Structural Classification of Proteins
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Fold: dsRBD-like

alpha-beta(3)-alpha; 2 layers: alpha/beta

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: dsRBD-like [54767]
    alpha-beta(3)-alpha; 2 layers: alpha/beta

Superfamilies:

  1. dsRNA-binding domain-like [54768] (3)
    link to SUPERFAMILY database - Superfamily
    1. Double-stranded RNA-binding domain (dsRBD) [54769] (15)
      Pfam 00035
      1. Double-stranded RNA-binding protein A, second dsRBD [54770]
        1. Xenopus laevis [TaxId: 8355] [54771] (1)
          1. 1di2 picpic
            complexed with dsRNA
            1. chain a [38780] picpiclink
            2. chain b [38781] picpiclink
      2. Staufen, domain III [54772]
        1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [54773] (2)
          1. 1ekz picpic
            1. chain a [38783] picpiclink
          2. 1stu picpic
            CASP1
            1. chain a [38782] picpiclink
      3. dsRNA-dependent protein kinase pkr [54774]
        contains tandem repeat of two dsRBD
        1. Human (Homo sapiens) [TaxId: 9606] [54775] (1)
          1. 1qu6 picpic
            1. region a:1-90 [38784] picpiclink
            2. region a:91-179 [38785] picpiclink
        2. Mouse (Mus musculus) [TaxId: 10090] [143201] (2)
          SQ Q03963 1-85! SQ Q03963 96-181
          1. 1x49 picpic
            1st dsRBD
            1. region a:8-92 [121682] picpiclink
          2. 1x48 picpic
            2nd dsRBD
            1. region a:8-83 [121681] picpiclink
      4. RNase III, C-terminal domain [54776]
        1. Thermotoga maritima [TaxId: 2336] [82644] (1)
          1. 1o0w picpicxref
            CASP5
            1. region a:168-236 [80752] picpiclink
            2. region b:168-237 [80754] picpiclink
        2. Aquifex aeolicus [TaxId: 63363] [102927] (19)
          1. 2nug picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg
            1. region a:151-218 [148453] picpiclink
          2. 2nug picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg
            1. region b:151-220 [148455] picpiclink
          3. 2ez6 picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg; mutant
            1. region a:151-220 [132617] picpiclink
          4. 2ez6 picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg; mutant
            1. region b:151-220 [132619] picpiclink
          5. 1rc7 picpicxref
            complexed with trs; mutant
            1. region a:151-220 [97290] picpiclink
          6. 1yz9 picpicxrefxref
            automatically matched to d1rc7a2
            complexed with so4; mutant
            1. region a:151-220 [124272] picpiclink
          7. 1yz9 picpicxrefxref
            automatically matched to d1rc7a2
            complexed with so4; mutant
            1. region b:151-220 [124274] picpiclink
          8. 1yyk picpicxrefxref
            automatically matched to d1rc7a2
            complexed with trs
            1. region a:151-220 [124219] picpiclink
          9. 1yyk picpicxrefxref
            automatically matched to d1rc7a2
            complexed with trs
            1. region b:151-220 [124221] picpiclink
          10. 2nuf picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg
            1. region a:151-220 [148449] picpiclink
          11. 2nuf picpicxrefxref
            automatically matched to d1rc7a2
            complexed with mg
            1. region b:151-220 [148451] picpiclink
          12. 1yyo picpicxrefxref
            automatically matched to d1rc7a2
            complexed with trs; mutant
            1. region a:151-220 [124245] picpiclink
          13. 1yyo picpicxrefxref
            automatically matched to d1rc7a2
            complexed with trs; mutant
            1. region b:151-220 [124247] picpiclink
          14. 2nue picpicxrefxref
            automatically matched to d1rc7a2
            1. region a:151-220 [148445] picpiclink
          15. 2nue picpicxrefxref
            automatically matched to d1rc7a2
            1. region b:151-220 [148447] picpiclink
          16. 1yyw picpicxrefxrefxrefxref
            automatically matched to d1rc7a2
            1. region a:151-220 [124257] picpiclink
          17. 1yyw picpicxrefxrefxrefxref
            automatically matched to d1rc7a2
            1. region b:151-220 [124259] picpiclink
          18. 1yyw picpicxrefxrefxrefxref
            automatically matched to d1rc7a2
            1. region c:151-219 [124261] picpiclink
          19. 1yyw picpicxrefxrefxrefxref
            automatically matched to d1rc7a2
            1. region d:151-220 [124263] picpiclink
        3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [110913] (3)
          SQ Q02555 364-447 ! SQ Q02555 366-453 ! SQ Q02555 363-443
          1. 1t4o picpic
            1. chain a [106425] picpiclink
            2. chain b [106426] picpiclink
          2. 1t4n picpic
            1. chain a [106424] picpiclink
          3. 1t4l picpic
            1. chain b [106423] picpiclink
      5. staufen homolog 2 [110914]
        1. Mouse (Mus musculus) [TaxId: 10090] [110915] (1)
          SQ Q9D5N7 3-78
          1. 1uhz picpic
            Structural genomics target
            1. chain a [107855] picpiclink
      6. ATP-dependent RNA helicase A, Dhx9 [117901]
        formerly hypothetical protein bab28848
        1. Mouse (Mus musculus) [TaxId: 10090] [117902] (2)
          SQ O70133 4-89, 168-262
          1. 1whq picpic
            Structural genomics target; 1st dsRBD
            1. chain a [114649] picpiclink
          2. 1uil picpic
            Structural genomics target; 2nd dsRDB
            1. chain a [113255] picpiclink
      7. tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) [117903]
        1. Mouse (Mus musculus) [TaxId: 10090] [117904] (1)
          SQ Q9D7B1 350-464
          1. 1whn picpic
            Structural genomics target
            1. chain a [114648] picpiclink
      8. dsRNA-specific editase 1 [143202]
        duplication: contains two dsRBD domains
        1. Rat (Rattus norvegicus) [TaxId: 10116] [143203] (2)
          SQ P51400 231-301! SQ P51400 74-146
          1. 2b7t picpic
            1st dsRBD
            1. region a:1-73 [128055] picpiclink
          2. 2b7v picpic
            2nd dsRBD
            1. region a:1-71 [128056] picpiclink
      9. Interferon-inducible double stranded RNA-dependent protein kinase activator A [143204]
        1. Human (Homo sapiens) [TaxId: 9606] [143205] (1)
          SQ O75569 32-104
          1. 2dix picpic
            1. region a:7-79 [131534] picpiclink
      10. Dgcr8 protein [143206]
        1. Human (Homo sapiens) [TaxId: 9606] [143207] (1)
          SQ Q8WYQ5 502-586
          1. 1x47 picpic
            1. region a:8-92 [121680] picpiclink
      11. TAR RNA-binding protein 2 [143208]
        duplication: contains three dsRBD
        1. Human (Homo sapiens) [TaxId: 9606] [143209] (1)
          SQ Q15633 150-225
          1. 2cpn picpic
            2nd dsRBD
            1. region a:150-225 [130703] picpiclink
      12. Spermatid perinuclear RNA-binding protein [143210]
        1. Human (Homo sapiens) [TaxId: 9606] [143211] (1)
          SQ Q96SI9 378-461
          1. 2dmy picpic
            2nd dsRBD
            1. region a:8-91 [131576] picpiclink
    2. The homologous-pairing domain of Rad52 recombinase [82645] (1)
      contains N- and C-terminal extensions to the common fold involved in the oligomerization
      1. The homologous-pairing domain of Rad52 recombinase [82646]
        forms an undecameric ring structure; binds to ssDNA and dsDNA
        1. Human (Homo sapiens) [TaxId: 9606] [82647] (2)
          1. 1kn0 picpic
            1. chain a [77444] picpiclink
            2. chain b [77445] picpiclink
            3. chain c [77446] picpiclink
            4. chain d [77447] picpiclink
            5. chain e [77448] picpiclink
            6. chain f [77449] picpiclink
            7. chain g [77450] picpiclink
            8. chain h [77451] picpiclink
            9. chain i [77452] picpiclink
            10. chain j [77453] picpiclink
            11. chain k [77454] picpiclink
          2. 1h2i picpic
            1. chain a [76550] picpiclink
            2. chain b [76551] picpiclink
            3. chain c [76552] picpiclink
            4. chain d [76553] picpiclink
            5. chain e [76554] picpiclink
            6. chain f [76555] picpiclink
            7. chain g [76556] picpiclink
            8. chain h [76557] picpiclink
            9. chain i [76558] picpiclink
            10. chain j [76559] picpiclink
            11. chain k [76560] picpiclink
            12. chain l [76561] picpiclink
            13. chain m [76562] picpiclink
            14. chain n [76563] picpiclink
            15. chain o [76564] picpiclink
            16. chain p [76565] picpiclink
            17. chain q [76566] picpiclink
            18. chain r [76567] picpiclink
            19. chain s [76568] picpiclink
            20. chain t [76569] picpiclink
            21. chain u [76570] picpiclink
            22. chain v [76571] picpiclink
    3. Ribosomal S5 protein, N-terminal domain [54778] (3)
      1. Ribosomal S5 protein, N-terminal domain [54779]
        lacks the N-terminal helix
        1. Bacillus stearothermophilus [TaxId: 1422] [54780] (1)
          1. 1pkp picpicxref
            1. region a:4-77 [38787] picpiclink
        2. Thermus thermophilus [TaxId: 274] [54781] (36)
          SQ P27152
          1. 2uub picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 6mz, cm0, k, mg, par, zn
            1. region e:5-73 [139937] picpiclink
          2. 1fjg picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, scm, sry, zn
            1. region e:5-73 [38789] picpiclink
          3. 1j5e picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with unx, zn
            1. region e:5-73 [71548] picpiclink
          4. 2uxc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with k, mg, par, zn
            1. region e:5-73 [140008] picpiclink
          5. 2uuc picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 6mz, cm0, k, mg, par, zn
            1. region e:5-73 [139957] picpiclink
          6. 2uua picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 6mz, cm0, k, mg, par, zn
            1. region e:5-73 [139917] picpiclink
          7. 1xmq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, t6a, zn
            1. region e:5-73 [115534] picpiclink
          8. 1n32 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. region e:5-73 [79874] picpiclink
          9. 2uu9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 6mz, cm0, k, mg, par, zn
            1. region e:5-73 [139897] picpiclink
          10. 1xnq picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. region e:5-73 [115608] picpiclink
          11. 1xnr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, zn
            1. region e:5-73 [115630] picpiclink
          12. 1hr0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, zn
            1. region e:5-73 [38790] picpiclink
          13. 1hnz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with hyg, mg, zn
            1. region e:5-73 [38791] picpiclink
          14. 2j02 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 5mu, mg, par, zn
            1. region e:5-73 [137870] picpiclink
          15. 2j00 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 5mu, mg, par, zn
            1. region e:5-73 [137843] picpiclink
          16. 1xmo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, mnu, par, t6a, zn
            1. region e:5-73 [115504] picpiclink
          17. 1hnw picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, zn
            1. region e:5-73 [38792] picpiclink
          18. 2e5l picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with zn
            1. region e:5-73 [132029] picpiclink
          19. 1i94 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. region e:2-73 [61996] picpiclink
          20. 1hnx picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, pcy, zn
            1. region e:5-73 [38793] picpiclink
          21. 1n33 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, par, psu, zn
            1. region e:5-73 [79896] picpiclink
          22. 2hhh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with ksg
            1. region e:5-73 [136481] picpiclink
          23. 1i96 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, wo2, zn
            1. region e:2-73 [62040] picpiclink
          24. 1n34 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. region e:5-73 [79918] picpiclink
          25. 1i97 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with mg, tac, wo2, zn
            1. region e:2-73 [62063] picpiclink
          26. 1n36 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with zn
            1. region e:5-73 [79941] picpiclink
          27. 1i95 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            complexed with ede, mg, wo2, zn
            1. region e:2-73 [62018] picpiclink
          28. 2f4v picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with ab9, d2c, k, mg, zn
            1. region e:5-73 [132942] picpiclink
          29. 2hgp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            1. region h:5-73 [136425] picpiclink
          30. 2hgi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            1. region h:5-73 [136404] picpiclink
          31. 2hgr picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            1. region h:5-73 [136446] picpiclink
          32. 2ow8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with 2mg, 4oc, 4su, 5mc, 5mu, 7mg, h2u, m2g, ma6, mia, psu, ur3
            1. region f:5-73 [139403] picpiclink
          33. 1yl4 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            1. region h:5-73 [123601] picpiclink
          34. 2b64 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with psu, yyg
            1. region e:5-73 [127937] picpiclink
          35. 2b9o picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with psu, yyg
            1. region e:5-73 [128167] picpiclink
          36. 2b9m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1i94e2
            complexed with psu, yyg
            1. region e:5-73 [128130] picpiclink
        3. Escherichia coli [TaxId: 562] [160202] (24)
          SQ P0A7W1 9-77
          1. 2qal picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, nmy
            1. region e:9-77 [150218] picpiclink
          2. 2qan picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, nmy
            1. region e:9-77 [150272] picpiclink
          3. 2qbf picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [150492] picpiclink
          4. 2qbd picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [150438] picpiclink
          5. 1vs5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with ksg, mg
            1. region e:9-77 [144440] picpiclink
          6. 3df1 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with hyg, mg
            1. region e:9-77 [157607] picpiclink
          7. 3df3 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with hyg, mg
            1. region e:9-77 [157661] picpiclink
          8. 1vs7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with ksg, mg
            1. region e:9-77 [144481] picpiclink
          9. 2qoy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, nmy, scm
            1. region e:9-77 [151095] picpiclink
          10. 2qp0 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, nmy, scm
            1. region e:9-77 [151148] picpiclink
          11. 2avy picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            Representative structure
            complexed with mg
            1. region e:9-77 [144847] picpiclink
          12. 2aw7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [144890] picpiclink
          13. 2qb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with lll, mg
            1. region e:9-77 [150332] picpiclink
          14. 2qbb picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with lll, mg
            1. region e:9-77 [150385] picpiclink
          15. 2i2p picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [145425] picpiclink
          16. 2i2u picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [145467] picpiclink
          17. 2qbh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with lll, mg
            1. region e:9-77 [150546] picpiclink
          18. 2qbj picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with lll, mg
            1. region e:9-77 [150600] picpiclink
          19. 2qou picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, scm
            1. region e:9-77 [150989] picpiclink
          20. 2qow picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, scm
            1. region e:9-77 [151042] picpiclink
          21. 2z4m picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, par
            1. region e:9-77 [154110] picpiclink
          22. 2vho picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [153127] picpiclink
          23. 2z4k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg, par
            1. region e:9-77 [154056] picpiclink
          24. 2vhp picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2AVY E:9-77
            complexed with mg
            1. region e:9-77 [153149] picpiclink
  2. Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain [54782] (1)
    link to SUPERFAMILY database - Superfamily
    1. Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain [54783] (1)
      1. Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain [54784]
        1. Escherichia coli [TaxId: 562] [54785] (5)
          1. 1pda picpicxref
            complexed with acy, dpm
            1. region a:220-307 [38794] picpiclink
          2. 1gtk picpicxref
            complexed with dpm
            1. region a:220-313 [76347] picpiclink
          3. 1ah5 picpicxref
            complexed with dpm
            1. region a:220-313 [38795] picpiclink
          4. 2ypn picpicxref
            complexed with dpm
            1. region a:220-313 [38796] picpiclink
          5. 1ypn picpicxref
            complexed with dpm; mutant
            1. region a:220-306 [38797] picpiclink
  3. YcfA/nrd intein domain [54786] (3)
    link to SUPERFAMILY database - Superfamily
    1. PI-Pfui intein middle domain [54787] (1)
      1. PI-Pfui intein middle domain [54788]
        contains additional C-terminal helix
        1. Archaeon Pyrococcus furiosus [TaxId: 2261] [54789] (1)
          1. 1dq3 picpicxrefxref
            complexed with zn
            1. region a:336-414 [38798] picpiclink
    2. YcfA-like [117905] (1)
      Pfam 07927
      1. Hypothetical protein TTHA1913 [117906]
        1. Thermus thermophilus [TaxId: 274] [117907] (1)
          SQ Q5SH17
          1. 1whz picpic
            Structural genomics target
            complexed with cl
            1. chain a [114656] picpiclink
    3. YkfF-like [160203] (1)
      Pfam 06006; DUF905
      1. Hypothetical protein YkfF [160204]
        1. Escherichia coli [TaxId: 562] [160205] (1)
          SQ P75677 10-75
          1. 2hjj picpic
            1. region a:10-75 [147295] picpiclink
  4. Peptidyl-tRNA hydrolase domain-like [110916] (1)
    link to SUPERFAMILY database - Superfamily
    1. Peptidyl-tRNA hydrolase domain [110917] (1)
      Pfam 00472; related to domain 3 of the Polypeptide chain release factors RF1 and RF2 (scop_fa 75621)
      1. Ict1 protein [110918]
        1. Mouse (Mus musculus) [TaxId: 10090] [110919] (1)
          SQ Q8R035 63-162
          1. 1j26 picpic
            1. chain a [103823] picpiclink
  5. Rv2632c-like [143212] (1)
    lacks the N-terminal helix; dimerises via the N-terminal strand and the C-terminal helix with the formation of a single beta-sheet wrapped around an antiparallel coiled coil
    link to SUPERFAMILY database - Superfamily
    1. Rv2632c-like [143213] (1)
      1. Hypothetical protein Rv2632c/MT2708 [143214]
        1. Mycobacterium tuberculosis [TaxId: 1773] [143215] (1)
          SQ P65033 4-87
          1. 2fgg picpic
            1. region a:4-87 [133438] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk