of Proteins

Family: GABA-aminotransferase-like

: formerly omega-Aminoacid:pyruvate aminotransferase-like

Lineage:

Root: scop
Class: Alpha and beta proteins (a/b) [51349]
Mainly parallel beta sheets (beta-alpha-beta units)
Fold: PLP-dependent transferase-like [53382]
main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest
Superfamily: PLP-dependent transferases [53383]
uperfamily
Family: GABA-aminotransferase-like [53417]
formerly omega-Aminoacid:pyruvate aminotransferase-like

Protein Domains:

Dialkylglycine decarboxylase [53418]
1. Pseudomonas cepacia [TaxId: 292] [53419] (16)
  1. 1zod
    automatically matched to d1dka__
    complexed with cs, mes, na, plp
    1. region a:3-433 [125437]
  2. 1zc9
    automatically matched to d1dka__
    complexed with k, na, pmp
    1. region a:3-433 [124896]
  3. 2dkb
    complexed with mes, na, plp
    1. chain a [34438]
  4. 1d7u
    1. chain a [34439]
  5. 1d7s
    1. chain a [34441]
  6. 1m0q
    complexed with epc, k, na
    1. chain a [78350]
  7. 1d7r
    1. chain a [34440]
  8. 1m0o
    complexed with k, mpm, na
    1. chain a [78348]
  9. 1m0n
    complexed with hcp, k, na
    1. chain a [78347]
  10. 1dgd
    complexed with li, mes, na, plp; mutant
    1. chain a [34443]
  11. 1dka
    complexed with k p, mes, na, plp
    1. chain a [34442]
  12. 1zob
    automatically matched to d1dka__
    complexed with ca, mes, na, plp
    1. region a:3-433 [125436]
  13. 1z3z
    complexed with k, mes, na, plp; mutant
    1. region a:3-433 [124420]
  14. 1m0p
    complexed with elp, k, na
    1. chain a [78349]
  15. 1d7v
    1. chain a [34445]
  16. 1dge
    complexed with mes, plp, rb; mutant
    1. chain a [34444]
Glutamate-1-semialdehyde aminomutase (aminotransferase) [53420]
1. Synechococcus sp., strain GR6 [TaxId: 1131] [53421] (3)
  1. 2gsa
    complexed with plp, pmp; mutant
    1. chain a [34446]
    2. chain b [34447]
  2. 4gsa
    complexed with plp; mutant
    1. chain a [34448]
    2. chain b [34449]
  3. 3gsb
    complexed with gab, pmp; mutant
    1. chain a [34450]
    2. chain b [34451]
2. Synechococcus elongatus [TaxId: 32046] [142669] (1)
  SQ Q8DLK8 45-437
  1. 2cfb
    complexed with plr
    1. region a:19-411 [130368]
Ornithine aminotransferase [53422]
1. Human (Homo sapiens) [TaxId: 9606] [53423] (10)
  1. 2byl
    complexed with plp; mutant
    1. region a:36-439 [129490]
  2. 2byl
    automatically matched to 2BYL A:36-439
    complexed with plp; mutant
    1. region b:36-439 [129491]
  3. 2byl
    automatically matched to 2BYL A:36-439
    complexed with plp; mutant
    1. region c:36-439 [129492]
  4. 2oat
    complexed with pfm
    1. chain a [34452]
    2. chain b [34453]
    3. chain c [34454]
  5. 1gbn
    complexed with gbc, plp
    1. chain a [34455]
    2. chain b [34456]
    3. chain c [34457]
  6. 2can
    complexed with can, plp
    1. chain a [34458]
    2. chain b [34459]
    3. chain c [34460]
  7. 1oat
    complexed with plp
    1. chain a [34461]
    2. chain b [34462]
    3. chain c [34463]
  8. 2byj
    complexed with plp; mutant
    1. region a:36-439 [129483]
  9. 2byj
    automatically matched to 2BYJ A:36-439
    complexed with plp; mutant
    1. region b:36-439 [129484]
  10. 2byj
    automatically matched to 2BYJ A:36-439
    complexed with plp; mutant
    1. region c:36-439 [129485]
2. Plasmodium yoelii yoelii [TaxId: 73239] [142670] (6)
  SQ Q7RT90 7-410
  1. 1z7d
    1. region a:7-410 [124600]
  2. 1z7d
    automatically matched to 1Z7D A:7-410
    1. region b:7-410 [124601]
  3. 1z7d
    automatically matched to 1Z7D A:7-410
    1. region c:7-410 [124602]
  4. 1z7d
    automatically matched to 1Z7D A:7-410
    1. region d:7-410 [124603]
  5. 1z7d
    automatically matched to 1Z7D A:7-410
    1. region e:7-410 [124604]
  6. 1z7d
    automatically matched to 1Z7D A:7-410
    1. region f:7-410 [124605]
4-aminobutyrate aminotransferase, GABA-aminotransferase [53424]
1. Pig (Sus scrofa) [TaxId: 9823] [53425] (3)
  1. 1ohw
    complexed with fe, plp, s, vig
    1. chain a [93035]
    2. chain b [93036]
    3. chain c [93037]
    4. chain d [93038]
  2. 1ohv
    complexed with act, fe, plp, s
    1. chain a [93031]
    2. chain b [93032]
    3. chain c [93033]
    4. chain d [93034]
  3. 1ohy
    complexed with fe, geg, plp, s
    1. chain a [93039]
    2. chain b [93040]
    3. chain c [93041]
    4. chain d [93042]
2. Escherichia coli [TaxId: 562] [110686] (14)
  SQ P22256
  1. 1sff
    complexed with egl, ik2, so4
    1. chain a [105482]
    2. chain b [105483]
    3. chain c [105484]
    4. chain d [105485]
  2. 1szs
    complexed with edo, plp, pmp, so4; mutant
    1. region a:2-426 [119090]
  3. 1szs
    automatically matched to 1SZS A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region b:2-426 [119091]
  4. 1szs
    automatically matched to 1SZS A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region c:2-426 [119092]
  5. 1szs
    automatically matched to 1SZS A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region d:2-426 [119093]
  6. 1sf2
    complexed with egl, plp, so4
    1. chain a [105466]
    2. chain b [105467]
    3. chain c [105468]
    4. chain d [105469]
  7. 1szu
    complexed with edo, plp, pmp, so4; mutant
    1. region a:2-426 [119094]
  8. 1szu
    automatically matched to 1SZU A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region b:2-426 [119095]
  9. 1szu
    automatically matched to 1SZU A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region c:2-426 [119096]
  10. 1szu
    automatically matched to 1SZU A:2-426
    complexed with edo, plp, pmp, so4; mutant
    1. region d:2-426 [119097]
  11. 1szk
    complexed with edo, pmp, so4; mutant
    1. region a:2-426 [119086]
  12. 1szk
    automatically matched to 1SZK A:2-426
    complexed with edo, pmp, so4; mutant
    1. region b:2-426 [119087]
  13. 1szk
    automatically matched to 1SZK A:2-426
    complexed with edo, pmp, so4; mutant
    1. region c:2-426 [119088]
  14. 1szk
    automatically matched to 1SZK A:2-426
    complexed with edo, pmp, so4; mutant
    1. region d:2-426 [119089]
Phosphoserine aminotransferase, PSAT [53426]
1. Bacillus circulans, subsp. alkalophilus [TaxId: 1397] [53427] (4)
  SQ Q59196
  1. 2c0r
    automatically matched to d1bt4a_
    complexed with plp; mutant
    1. region a:2-362 [129604]
  2. 2c0r
    automatically matched to d1bt4a_
    complexed with plp; mutant
    1. region b:2-362 [129605]
  3. 1w3u
    complexed with gol, plp; mutant
    1. chain a [114146]
  4. 1bt4
    complexed with plp; mutant
    1. chain a [34468]
2. Escherichia coli [TaxId: 562] [53428] (2)
  1. 1bjn
    1. chain a [34469]
    2. chain b [34470]
  2. 1bjo
    complexed with gam, plp
    1. chain a [34471]
    2. chain b [34472]
3. Bacillus alcalophilus [TaxId: 1445] [117697] (19)
  SQ Q9RME2
  1. 1w23
    complexed with cl, epe, gol, mg, peg, pig, plp
    1. chain a [114088]
    2. chain b [114089]
  2. 2big
    automatically matched to 2BIE A:3-360
    complexed with cl, mg, peg, pge, plp
    1. region a:3-360 [128585]
  3. 2big
    automatically matched to 2BIE A:3-360
    complexed with cl, mg, peg, pge, plp
    1. region b:3-360 [128586]
  4. 2bie
    complexed with cl, mg, peg, pge, plp
    1. region a:3-360 [128583]
  5. 2bie
    automatically matched to 2BIE A:3-360
    complexed with cl, mg, peg, pge, plp
    1. region b:3-360 [128584]
  6. 2bhx
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128557]
  7. 2bhx
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128558]
  8. 2bi1
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128567]
  9. 2bi1
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128568]
  10. 2bi2
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128569]
  11. 2bi2
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128570]
  12. 2bi3
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128571]
  13. 2bi3
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128572]
  14. 2bi5
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128575]
  15. 2bi5
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128576]
  16. 2bi9
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128577]
  17. 2bi9
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128578]
  18. 2bia
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region a:3-360 [128579]
  19. 2bia
    automatically matched to 2BIE A:3-360
    complexed with 1pe, cl, mg, peg, plp
    1. region b:3-360 [128580]
Serine hydroxymethyltransferase [53429]
1. Rabbit (Oryctolagus cuniculus) [TaxId: 9986] [53430] (6)
  SQ P07511
  1. 1rv3
    complexed with gly, plp, po4; mutant
    1. chain a [105101]
    2. chain b [105102]
  2. 1rvu
    complexed with plp, po4; mutant
    1. chain a [105106]
    2. chain b [105107]
  3. 1rv4
    complexed with plp, po4; mutant
    1. chain a [105103]
    2. chain b [105104]
  4. 1rvy
    complexed with plg, plp, po4; mutant
    1. chain a [105108]
    2. chain b [105109]
  5. 1ls3
    complexed with gly, gol, plp, tgf
    1. chain a [78172]
    2. chain b [78173]
    3. chain c [78174]
    4. chain d [78175]
  6. 1cj0
    complexed with plp; mutant
    1. chain a [34473]
    2. chain b [34474]
2. Mouse (Mus musculus) [TaxId: 10090] [53431] (1)
  1. 1eji
    complexed with plg, thf
    1. chain a [34475]
    2. chain b [34476]
    3. chain c [34477]
    4. chain d [34478]
3. Human (Homo sapiens) [TaxId: 9606] [53432] (1)
  1. 1bj4
    complexed with plp
    1. chain a [34479]
4. Escherichia coli [TaxId: 562] [53433] (2)
  1. 1dfo
    1. chain a [34480]
    2. chain b [34481]
    3. chain c [34482]
    4. chain d [34483]
  2. 1eqb
    complexed with ffo, gly, plp; mutant
    1. chain a [34484]
    2. chain b [34485]
    3. chain c [34486]
    4. chain d [34487]
5. Bacillus stearothermophilus [TaxId: 1422] [75272] (7)
  1. 1kl1
    complexed with gly, plp
    1. chain a [72663]
  2. 1kkj
    complexed with plp
    1. chain a [72647]
  3. 1kkp
    complexed with plp, ser
    1. chain a [72660]
  4. 1yjs
    complexed with gly, plp; mutant
    1. region a:1-405 [123461]
  5. 1yjz
    automatically matched to 1YJY A:1-405
    complexed with plp; mutant
    1. region a:1-405 [123492]
  6. 1yjy
    complexed with plp, ser; mutant
    1. region a:1-405 [123491]
  7. 1kl2
    complexed with fon, gly, plp
    1. chain a [72664]
    2. chain b [72665]
6. Human (Homo sapiens), mitochondrial [TaxId: 9606] [142671] (1)
  SQ P34897 42-504
  1. 2a7v
    1. region a:26-488 [126368]
3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) [53434]
1. Amycolatopsis mediterranei [TaxId: 33910] [53435] (2)
  1. 1b9h
    complexed with plp
    1. chain a [34488]
  2. 1b9i
    complexed with pxg
    1. chain a [34489]
Aminotransferase ArnB [82488]
4-amino-4-deoxy-L-arabinose liposaccharide modifying enzyme
1. Salmonella typhimurium [TaxId: 90371] [82489] (3)
  1. 1mdo
    complexed with mse, pmp
    1. chain a [79013]
  2. 1mdx
    complexed with akg, gol, plp
    1. chain a [79020]
  3. 1mdz
    complexed with plp, scp
    1. chain a [79021]
2-amino-3-ketobutyrate CoA ligase [64128]
1. Escherichia coli [TaxId: 562] [64129] (1)
  1. 1fc4
    complexed with akb, plp
    1. chain a [59760]
    2. chain b [59761]
PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) [53436]
1. Escherichia coli [TaxId: 562] [53437] (4)
  1. 1bs0
    complexed with so4
    1. chain a [34490]
  2. 1dje
    complexed with plp, so4
    1. chain a [34491]
  3. 2g6w
    automatically matched to d1bs0a_
    complexed with llf
    1. region a:2-384 [134719]
  4. 1dj9
    complexed with kam, mg, so4
    1. chain a [34492]
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA [53438]
synonym: 7,8-diaminopelargonic acid synthase
1. Escherichia coli [TaxId: 562] [53439] (11)
  1. 1s0a
    complexed with na; mutant
    1. chain a [98263]
    2. chain b [98264]
  2. 1qj5
    complexed with k, plp
    1. chain a [34493]
    2. chain b [34494]
  3. 1s09
    complexed with na; mutant
    1. chain a [98261]
    2. chain b [98262]
  4. 1mly
    complexed with acz, na, plp
    1. chain a [79290]
    2. chain b [79291]
  5. 1s08
    complexed with na; mutant
    1. chain a [98259]
    2. chain b [98260]
  6. 1s06
    complexed with na; mutant
    1. chain a [98255]
    2. chain b [98256]
  7. 1mgv
    complexed with ioh, na, plp; mutant
    1. chain a [79107]
    2. chain b [79108]
  8. 1mlz
    complexed with na, plp, tza
    1. chain a [79292]
    2. chain b [79293]
  9. 1s07
    complexed with ioh, na, plp; mutant
    1. chain a [98257]
    2. chain b [98258]
  10. 1dty
    1. chain a [34495]
    2. chain b [34496]
  11. 1qj3
    complexed with kap, na, plp
    1. chain a [34497]
    2. chain b [34498]
1-aminocyclopropane-1-carboxylate synthase (ACC synthase) [53440]
1. Apple (Malus domestica) [TaxId: 3750] [53441] (4)
  1. 1m7y
    complexed with mpd, ppg
    1. chain a [78761]
  2. 1m4n
    complexed with aad, mes, plp
    1. chain a [84798]
  3. 1ynu
    automatically matched to d1m7ya_
    complexed with k, ni, py4, trs
    1. region a:4-433 [123762]
  4. 1b8g
    1. chain a [34499]
    2. chain b [34500]
2. Tomato (Lycopersicon esculentum) [TaxId: 4081] [64130] (2)
  1. 1iay
    complexed with avg, plp
    1. chain a [62130]
  2. 1iax
    complexed with plp, so4
    1. chain a [62128]
    2. chain b [62129]
Aminotransferase homolog WlaK (PglE, Cj1121c) [102603]
1. Campylobacter jejuni [TaxId: 197] [102604] (3)
  1. 1o69
    structural genomics
    complexed with bme, x04
    1. chain a [92560]
    2. chain b [92561]
  2. 1o61
    structural genomics
    complexed with act, plp
    1. chain a [92536]
    2. chain b [92537]
  3. 1o62
    structural genomics
    complexed with act, bme
    1. chain a [92538]
    2. chain b [92539]
Spore coat polysaccharide biosynthesis protein C [142672]
1. Helicobacter pylori [TaxId: 210] [142673] (6)
  SQ O25130 2-372
  1. 2fnu
    automatically matched to 2FN6 A:2-372
    complexed with pmp, ud1
    1. region a:2-372 [133831]
  2. 2fnu
    automatically matched to 2FN6 A:2-372
    complexed with pmp, ud1
    1. region b:2-372 [133832]
  3. 2fn6
    complexed with po4
    1. region a:2-372 [133807]
  4. 2fn6
    automatically matched to 2FN6 A:2-372
    complexed with po4
    1. region b:2-372 [133808]
  5. 2fni
    automatically matched to 2FN6 A:2-372
    complexed with plp
    1. region a:2-372 [133816]
  6. 2fni
    automatically matched to 2FN6 A:2-372
    complexed with plp
    1. region b:2-372 [133817]
Acetylornithine/acetyl-lysine aminotransferase ArgD [142674]
1. Thermus thermophilus [TaxId: 274] [142675] (6)
  SQ Q93R93 9-395
  1. 1vef
    complexed with plp
    1. region a:9-395 [120018]
  2. 1vef
    automatically matched to 1VEF A:9-395
    complexed with plp
    1. region b:1009-1395 [120019]
  3. 1wkh
    automatically matched to 1VEF A:9-395
    complexed with ppe
    1. region a:9-395 [120981]
  4. 1wkh
    automatically matched to 1VEF A:9-395
    complexed with ppe
    1. region b:9-395 [120982]
  5. 1wkg
    automatically matched to 1VEF A:9-395
    complexed with poi
    1. region a:9-395 [120979]
  6. 1wkg
    automatically matched to 1VEF A:9-395
    complexed with poi
    1. region b:9-395 [120980]
5-aminolevulinate synthase [142676]
1. Rhodobacter capsulatus [TaxId: 1061] [142677] (12)
  SQ P18079 2-397
  1. 2bwn
    complexed with acy, cl, fmt, sin, so4
    1. region a:2-397 [129368]
  2. 2bwn
    automatically matched to 2BWN A:2-397
    complexed with acy, cl, fmt, sin, so4
    1. region b:2-395 [129369]
  3. 2bwn
    automatically matched to 2BWN A:2-397
    complexed with acy, cl, fmt, sin, so4
    1. region d:2-397 [129370]
  4. 2bwn
    automatically matched to 2BWN A:2-397
    complexed with acy, cl, fmt, sin, so4
    1. region e:2-397 [129371]
  5. 2bwp
    automatically matched to 2BWN A:2-397
    complexed with acy, plg
    1. region a:2-397 [129376]
  6. 2bwp
    automatically matched to 2BWN A:2-397
    complexed with acy, plg
    1. region b:2-396 [129377]
  7. 2bwp
    automatically matched to 2BWN A:2-397
    complexed with acy, plg
    1. region d:2-397 [129378]
  8. 2bwp
    automatically matched to 2BWN A:2-397
    complexed with acy, plg
    1. region e:2-397 [129379]
  9. 2bwo
    automatically matched to 2BWN A:2-397
    complexed with plp, sca
    1. region a:2-397 [129372]
  10. 2bwo
    automatically matched to 2BWN A:2-397
    complexed with plp, sca
    1. region b:2-397 [129373]
  11. 2bwo
    automatically matched to 2BWN A:2-397
    complexed with plp, sca
    1. region d:2-397 [129374]
  12. 2bwo
    automatically matched to 2BWN A:2-397
    complexed with plp, sca
    1. region e:2-397 [129375]