Structural Classification of Proteins
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Family: Glycosylating toxin catalytic domain-like

contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam 04488

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: Nucleotide-diphospho-sugar transferases [53447]
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. Superfamily: Nucleotide-diphospho-sugar transferases [53448]
    link to SUPERFAMILY database - Superfamily
  5. Family: Glycosylating toxin catalytic domain-like [159726]
    contains Glycosyltransferase sugar-binding region containing DXD motif, Pfam 04488

Protein Domains:

  1. Cytotoxin L [159727]
    1. Clostridium sordellii [TaxId: 1505] [159728] (9)
      SQ Q46342 1-542
      1. 2vl8 picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, cts, udp; mutant
        1. region a:1-542 [153266] picpiclink
      2. 2vl8 picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, cts, udp; mutant
        1. region b:3-540 [153267] picpiclink
      3. 2vl8 picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, cts, udp; mutant
        1. region c:1-541 [153268] picpiclink
      4. 2vkh picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, upg; mutant
        1. region a:1-542 [153225] picpiclink
      5. 2vkh picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, upg; mutant
        1. region b:3-540 [153226] picpiclink
      6. 2vkh picpic
        automatically matched to 2VKD A:1-542
        complexed with ca, upg; mutant
        1. region c:1-541 [153227] picpiclink
      7. 2vkd picpic
        complexed with mn, upg; mutant
        1. region a:1-542 [153218] picpiclink
      8. 2vkd picpic
        automatically matched to 2VKD A:1-542
        complexed with mn, upg; mutant
        1. region b:3-540 [153219] picpiclink
      9. 2vkd picpic
        automatically matched to 2VKD A:1-542
        complexed with mn, upg; mutant
        1. region c:1-541 [153220] picpiclink
  2. Alpha-toxin [159729]
    1. Clostridium novyi [TaxId: 1542] [159730] (1)
      SQ Q46149 2-541
      1. 2vk9 picpic
        1. region a:2-541 [153217] picpiclink
  3. Toxin B [159731]
    1. Clostridium difficile [TaxId: 1496] [159732] (2)
      SQ P18177 1-542
      1. 2bvl picpic
        complexed with glc, mn, so4, tbr, udp; mutant
        1. region a:1-542 [146219] picpiclink
      2. 2bvm picpic
        automatically matched to 2BVL A:1-542
        complexed with glc, mn, so4, udp; mutant
        1. region a:1-542 [146220] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk