Structural Classification of Proteins

Fold: Ferredoxin-like

: alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Ferredoxin-like [54861]
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2

Superfamilies:

4Fe-4S ferredoxins [54862] (6)
uperfamily
1. Short-chain ferredoxins [54863] (5)
  contains two 4Fe-4S clusters
  1. Ferredoxin II [54864]
    1. Peptostreptococcus asaccharolyticus [TaxId: 1258] [54866] (1)
    2. Clostridium acidurici [TaxId: 1556] [54867] (3)
    3. Clostridium pasteurianum [TaxId: 1501] [54868] (1)
    4. Chromatium vinosum [TaxId: 1049] [54869] (1)
    5. Thauera aromatica [TaxId: 59405] [102954] (1)
2. 7-Fe ferredoxin [54870] (5)
  has C-terminal extension to the common fold
  1. Ferredoxin [54871]
    1. Azotobacter vinelandii [TaxId: 354] [54872] (32)
    2. Bacillus schlegelii [TaxId: 1484] [54873] (4)
    3. Thermus thermophilus [TaxId: 274] [69725] (1)
  2. Photosystem I iron-sulfur protein PsaC [64272]
    1. Synechococcus elongatus [TaxId: 32046] [64273] (1)
    2. Synechococcus sp. pcc 7002 [TaxId: 32049] [75426] (1)
3. Archaeal ferredoxins [54874] (1)
  1. Ferredoxin [54875]
    the N-terminal extension to the common fold forms a part of a Zn-binding site
    1. Archaeon Sulfolobus sp. [TaxId: 2288] [54876] (1)
4. Single 4Fe-4S cluster ferredoxin [54877] (5)
  contains only one 4Fe-4S cluster
  1. Ferredoxin A [54878]
    1. Thermotoga maritima [TaxId: 2336] [54879] (2)
  2. Ferredoxin I [54880]
    1. Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873] [54881] (3)
    2. Desulfovibrio gigas [TaxId: 879] [54865] (2)
  3. Ferredoxin [54882]
    1. Bacillus thermoproteolyticus [TaxId: 1427] [54883] (6)
  4. Fe3S4-ferredoxin PF1909 [110946]
    1. Pyrococcus furiosus [TaxId: 2261] [110947] (2)
      SQ P29603
5. Ferredoxin domains from multidomain proteins [54884] (15)
  members of this "family" may be more closely related to other ferredoxins than to each other
  1. Fe-only hydrogenase, second domain [54885]
    1. Clostridium pasteurianum [TaxId: 1501] [54886] (4)
  2. Fe-only hydrogenase larger subunit, N-domain [54887]
    1. Desulfovibrio desulfuricans [TaxId: 876] [54888] (1)
  3. Pyruvate-ferredoxin oxidoreductase, PFOR, domain V [54889]
    1. Desulfovibrio africanus [TaxId: 873] [54890] (17)
  4. Dihydropyrimidine dehydrogenase, C-terminal domain [54891]
    includes linker from domain 4
    1. Pig (Sus scrofa) [TaxId: 9823] [54892] (5)
  5. Adenylylsulfate reductase B subunit [69726]
    includes N-terminal partly folded tail
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [69727] (10)
  6. Formate dehydrogenase N, iron-sulfur (beta) subunit [75427]
    1. Escherichia coli [TaxId: 562] [75428] (2)
  7. Tungsten containing formate dehydrogenase, small subunit [82664]
    1. Desulfovibrio gigas [TaxId: 879] [82665] (1)
  8. Respiratory nitrate reductase 1 beta chain [102955]
    1. Escherichia coli [TaxId: 562] [102956] (7)
      SQ P11349
  9. Transhydroxylase beta subunit, BthL, N-terminal domain [110948]
    1. Pelobacter acidigallici [TaxId: 35816] [110949] (6)
      SQ P80564
  10. NADH-quinone oxidoreductase chain 9, Nqo9 [143252]
    1. Thermus thermophilus [TaxId: 274] [143253] (4)
      SQ Q56224 26-179
  11. NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 [143254]
    1. Thermus thermophilus [TaxId: 274] [143255] (4)
      SQ Q56223 96-246
  12. DsrB insert domain [160277]
    1. Desulfovibrio vulgaris [TaxId: 881] [160278] (2)
      SQ P45575 209-277
    2. Archaeoglobus fulgidus [TaxId: 2234] [160279] (2)
      SQ Q59110 197-261
  13. DsrA insert domain [160280]
    1. Desulfovibrio vulgaris [TaxId: 881] [160281] (2)
      SQ P45574 242-322
    2. Archaeoglobus fulgidus [TaxId: 2234] [160282] (2)
      SQ Q59109 240-305
6. ETF-QO domain-like [143256] (1)
  Pfam 05187; Electron transfer flavoprotein-ubiquinone oxidoreductase; contains single Fe4-S4 cluster
  1. Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO [143257]
    1. Pig (Sus scrofa) [TaxId: 9823] [143258] (4)
      SQ P55931 506-607
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain [54893] (1)
uperfamily
1. Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain [54894] (2)
  1. Aspartate carbamoyltransferase [54895]
    1. Escherichia coli [TaxId: 562] [54896] (59)
      SQ P00478
    2. Archaeon Sulfolobus acidocaldarius [TaxId: 2285] [110950] (2)
Protease propeptides/inhibitors [54897] (3)
uperfamily
1. Pancreatic carboxypeptidase, activation domain [54898] (6)
  1. Procarboxypeptidase A [54899]
    1. Pig (Sus scrofa) [TaxId: 9823] [54900] (1)
    2. Cow (Bos taurus) [TaxId: 9913] [54901] (1)
    3. Human (Homo sapiens) [TaxId: 9606] [54902] (4)
      procarboxypeptidase A2
    4. Cotton bollworm (Helicoverpa armigera) [TaxId: 29058] [75429] (1)
  2. Procarboxypeptidase B [54903]
    1. Pig (Sus scrofa) [TaxId: 9823] [54904] (2)
    2. Human (Homo sapiens) [TaxId: 9606] [75430] (1)
2. Subtilase propeptides/inhibitors [54905] (4)
  decorated with additional structure
  1. Subtilisin prosegment [54906]
    1. Bacillus amyloliquefaciens [TaxId: 1390] [54907] (1)
    2. Bacillus subtilis [TaxId: 1423] [54908] (1)
  2. Proteinase A inhibitor 1, POIA1 [69728]
    1. Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322] [69729] (2)
  3. Pro-kumamolisin activation domain [110951]
    1. Bacillus sp. MN-32 [TaxId: 198803] [110952] (1)
      SQ Q8RR56
3. Prohormone convertase 1 pro-domain [75431] (1)
  1. Prohormone convertase 1 pro-domain [75432]
    1. Mouse (Mus musculus) [TaxId: 10090] [75433] (1)
Dimeric alpha+beta barrel [54909] (23)
dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
uperfamily
1. Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82666] (1)
  1. Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82667]
    1. Streptomyces coelicolor [TaxId: 1902] [82668] (5)
2. Plant stress-induced protein [89927] (3)
  1. Hypothetical protein AT3G17210.1 [89928]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [89929] (3)
  2. Hypothetical protein AT5G22580 [102957]
    1. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [102958] (1)
  3. Boiling stable protein 1 [110953]
    1. European aspen (Populus tremula) [TaxId: 113636] [110954] (2)
      SQ Q9AR79
3. PG130-like [102959] (5)
  subfamily of Pfam 03992
  1. Hypothetical protein TT1380 [102960]
    1. Thermus thermophilus [TaxId: 274] [102961] (1)
  2. Hypothetical protein PG130 (SAV0165) [110955]
    1. Staphylococcus aureus [TaxId: 1280] [110956] (3)
      SQ Q99X56
  3. Hypothetical protein BC2969 [110957]
    1. Bacillus cereus [TaxId: 1396] [110958] (1)
      SQ Q81C15
  4. Hypothetical protein IsdG [117934]
    1. Staphylococcus aureus [TaxId: 1280] [117935] (1)
      SQ Q8NX62
  5. Hypothetical protein YqjZ [160283]
    1. Bacillus subtilis [TaxId: 1423] [160284] (1)
      SQ P54563 3-110
4. Hypothetical protein YjcS [102962] (1)
  1. Hypothetical protein YjcS [102963]
    1. Bacillus subtilis [TaxId: 1423] [102964] (1)
5. YciI-like [102965] (1)
  structural similarity to MLI extends to the active site cavity location
  1. Hypothetical protein HI0828 [102966]
    1. Haemophilus influenzae [TaxId: 727] [102967] (1)
6. Muconalactone isomerase, MLI [54910] (1)
  decamer: pentamer of dimers
  1. Muconalactone isomerase, MLI [54911]
    1. Pseudomonas putida [TaxId: 303] [54912] (10)
7. Lrp/AsnC-like transcriptional regulator C-terminal domain [69733] (4)
  octamer: tetramer of dimers
  1. LprA [69734]
    1. Archaeon Pyrococcus furiosus [TaxId: 2261] [69735] (1)
  2. Putative transcriptional regulator PH1519 [102968]
    archaeal feast/famine regulatory protein
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102969] (3)
      identical sequence to Pyrococcus sp. ot3 protein
  3. Transcriptional regulator LrpC [143259]
    1. Bacillus subtilis [TaxId: 1423] [143260] (8)
      SQ P96582 64-140
  4. Regulatory protein AsnC [143261]
    1. Escherichia coli [TaxId: 562] [143262] (2)
      SQ P0ACI6 67-152
8. Polyketide synthesis cyclase [110959] (1)
  Pfam 04673
  1. Tetracenomycin polyketide synthesis protein TcmI [110960]
    1. Streptomyces glaucescens [TaxId: 1907] [110961] (1)
      SQ P39890
9. DGPF domain (Pfam 04946) [110962] (1)
  there is the putative active site cavity in the equivalent location location to the MLI and YciI active sites
  1. Hypothetical protein PA1349 [110963]
    1. Pseudomonas aeruginosa [TaxId: 287] [110964] (1)
      SQ Q9I3Z5
10. Chlorite dismutase-like [110965] (2)
  Pfam 06778; duplication: consists of two similar domains; forms a pentamer similar to the MLI decamer
  1. YwfI homologue [110966]
    1. Bacillus stearothermophilus [TaxId: 1422] [110967] (1)
      SQ Q5KUD5 # 98% sequence identity; Geobacillus kaustophilus TaxID:1462
  2. Polyketide synthase CurD homologue TTHA1714/TTC1352 [110968]
    1. Thermus thermophilus [TaxId: 274] [110969] (1)
      SQ Q5SHL6
11. PA3566-like [110970] (5)
  subfamily of Pfam 03992
  1. Hypothetical protein PA3566 [110971]
    1. Pseudomonas aeruginosa [TaxId: 287] [110972] (1)
      SQ Q9HY51
  2. Hypothetical protein YgiN [117936]
    1. Escherichia coli [TaxId: 562] [117937] (2)
      SQ P0ADU2 P40718
  3. Hypothetical protein Rv0793 [117938]
    1. Mycobacterium tuberculosis [TaxId: 1773] [117939] (1)
      SQ O86332
  4. Hypothetical protein NE2512 [160285]
    1. Nitrosomonas europaea [TaxId: 915] [160286] (4)
      SQ Q82S47 1-100
  5. Hypothetical protein NE0621 [160287]
    1. Nitrosomonas europaea [TaxId: 915] [160288] (8)
      SQ Q82WP3 1-98
12. Hypothetical protein YdhR [117940] (1)
  1. Hypothetical protein YdhR [117941]
    1. Escherichia coli [TaxId: 562] [117942] (5)
      SQ P77225
13. NIPSNAP [117943] (2)
  Pfam 07978
  1. Hypothetical protein Atu4242 [117944]
    1. Agrobacterium tumefaciens [TaxId: 358] [117945] (9)
      SQ Q8U857
  2. Hypothetical protein Atu5224 [143263]
    1. Agrobacterium tumefaciens [TaxId: 358] [143264] (8)
      SQ Q8UK99 1-104
14. Dyp-type peroxidase-like [143265] (3)
  Pfam 04261
  1. Hypothetical protein BT1219 [143266]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [143267] (1)
      SQ Q8A8E8 8-316
  2. Decolorizing peroxidase DyP [143268]
    1. Geotrichum candidum [TaxId: 27317] [143269] (2)
      SQ Q8WZK8 60-498
      species assignment from the UniProt sequence (Id 100%); 2d3q species is Thanatephorus cucumeris
  3. Melanin biosynthesis protein TyrA [143270]
    1. Shewanella oneidensis [TaxId: 70863] [143271] (2)
      SQ Q8EIU4 5-311
15. EthD-like [143272] (1)
  Pfam 07110
  1. Hypothetical protein BH0200 [143273]
    1. Bacillus halodurans [TaxId: 86665] [143274] (2)
      SQ Q9KGB0 4-106
16. Atu0297-like [143275] (1)
  Pfam 07045; DUF1330
  1. Hypothetical protein Atu0297 [143276]
    1. Agrobacterium tumefaciens [TaxId: 358] [143277] (2)
      SQ Q8UIJ7 1-95
17. SOR-like [143278] (1)
  Pfam 07682; duplication: consists of two similar domains
  1. Sulfur oxygenase reductase SOR [143279]
    1. Acidianus ambivalens [TaxId: 2283] [143280] (1)
      SQ P29082 2-308
18. YbaA-like [160289] (1)
  Pfam 07237; DUF1428
  1. Hypothetical protein YbaA [160290]
    1. Shigella flexneri [TaxId: 623] [160291] (2)
      SQ P0AAQ9 1-117
19. MmlI-like [160292] (1)
  Pfam 09448; Methylmuconolactone methyl-isomerase
  1. Hypothetical protein Reut_A1503 [160293]
    1. Ralstonia eutropha [TaxId: 106590] [160294] (2)
      SQ Q471R3 1-108
20. Marine metagenome family DABB2 [160295] (1)
  1. Hypothetical protein GOS_3280838 [160296]
    1. environmental samples [160297] (2)
21. YiiL-like [160298] (1)
  Pfam 05336; DUF718
  1. L-rhamnose mutarotase YiiL [160299]
    1. Escherichia coli [TaxId: 562] [160300] (4)
      SQ P32156 1-104
22. Marine metagenome family DABB1 [160301] (2)
  1. Hypothetical protein GOS_7213774 [160302]
    1. environmental samples [160303] (6)
      marine metagenome
  2. Hypothetical protein GOS_2359375 [160304]
    1. environmental samples [160305] (4)
      marine metagenome
23. Marine metagenome family DABB3 [160306] (1)
  duplication: consists of two similar domains; forms a pentamer similar to the Chlorite dismutase-like pentamer and the MLI decamer
  1. Uncharacterized protein GOS_2596953 [160307]
    1. environmental samples [160308] (5)
GlnB-like [54913] (5)
form timeric structures with the orthogonally packed beta-sheets
uperfamily
1. Prokaryotic signal transducing protein [54914] (8)
  1. PII (product of glnB) [54915]
    trimer with orthogonal packing of beta-sheets around the threefold axis
    1. Escherichia coli [TaxId: 562] [54916] (2)
    2. Herbaspirillum seropedicae [TaxId: 964] [89930] (1)
    3. Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131] [102970] (1)
    4. Cyanobacteria (Synechococcus sp.) pcc pcc 6803 [TaxId: 1131] [102971] (1)
    5. Thermus thermophilus [TaxId: 274] [102972] (5)
      SQ P83820
  2. PII-homolog GlnK [54917]
    1. Escherichia coli [TaxId: 562] [54918] (8)
    2. Shigella flexneri [TaxId: 623] [160309] (1)
      SQ P0AC58 1-112
  3. Hypothetical protein TTHA0516 [143281]
    1. Thermus thermophilus [TaxId: 274] [143282] (3)
      SQ Q5SKX7 1-100
2. Divalent ion tolerance proteins CutA (CutA1) [75434] (7)
  1. Cut A1 [89931]
    1. Thermus thermophilus [TaxId: 274] [89932] (2)
    2. Escherichia coli [TaxId: 562] [102973] (1)
    3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [102974] (15)
      SQ O58720
    4. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [89933] (1)
  2. Hypothetical protein TM1056 [75435]
    1. Thermotoga maritima [TaxId: 2336] [75436] (3)
  3. Mammalian CutA-like protein [102975]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [102976] (1)
    2. Human (Homo sapiens) [TaxId: 9606] [117946] (7)
      SQ O60888 40-146
3. DUF190/COG1993 [89934] (1)
  1. Hypothetical protein TM0021 [89935]
    1. Thermotoga maritima [TaxId: 2336] [89936] (1)
4. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [88851] (2)
  1. ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain [82669]
    binds allosteric inhibitor histidine
    1. Mycobacterium tuberculosis [TaxId: 1773] [82670] (2)
    2. Escherichia coli [TaxId: 562] [102977] (2)
5. RPA1041-like [160310] (1)
  PF09413; DUF2007; provisional superfamily assignment based on a single monomeric solution structure
  1. Hypothetical protein RPA1041 [160311]
    1. Rhodopseudomonas palustris [TaxId: 1076] [160312] (1)
      SQ Q6NAY9 1-75
      missannotated in PDB 2HFV as Pseudomonas aeruginosa
SEA domain [82671] (1)
uperfamily
1. SEA domain [82672] (1)
  1. SEA domain from the hypothetical protein homologous to mucin 16 [82673]
    1. Mouse (Mus musculus) [TaxId: 10090] [82674] (1)
Nucleoside diphosphate kinase, NDK [54919] (1)
uperfamily
1. Nucleoside diphosphate kinase, NDK [54920] (20)
  1. Nucleoside diphosphate kinase, NDK [54921]
    1. Human (Homo sapiens) [TaxId: 9606] [54922] (14)
    2. Human (Homo sapiens), NDK4 [TaxId: 9606] [54923] (1)
    3. Human (Homo sapiens), NDKA [TaxId: 9606] [75437] (5)
    4. Cow (Bos taurus) [TaxId: 9913] [54924] (2)
    5. Dictyostelium discoideum [TaxId: 44689] [54925] (27)
    6. Drosophila melanogaster [TaxId: 7227] [54926] (2)
    7. Myxococcus xanthus [TaxId: 34] [54927] (3)
    8. Mycobacterium tuberculosis [TaxId: 1773] [75438] (1)
    9. Bacillus halodenitrificans [TaxId: 1482] [89937] (1)
    10. Plasmodium falciparum, isolate 3D7 [TaxId: 5833] [117947] (1)
      SQ Q8ID43
    11. Pea (Pisum sativum) [TaxId: 3888] [117948] (1)
      SQ Q9SP13 81-231
    12. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [117949] (1)
      SQ P39207
    13. Thale cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId: 3702] [117950] (2)
      SQ O64903 79-231
    14. Human(Homo sapiens), NDK3 [TaxId: 9606] [143283] (3)
      SQ Q13232 18-169
    15. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143284] (12)
      SQ O58429 3-155
    16. Rice(Oryza sativa) [TaxId: 4530] [143285] (12)
      SQ Q07661 1-148
    17. Mimivirus [TaxId: 315393] [143286] (8)
      SQ Q5UQL3 2-137
    18. Archaeon Pyrobaculum aerophilum [TaxId: 13773] [143287] (3)
      SQ Q8ZWY4 2-183
    19. Archaeon Halobacterium salinarum [TaxId: 2242] [143288] (15)
      SQ P61136 4-158
    20. Thermus thermophilus [TaxId: 274] [143289] (6)
      SQ Q5SLV5 1-137
RNA-binding domain, RBD [54928] (5)
uperfamily
1. Canonical RBD [54929] (71)
  1. Nuclear ribonucleoprotein A1 (RNP A1, UP1) [54930]
    duplication: contains two domains of this fold
    1. Human (Homo sapiens) [TaxId: 9606] [54931] (14)
      SQ P09651 7-188
  2. Nuclear ribonucleoprotein D0 (AUF1) [75439]
    1. Human (Homo sapiens) [TaxId: 9606] [75440] (3)
  3. Splicesomal U1A protein [54932]
    duplication: contains two domains of this fold
    1. Human (Homo sapiens) [TaxId: 9606] [54933] (38)
      SQ P09012 1-97 ! SQ P09012 4-98 ! SQ P09012 1-98
    2. Drosophila melanogaster [TaxId: 7227] [160313] (3)
      SQ P43332 1-104! SQ P43332 134-216
  4. Splicing factor U2B'' [54934]
    1. Human (Homo sapiens) [TaxId: 9606] [54935] (1)
  5. Splicing factor U2AF 65 KDa subunit [54936]
    1. Human (Homo sapiens) [TaxId: 9606] [54937] (4)
  6. Sex-lethal protein [54938]
    1. Drosophila melanogaster [TaxId: 7227] [54939] (4)
  7. Hu antigen C (Huc) [54940]
    1. Mouse (Mus musculus) [TaxId: 10090] [54941] (3)
  8. Hu antigen D (Hud) [54942]
    1. Human (Homo sapiens) [TaxId: 9606] [54943] (2)
  9. Heterogeneous nuclear ribonucleoprotein d0 [54944]
    1. Human (Homo sapiens) [TaxId: 9606] [54945] (2)
  10. Neural RNA-binding protein Musashi-1 [54946]
    1. Mouse (Mus musculus) [TaxId: 10090] [54947] (2)
  11. Poly(A)-binding protein [54948]
    1. Human (Homo sapiens) [TaxId: 9606] [54949] (1)
  12. Polypyrimidine tract-binding protein [54950]
    1. Human (Homo sapiens) [TaxId: 9606] [54951] (9)
      SQ P26599 54-141, 177-284, 335-531
  13. Nucleolin [54952]
    1. Golden hamster (Mesocricetus auratus) [TaxId: 10036] [54953] (4)
  14. CBP20, 20KDa nuclear cap-binding protein [64274]
    1. Human (Homo sapiens) [TaxId: 9606] [64275] (6)
  15. RNA-binding protein 8 [89938]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [89939] (3)
      CG8781 protein
    2. Human (Homo sapiens) [TaxId: 9606] [102978] (6)
      RBM8A, Y14
  16. Lupus LA protein [89940]
    1. Human (Homo sapiens) [TaxId: 9606] [89941] (13)
  17. Nuclear factor Aly [102979]
    1. Mouse (Mus musculus) [TaxId: 10090] [102980] (1)
  18. Musashi-1 [102981]
    1. Mouse (Mus musculus) [TaxId: 10090] [102982] (1)
  19. Cleavage stimulation factor, 64 kda subunit [102983]
    1. Human (Homo sapiens) [TaxId: 9606] [102984] (1)
  20. Synaptojanin 2 [102985]
    1. Human (Homo sapiens) [TaxId: 9606] [102986] (1)
  21. Heterogeneous nuclear ribonucleoprotein L-like [117951]
    1. Mouse (Mus musculus) [TaxId: 10090] [117952] (1)
      SQ Q921F4 116-207
  22. Calcipressin-1 [117953]
    1. Mouse (Mus musculus) [TaxId: 10090] [117954] (1)
      SQ Q9JHG6 14-103
  23. Heterogeneous nuclear ribonucleoprotein H' [117955]
    1. Human (Homo sapiens) [TaxId: 9606] [117956] (2)
      SQ P55795 103-193; 280-369
  24. TAR DNA-binding protein 43, TDP-43 [117957]
    1. Human (Homo sapiens) [TaxId: 9606] [117958] (2)
      SQ Q13148 193-267
  25. RNA-binding protein Raly (Autoantigen p542) [117959]
    1. Human (Homo sapiens) [TaxId: 9606] [117960] (1)
      SQ Q9UKM9 1-97
  26. Heterogeneous nuclear ribonucleoproteins C1/C2 [117961]
    1. Human (Homo sapiens) [TaxId: 9606] [117962] (1)
      SQ P07910 8-92
  27. Probable RNA-binding protein KIAA1579 [117963]
    1. Human (Homo sapiens) [TaxId: 9606] [117964] (1)
      SQ Q9HCJ3 71-145
  28. Splicing factor, arginine/serine-rich 9 (SFRS9) [117965]
    1. Mouse (Mus musculus) [TaxId: 10090] [117966] (1)
      SQ Q9D0B0 104-188
  29. Poly(A)-specific ribonuclease PARN [117967]
    1. Mouse (Mus musculus) [TaxId: 10090] [117968] (1)
      SQ Q8VDG3 430-516; structure of the R3H domain (162-248) is also known (scop_sp 111031)
  30. Probable RNA-binding protein 19, Rbm19 [117969]
    1. Mouse (Mus musculus) [TaxId: 10090] [117970] (4)
      SQ Q8R3C6 399-484; 581-678
  31. Putative RNA-binding protein 15B, Rbm15b [117971]
    1. Mouse (Mus musculus) [TaxId: 10090] [117972] (1)
      SQ Q6PHZ5 81-164
  32. Eukaryotic translation initiation factor 4B [117973]
    1. Human (Homo sapiens) [TaxId: 9606] [117974] (1)
      SQ P23588 88-178
  33. HIV Tat-specific factor 1 [143290]
    1. Human (Homo sapiens) [TaxId: 9606] [143291] (1)
      SQ O43719 256-354
  34. Ataxin-2-binding protein 1 [143292]
    1. Human (Homo sapiens) [TaxId: 9606] [143293] (1)
      SQ Q9NWB1 109-196
  35. E3 ubiquitin protein ligase CNOT4 [143294]
    CCR4-NOT transcription complex subunit 4
    1. Mouse (Mus musculus) [TaxId: 10090] [143295] (1)
      SQ Q8BT14 101-198
  36. RNA-binding protein 41, RBM41 [143296]
    1. Human (Homo sapiens) [TaxId: 9606] [143297] (1)
      SQ Q96IZ5 291-392
  37. Nucleolysin TIAR [143298]
    1. Human (Homo sapiens) [TaxId: 9606] [143299] (2)
      SQ Q01085 1-90! SQ Q01085 187-282
  38. Cold-inducible RNA-binding protein [143300]
    1. Human (Homo sapiens) [TaxId: 9606] [143301] (1)
      SQ Q14011 1-90
  39. Negative elongation factor E, NELF-E [143302]
    1. Human (Homo sapiens) [TaxId: 9606] [143303] (3)
      SQ P18615 257-335! SQ P18615 258-341
  40. Eukaryotic translation initiation factor 3 subunit 4 [143304]
    1. Human (Homo sapiens) [TaxId: 9606] [143305] (1)
      SQ O75821 231-320
  41. Matrin 3 [143306]
    1. Mouse (Mus musculus) [TaxId: 10090] [143307] (2)
      SQ Q8K310 390-478! SQ Q8K310 478-576
  42. Ribonucleoprotein PTB-binding 1, Raver-1 [143308]
    1. Mouse (Mus musculus) [TaxId: 10090] [143309] (1)
      SQ Q9CW46 61-135
  43. Peptidyl-prolyl cis-trans isomerase E, N-terminal domain [143310]
    1. Human (Homo sapiens) [TaxId: 9606] [143311] (1)
      SQ Q9UNP9 1-89
  44. Arginine/serine-rich splicing factor 10 [143312]
    1. Human (Homo sapiens) [TaxId: 9606] [143313] (1)
      SQ P62995 109-191
  45. RNA-binding protein 9 [143314]
    1. Human (Homo sapiens) [TaxId: 9606] [143315] (1)
      SQ O43251 110-202
  46. Pre-mRNA branch site protein p14 [143316]
    1. Human (Homo sapiens) [TaxId: 9606] [143317] (4)
      SQ Q9Y3B4 12-125
  47. Splicing factor 3B subunit 4 [143318]
    1. Human (Homo sapiens) [TaxId: 9606] [143319] (2)
      SQ Q15427 102-184! SQ Q15427 4-96
  48. RNA-binding motif, single-stranded-interacting protein 2, RBMS2 [143320]
    1. Human (Homo sapiens) [TaxId: 9606] [143321] (1)
      SQ Q15434 58-129
  49. RNA-binding protein UBP1 [143322]
    1. Trypanosoma cruzi [TaxId: 5693] [143323] (1)
      SQ Q967R0 1-139
  50. Limkain-b1, LKAP [143324]
    KIAA0430
    1. Human (Homo sapiens) [TaxId: 9606] [143325] (1)
      SQ Q9Y4F3 788-870
  51. APOBEC1 stimulating protein [143326]
    1. Human (Homo sapiens) [TaxId: 9606] [143327] (1)
      SQ Q9NQ94 223-308
  52. Hypothetical protein FLJ20273 [143328]
    1. Human (Homo sapiens) [TaxId: 9606] [143329] (1)
      SQ Q8NI52 150-245
  53. Nucleoporin 35 [143330]
    1. Mouse (Mus musculus) [TaxId: 10090] [143331] (4)
      SQ Q8R4R6 169-249
  54. Polypyrimidine tract-binding protein 2, PTBP2 [143332]
    1. Human (Homo sapiens) [TaxId: 9606] [143333] (1)
      SQ Q9UKA9 51-138
  55. Alkylation repair AlkB homolog 8, ALKBH8 [143334]
    1. Human (Homo sapiens) [TaxId: 9606] [143335] (1)
      SQ Q96BT7 25-125
  56. CUG triplet repeat RNA-binding protein 1 [143336]
    1. Human (Homo sapiens) [TaxId: 9606] [143337] (1)
      SQ Q92879 383-484
  57. U4/U6 snRNA-associated-splicing factor PRP24 [143338]
    contains three RBDs
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [143339] (24)
      SQ P49960 116-196! SQ P49960 206-291! SQ P49960 41-115
  58. RNA-binding protein EWS [143340]
    1. Human (Homo sapiens) [TaxId: 9606] [143341] (1)
      SQ Q01844 353-453
  59. Heterogeneous nuclear ribonucleoproteins A2/B1 [143342]
    1. Human (Homo sapiens) [TaxId: 9606] [143343] (1)
      SQ P22626 1-103
  60. IGF-II mRNA-binding protein 2 isoform A [143344]
    1. Human (Homo sapiens) [TaxId: 9606] [143345] (1)
      SQ Q9Y6M1 2-81
  61. Splicing factor, arginine/serine-rich 1, SFRS1 [143346]
    1. Human (Homo sapiens) [TaxId: 9606] [143347] (3)
      SQ Q07955 1-95
    2. Mouse (Mus musculus) [TaxId: 10090] [143348] (1)
      SQ Q6PDM2 112-206
  62. RNA-binding protein 12 [143349]
    3rd RBD
    1. Human (Homo sapiens) [TaxId: 9606] [143350] (2)
      SQ Q9NTZ6 412-523! SQ Q9NTZ6 536-638
    2. Mouse (Mus musculus) [TaxId: 10090] [143351] (1)
      SQ Q8R4X3 917-1002
  63. RNA binding protein 23 [143352]
    1. Human (Homo sapiens) [TaxId: 9606] [143353] (1)
      SQ Q86U06 148-248
  64. Non-POU domain-containing octamer-binding protein, NonO [143354]
    1. Mouse (Mus musculus) [TaxId: 10090] [143355] (1)
      SQ Q99K48 68-153
  65. RNA-binding motif, single-stranded-interacting protein 1, RBMS1 [143356]
    1. Human (Homo sapiens) [TaxId: 9606] [143357] (1)
      SQ P29558 123-223
  66. RNA-binding protein 28 [143358]
    1. Mouse (Mus musculus) [TaxId: 10090] [143359] (1)
      SQ Q8CGC6 316-413
  67. RNA-binding region containing protein 1 [143360]
    1. Human (Homo sapiens) [TaxId: 9606] [143361] (1)
      SQ Q9H0Z9 1-103
2. Non-canonical RBD domain [54954] (1)
  1. mRNA export factor tap [54955]
    1. Human (Homo sapiens) [TaxId: 9606] [54956] (5)
3. Splicing factor U2AF subunits [64276] (1)
  1. U2AF35 (35 KDa subunit) [64277]
    1. Human (Homo sapiens) [TaxId: 9606] [64278] (1)
4. Smg-4/UPF3 [102987] (1)
  Pfam 03467
  1. RNA processing protein UPF3x, RRM domain [102988]
    1. Human (Homo sapiens) [TaxId: 9606] [102989] (1)
5. GUCT domain [160314] (1)
  Pfam 08152
  1. ATP-dependent RNA helicase DDX50 [160315]
    1. Human (Homo sapiens) [TaxId: 9606] [160316] (1)
      SQ Q9BQ39 575-659
Viral DNA-binding domain [54957] (1)
uperfamily
1. Viral DNA-binding domain [54958] (6)
  1. Papillomavirus-1 E2 protein [54959]
    forms dimers with subunit beta-sheets making (8,12) barrel
    1. Bovine papillomavirus type 1 [TaxId: 10559] [54960] (3)
    2. Human papillomavirus type 31 [TaxId: 10585] [54961] (2)
    3. Human papillomavirus type 16 [TaxId: 333760] [54962] (5)
      SQ P03120 286-365
    4. Human papillomavirus type 18 [TaxId: 333761] [54963] (2)
    5. Human papillomavirus type 6a [TaxId: 37122] [102990] (11)
  2. Epstein barr virus nuclear antigen-1 (ebna1) [54964]
    DNA-binding mode differs from that of E2 protein
    1. Epstein-Barr virus [TaxId: 10376] [54965] (2)
RuBisCO, large subunit, small (N-terminal) domain [54966] (1)
C-terminal domain is beta/alpha barrel
uperfamily
1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [54967] (12)
  1. Ribulose 1,5-bisphosphate carboxylase-oxygenase [54968]
    1. Tobacco (Nicotiana tabacum), variant turkish samsun [TaxId: 4097] [54969] (5)
    2. Spinach (Spinacia oleracea) [TaxId: 3562] [54970] (11)
    3. Galdieria partita [TaxId: 83374] [54971] (2)
    4. Chlamydomonas reinhardtii [TaxId: 3055] [69730] (74)
    5. Alcaligenes eutrophus [TaxId: 106590] [54972] (1)
    6. Synechococcus sp., strain pcc 6301 [TaxId: 1131] [54973] (16)
    7. Rhodospirillum rubrum [TaxId: 1085] [54974] (5)
    8. Archaeon Thermococcus kodakaraensis [TaxId: 311400] [69731] (1)
    9. Chlorobium tepidum [TaxId: 1097] [117975] (3)
      SQ Q8KBL4 1-428
    10. Rice (Oryza sativa) [TaxId: 4530] [117976] (1)
      SQ P12089
    11. Archaeon Halothiobacillus neapolitanus [TaxId: 927] [143362] (1)
      SQ O85040 16-142
    12. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143363] (10)
      SQ O58677 8-133
Acylphosphatase/BLUF domain-like [54975] (2)
uperfamily
1. Acylphosphatase-like [54976] (6)
  1. Acylphosphatase [54977]
    1. Cow (Bos taurus) [TaxId: 9913] [54978] (1)
    2. Horse (Equus caballus) [TaxId: 9796] [54979] (1)
    3. Pyrococcus horikoshii [TaxId: 53953] [110973] (2)
      SQ P84142
    4. Thermus thermophilus [TaxId: 274] [117977] (1)
      SQ Q5SKS6
  2. Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) [82675]
    1. Escherichia coli [TaxId: 562] [82676] (2)
  3. Acylphosphatase 2 (Cg18505) [110974]
    1. Fruit fly (Drosophila melanogaster) [TaxId: 7227] [110975] (1)
      SQ Q9VF36
2. BLUF domain [143364] (3)
  Pfam 04940; sensors of blue-light using FAD
  1. Blue light receptor BlrB [143365]
    1. Rhodobacter sphaeroides [TaxId: 1063] [143366] (2)
      SQ Q3IYE4 1-136
  2. Sensor of blue light AppA [143367]
    1. Rhodobacter sphaeroides [TaxId: 1063] [143368] (4)
      SQ Q53119 17-130! SQ Q53119 5-125
  3. Hypothetical protein Tll0078 [143369]
    1. Thermosynechococcus elongatus [TaxId: 146786] [143370] (10)
      SQ Q8DMN3 2-143
EF-G C-terminal domain-like [54980] (3)
uperfamily
1. EF-G/eEF-2 domains III and V [54981] (3)
  domain III structure is lacking some of the superfamily characters and is often disordered in crystals
  1. Elongation factor G (EF-G) [54982]
    domain III is seen in 1FNM but disordered in the most of other PDB entries
    1. Thermus thermophilus [TaxId: 274] [54983] (12)
    2. Thermus thermophilus, EF-G-2 [TaxId: 274] [143371] (4)
      SQ Q5SI76 371-447! SQ Q5SI76 563-658
      TTHA1498
  2. Elongation factor 2 (eEF-2) [82677]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [82678] (41)
      SQ P32324
2. YigZ C-terminal domain-like [102991] (2)
  similar to EF-G domain V; N-terminal domain shares structural similarity with the EF-G domain IV
  1. Hypothetical protein YigZ, C-terminal domain [102992]
    1. Escherichia coli [TaxId: 562] [102993] (1)
  2. Hypothetical protein TTHA1053, C-terminal domain [143372]
    1. Thermus thermophilus [TaxId: 274] [143373] (1)
      SQ Q5SJF5 125-191
3. Hypothetical protein AF0491, C-terminal domain [110976] (1)
  1. Hypothetical protein AF0491, C-terminal domain [110977]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [110978] (2)
      SQ O29759
eEF-1beta-like [54984] (1)
uperfamily
1. eEF-1beta-like [54985] (3)
  1. Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta [54986]
    1. Human (Homo sapiens) [TaxId: 9606] [54987] (1)
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [54988] (6)
  2. aEF-1beta [54989]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [54990] (1)
eEF1-gamma domain [89942] (1)
elaborated with additional structures
uperfamily
1. eEF1-gamma domain [89943] (1)
  1. Elongation factor 1-gamma C-terminal domain [89944]
    1. Human (Homo sapiens) [TaxId: 9606] [89945] (1)
Anticodon-binding domain of PheRS [54991] (1)
uperfamily
1. Anticodon-binding domain of PheRS [54992] (1)
  1. Phenylalanyl-tRNA synthetase [54993]
    1. Thermus thermophilus [TaxId: 274] [54994] (9)
      identical sequence to Thermus aquaticus, TaxId: 271
Ribosomal protein S6 [54995] (1)
uperfamily
1. Ribosomal protein S6 [54996] (4)
  1. Ribosomal protein S6 [54997]
    1. Thermus thermophilus [TaxId: 274] [54998] (54)
      SQ P23370
    2. Thermotoga maritima [TaxId: 2336] [117978] (1)
      SQ Q9WZ72
    3. Escherichia coli [TaxId: 562] [160317] (24)
      SQ P02358 1-100
    4. Aquifex aeolicus [TaxId: 63363] [160318] (1)
      SQ O66474 3-108
Ribosomal protein S10 [54999] (1)
uperfamily
1. Ribosomal protein S10 [55000] (2)
  1. Ribosomal protein S10 [55001]
    1. Thermus thermophilus [TaxId: 274] [55002] (45)
      SQ P80375
    2. Escherichia coli [TaxId: 562] [160319] (24)
      SQ P0A7R5 5-102
N-utilization substance G protein NusG, N-terminal domain [82679] (1)
uperfamily
1. N-utilization substance G protein NusG, N-terminal domain [82680] (2)
  1. N-utilization substance G protein NusG, N-terminal domain [82681]
    1. Aquifex aeolicus [TaxId: 63363] [82682] (4)
      interrupted by an insert beta-sandwich domain
    2. Thermus thermophilus [TaxId: 274] [102994] (1)
PAP/Archaeal CCA-adding enzyme, C-terminal domain [55003] (2)
uperfamily
1. Poly(A) polymerase, PAP, C-terminal domain [55004] (2)
  1. Poly(A) polymerase, PAP, C-terminal domain [55005]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55006] (7)
    2. Cow (Bos taurus) [TaxId: 9913] [55007] (3)
      SQ P25500 18-497
2. Archaeal tRNA CCA-adding enzyme [102995] (1)
  decorated fold with a large insertion
  1. tRNA nucleotidyltransferase, C-terminal domain [102996]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [102997] (28)
      SQ O28126
HMA, heavy metal-associated domain [55008] (1)
uperfamily
1. HMA, heavy metal-associated domain [55009] (12)
  1. Mercuric ion binding protein MerP [55010]
    1. Shigella flexneri [TaxId: 623] [55011] (3)
    2. Ralstonia metallidurans CH34 [TaxId: 266264] [110979] (1)
      SQ O66016 Q58AI1 Q5NUU9 Q6UP70 Q7BRH5 Q7BRH6 Q7X3A5 # 100% identity
  2. Potential copper-translocating P-type ATPase CopA (YvgX) [75441]
    duplication: contains tandem repeat of two HMA domains in the N-terminal region
    1. Bacillus subtilis [TaxId: 1423] [75442] (6)
  3. Metal ion-transporting ATPase ZntA, N-terminal domain [82683]
    1. Escherichia coli [TaxId: 562] [82684] (2)
  4. Copper transporter domain ccc2a [64279]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64280] (3)
  5. Menkes copper-transporting ATPase [55012]
    1. Human (Homo sapiens) [TaxId: 9606] [55013] (7)
  6. ATX1 metallochaperone protein (ATOX1) [55014]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55015] (5)
    2. Human (Homo sapiens), HAH1 [TaxId: 9606] [55016] (5)
      SQ O00244
  7. Copper chaperone [55017]
    1. Enterococcus hirae [TaxId: 1354] [55018] (1)
    2. Bacillus subtilis, CopZ [TaxId: 1423] [69736] (4)
    3. Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148] [102998] (1)
  8. Copper chaperone for superoxide dismutase, N-terminal domain [55019]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55020] (2)
Urease metallochaperone UreE, C-terminal domain [69737] (1)
uperfamily
1. Urease metallochaperone UreE, C-terminal domain [69738] (2)
  1. Urease metallochaperone UreE, C-terminal domain [69739]
    1. Klebsiella aerogenes [TaxId: 28451] [69740] (3)
    2. Bacillus pasteurii [TaxId: 1474] [69741] (2)
ACT-like [55021] (14)
regulatory domain linked to a wide range of metabolic enzymes
uperfamily
1. Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain [55022] (2)
  1. Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain [55023]
    1. Escherichia coli [TaxId: 562] [55024] (18)
    2. Mycobacterium tuberculosis [TaxId: 1773] [143374] (2)
      SQ P0A544 451-528
      there is an intervening domain between the substrate-binding domain and this domain
2. Allosteric threonine deaminase C-terminal domain [55025] (1)
  1. Allosteric threonine deaminase C-terminal domain [55026]
    duplication: consists of two homologous domains
    1. Escherichia coli [TaxId: 562] [55027] (1)
3. Phenylalanine metabolism regulatory domain [55028] (2)
  1. Phenylalanine hydroxylase N-terminal domain [55029]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55030] (2)
  2. Prephenate dehydratase C-terminal domain [160320]
    1. Staphylococcus aureus [TaxId: 1280] [160321] (2)
      SQ Q99SX2 185-264
4. Nickel responsive regulator NikR, C-terminal domain [102999] (2)
  1. Nickel responsive regulator NikR, C-terminal domain [103000]
    1. Escherichia coli [TaxId: 562] [103001] (21)
    2. Archaeon Pyrococcus horikoshii [TaxId: 53953] [143375] (12)
      SQ O58316 51-132
5. Glycine cleavage system transcriptional repressor [110980] (1)
  tandem repeat of two ACT-like domains; swapped domain dimer
  1. putative transcriptional repressor VC2159 [110981]
    1. Vibrio cholerae [TaxId: 666] [110982] (1)
      SQ Q9KQ45
6. IlvH-like [143376] (3)
  Duplication: tandem repeat of two ACT-like domains; dimer, the N- and C-terminal domains have different dimerisation modes
  1. Acetolactate synthase small subunit, IlvH [143377]
    1. Thermotoga maritima [TaxId: 2336] [143378] (2)
      SQ Q9WZ19 5-82! SQ Q9WZ19 83-165
    2. Escherichia coli [TaxId: 562] [143379] (4)
      SQ P00894 2-77! SQ P00894 78-163
    3. Nitrosomonas europaea [TaxId: 915] [143380] (8)
      SQ Q82UZ2 1-77! SQ Q82UZ2 78-163
7. SP0238-like [143381] (1)
  stand-alone protein; dimer, the dimerization interface is formed by parallel packing of the subunit beta-sheets
  1. UPF0237 protein SP0238 [143382]
    1. Streptococcus pneumoniae [TaxId: 1313] [143383] (3)
      SQ P67382 1-83
8. Atu0741-like [143384] (1)
  duplication: tandem repeat of two ACT-like domains; contains strand invasion of extra N-terminal strand into the C-terminal domain beta-sheet; dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein Atu0741 [143385]
    1. Agrobacterium tumefaciens [TaxId: 358] [143386] (2)
      SQ Q8UHE1 2-61! SQ Q8UHE1 62-127
9. VC0802-like [143387] (1)
  duplication: tandem repeat of two ACT-like domains; contains circular permutation (the C-terminal strand replacement with extra N-terminal strand); dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein VC0802 [143388]
    1. Vibrio cholerae [TaxId: 666] [143389] (8)
      SQ Q9KTT6 2-67! SQ Q9KTT6 68-131
10. Aspartokinase allosteric domain-like [143390] (3)
  duplication: tandem repeat of two ACT-like domains; similar subunit and oligomeric structures to the VC0802-like family
  1. Aspartokinase [143391]
    1. Methanococcus jannaschii [TaxId: 2190] [143392] (8)
      SQ Q57991 304-403! SQ Q57991 404-470
    2. Escherichia coli [TaxId: 562] [143393] (6)
      SQ P08660 295-385! SQ P08660 386-449
      Lysine-sensitive aspartokinase 3
    3. Thale cress (Arabidopsis thaliana) [TaxId: 3702] [143394] (4)
      SQ Q9LYU8 388-478! SQ Q9LYU8 479-553
11. BT0572-like [143395] (1)
  duplication: tandem repeat of two ACT-like domains; dimerizes with the formation of orthogonally packed intersubunit beta-sheets
  1. Hypothetical protein BT0572 [143396]
    1. Bacteroides thetaiotaomicron [TaxId: 818] [143397] (4)
      SQ Q8AA93 1-70! SQ Q8AA93 71-141
12. AF1403 N-terminal domain-like [143398] (1)
  dimerizes with the formation of a single intersubunit beta-sheet
  1. Hypothetical protein AF1403, N-terminal domain [143399]
    1. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [143400] (3)
      SQ O28869 2-78
13. NIL domain-like [160322] (4)
  Pfam 09383
  1. Methionine import ATP-binding protein MetN [160323]
    1. Vibrio parahaemolyticus [TaxId: 670] [160324] (2)
      SQ Q87RS1 248-344
    2. Escherichia coli [TaxId: 562] [160325] (6)
      SQ P30750 241-343! SQ P30750 247-343
  2. Methionine import ATP-binding protein MetN2 [160326]
    1. Enterococcus faecalis [TaxId: 1351] [160327] (1)
      SQ Q831K6 256-345
    2. Staphylococcus aureus [TaxId: 1280] [160328] (3)
      SQ Q99VG8 247-341
14. TM1266-like [160329] (1)
  PfamB 015436; stand-alone tetrameric protein; there are single beta-sheet dimers, whose beta-sheets are packed in parallel fasion in the tetramer
  1. Hypothetical protein TM1266 [160330]
    1. Thermotoga maritima [TaxId: 2336] [160331] (4)
      SQ Q9X0Z3 2-81
Bacterial exopeptidase dimerisation domain [55031] (1)
uperfamily
1. Bacterial exopeptidase dimerisation domain [55032] (9)
  1. Carboxypeptidase G2 [55033]
    dimerisation mode is similar to that of 1PSD domain
    1. Pseudomonas sp., strain rs-16 [TaxId: 306] [55034] (1)
  2. Peptidase T (tripeptidase) [75443]
    1. Salmonella typhimurium [TaxId: 90371] [75444] (1)
    2. Escherichia coli [TaxId: 562] [103002] (1)
  3. Peptidase-like beta-alanine synthase [103003]
    1. Yeast (Saccharomyces kluyveri) [TaxId: 4934] [103004] (2)
  4. Succinyl-diaminopimelate desuccinylase [103005]
    1. Neisseria meningitidis [TaxId: 487] [103006] (1)
  5. IAA-amino acid hydrolase [117979]
    apparently monomeric
    1. Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702] [117980] (2)
      SQ P54970 37-428
  6. Aminopeptidase PepV [82685]
    contains insert sudbomain 205-292 mimicking the other half of the family-specific dimer
    1. Lactobacillus delbrueckii [TaxId: 1584] [82686] (1)
  7. Allantoate amidohydrolase AllC [143401]
    1. Escherichia coli [TaxId: 562] [143402] (4)
      SQ P77425 211-327
  8. Protein YxeP [143403]
    dimeric protein closely related to IAA-amino acid hydrolase
    1. Bacillus subtilis [TaxId: 1423] [143404] (2)
      SQ P54955 178-292
NAD-binding domain of HMG-CoA reductase [55035] (1)
uperfamily
1. NAD-binding domain of HMG-CoA reductase [55036] (2)
  1. NAD-binding domain of HMG-CoA reductase [55037]
    1. Human (Homo sapiens) [TaxId: 9606] [55038] (9)
    2. Pseudomonas mevalonii [TaxId: 32044] [55039] (5)
      SQ P13702 4-377
Molybdenum cofactor biosynthesis protein C, MoaC [55040] (1)
uperfamily
1. Molybdenum cofactor biosynthesis protein C, MoaC [55041] (1)
  1. Molybdenum cofactor biosynthesis protein C, MoaC [55042]
    1. Escherichia coli [TaxId: 562] [55043] (2)
TRADD, N-terminal domain [55044] (1)
uperfamily
1. TRADD, N-terminal domain [55045] (1)
  1. TRADD, N-terminal domain [55046]
    1. Human (Homo sapiens) [TaxId: 9606] [55047] (2)
Probable ACP-binding domain of malonyl-CoA ACP transacylase [55048] (1)
uperfamily
1. Probable ACP-binding domain of malonyl-CoA ACP transacylase [55049] (2)
  1. Probable ACP-binding domain of malonyl-CoA ACP transacylase [55050]
    1. Escherichia coli [TaxId: 562] [55051] (1)
    2. Streptomyces coelicolor A3(2) [TaxId: 100226] [82687] (1)
CheY-binding domain of CheA [55052] (1)
uperfamily
1. CheY-binding domain of CheA [55053] (2)
  1. CheY-binding domain of CheA [55054]
    1. Escherichia coli [TaxId: 562] [55055] (6)
    2. Thermotoga maritima [TaxId: 2336] [110983] (1)
      SQ Q56310 175-260
      structurally distinct from the E.coli domain and possesses a different CheY-binding mode
D-ribose-5-phosphate isomerase (RpiA), lid domain [75445] (1)
uperfamily
1. D-ribose-5-phosphate isomerase (RpiA), lid domain [75446] (4)
  1. D-ribose-5-phosphate isomerase (RpiA), lid domain [75447]
    1. Escherichia coli [TaxId: 562] [75448] (3)
    2. Haemophilus influenzae [TaxId: 727] [82688] (1)
    3. Archaeon Pyrococcus horikoshii [TaxId: 53953] [75449] (2)
    4. Thermus thermophilus [TaxId: 274] [110984] (3)
      SQ Q72J47
Killer toxin KP6 alpha-subunit [55056] (1)
uperfamily
1. Killer toxin KP6 alpha-subunit [55057] (1)
  1. Killer toxin KP6 alpha-subunit [55058]
    1. Smut fungus (Ustilago maydis) [TaxId: 5270] [55059] (1)
Hypothetical protein VC0424 [89946] (1)
uperfamily
1. Hypothetical protein VC0424 [89947] (1)
  1. Hypothetical protein VC0424 [89948]
    1. Vibrio cholerae [TaxId: 666] [89949] (1)
Hypothetical protein TT1725 [103007] (1)
uperfamily
1. Hypothetical protein TT1725 [103008] (1)
  1. Hypothetical protein TT1725 [103009]
    1. Thermus thermophilus [TaxId: 274] [103010] (1)
      structural genomics
Mechanosensitive channel protein MscS (YggB), C-terminal domain [82689] (1)
the last strand of the fold is flipped away and involved in oligomerisation
uperfamily
1. Mechanosensitive channel protein MscS (YggB), C-terminal domain [82690] (1)
  1. Mechanosensitive channel protein MscS (YggB), C-terminal domain [82691]
    1. Escherichia coli [TaxId: 562] [82692] (14)
GHMP Kinase, C-terminal domain [55060] (7)
common fold is elaborated with additional secondary structures
uperfamily
1. Galactokinase [103011] (3)
  1. Galactokinase [103012]
    1. Lactococcus lactis [TaxId: 1358] [103013] (1)
    2. Archaeon Pyrococcus furiosus [TaxId: 2261] [103014] (1)
    3. Human (Homo sapiens) [TaxId: 9606] [117981] (1)
      SQ P51570
2. Homoserine kinase [55061] (1)
  1. Homoserine kinase [55062]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [55063] (5)
3. Mevalonate kinase [75450] (2)
  1. Mevalonate kinase [75451]
    1. Archaeon Methanococcus jannaschii [TaxId: 2190] [75452] (2)
    2. Rat (Rattus norvegicus) [TaxId: 10116] [75453] (2)
4. Phosphomevalonate kinase (PMK) [75454] (1)
  1. Phosphomevalonate kinase (PMK) [75455]
    1. Streptococcus pneumoniae r6 [TaxId: 171101] [75456] (1)
5. Mevalonate 5-diphosphate decarboxylase [64281] (1)
  1. Mevalonate 5-diphosphate decarboxylase [64282]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64283] (1)
6. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89950] (2)
  1. 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE [89951]
    1. Thermus thermophilus [TaxId: 274] [89952] (1)
    2. Escherichia coli [TaxId: 562] [103015] (1)
7. Early switch protein XOL-1 [89953] (1)
  lost the ATP-binding site
  1. Early switch protein XOL-1 [89954]
    primary determinant of sexual fate in C. elegans
    1. Nematode (Caenorhabditis elegans) [TaxId: 6239] [89955] (1)
Translational regulator protein regA [55064] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Translational regulator protein regA [55065] (1)
  1. Translational regulator protein regA [55066]
    1. Bacteriophage T4 [TaxId: 10665] [55067] (1)
Peptide methionine sulfoxide reductase [55068] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Peptide methionine sulfoxide reductase [55069] (3)
  1. Peptide methionine sulfoxide reductase [55070]
    1. Cow (Bos taurus) [TaxId: 9913] [55071] (2)
    2. Escherichia coli [TaxId: 562] [55072] (2)
    3. Mycobacterium tuberculosis [TaxId: 1773] [89956] (1)
Nucleotide cyclase [55073] (2)
common fold is elaborated with additional secondary structures
uperfamily
1. Adenylyl and guanylyl cyclase catalytic domain [55074] (5)
  Pfam 00211
  structurally similar to the "palm" domain of DNA/RNA polymerase superfamily
  1. Type II adenylyl cyclase C2 domain [55075]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55076] (5)
      SQ P26769 879-1077
  2. Adenylyl cyclase VC1, domain C1a [55077]
    1. Dog (Canis familiaris) [TaxId: 9615] [55078] (11)
      SQ P30803 458-646
  3. Adenylyl cyclase IIC1, domain C2a [55079]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [55080] (7)
  4. Receptor-type monomeric adenylyl cyclase [55081]
    1. Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691] [55082] (2)
  5. Adenylate cyclase CyaC [117982]
    1. Spirulina platensis [TaxId: 118562] [117983] (6)
      SQ O32393 1004-1200
2. GGDEF domain [117984] (1)
  Pfam 00990; less decorated than the adenylyl/guanylyl cyclase domain
  1. Response regulator PleD, C-terminal domain [117985]
    Diguanylate cyclase
    1. Caulobacter crescentus [TaxId: 155892] [117986] (3)
      SQ Q9A5I5
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55083] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55084] (2)
  1. 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK [55085]
    1. Escherichia coli [TaxId: 562] [55086] (19)
      SQ P26281
    2. Haemophilus influenzae [TaxId: 727] [55087] (1)
Glutamyl tRNA-reductase catalytic, N-terminal domain [69742] (1)
common fold is elaborated with additional secondary structures
uperfamily
1. Glutamyl tRNA-reductase catalytic, N-terminal domain [69743] (1)
  1. Glutamyl tRNA-reductase catalytic, N-terminal domain [69744]
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [69745] (1)
MTH1187/YkoF-like [89957] (2)
uperfamily
1. MTH1187-like [89958] (5)
  Pfam 01910; two domains form a single beta-sheet dimer; two dimers pack sheet-to-sheet in a tetramer; contains extra C-terminal helix
  1. Hypothetical protein MTH1187 [89959]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [89960] (1)
  2. Hypothetical protein YB1001C [89961]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89962] (1)
  3. Hypothetical protein TM0486 [110985]
    1. Thermotoga maritima [TaxId: 2336] [110986] (1)
      SQ Q9WYV6
  4. Hypothetical protein BC0424 [143405]
    1. Bacillus cereus [TaxId: 1396] [143406] (2)
      SQ Q81IG4 1-101
  5. Hypothetical protein SP2199 [143407]
    1. Streptococcus pneumoniae [TaxId: 1313] [143408] (4)
      SQ Q97N67 1-90
2. Putative thiamin/HMP-binding protein YkoF [110987] (1)
  duplication: one subunit consists of two domains assembled as in the MHT1178-like dimer
  1. Putative thiamin/HMP-binding protein YkoF [110988]
    1. Bacillus subtilis [TaxId: 1423] [110989] (3)
      SQ O34911
Methyl-coenzyme M reductase subunits [55088] (2)
each of the three different subunits, alpha, beta and gamma, contains this fold decorated with additional secondary structures
uperfamily
1. Methyl-coenzyme M reductase gamma chain [55089] (3)
  1. Methyl-coenzyme M reductase gamma chain [55090]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55091] (5)
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55092] (1)
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55093] (1)
2. Methyl-coenzyme M reductase alpha and beta chain N-terminal domain [55094] (6)
  C-terminal domain is all-alpha
  1. Alpha chain [55095]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55096] (5)
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55097] (1)
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55098] (1)
  2. Beta chain [55099]
    1. Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] [55100] (5)
    2. Archaeon Methanopyrus kandleri [TaxId: 2320] [55101] (1)
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [55102] (1)
FAD-linked oxidases, C-terminal domain [55103] (4)
duplication: contains two subdomains of this fold
uperfamily
1. Vanillyl-alcohol oxidase-like [55104] (2)
  1. Vanillyl-alcohol oxidase [55105]
    1. Fungus (Penicillium simplicissimum) [TaxId: 69488] [55106] (16)
      SQ P56216
  2. Flavoprotein subunit of p-cresol methylhydroxylase [55107]
    the other subunit is a short-chain cytochrome c
    1. Pseudomonas putida [TaxId: 303] [55108] (5)
2. D-lactate dehydrogenase [55109] (1)
  1. D-lactate dehydrogenase [55110]
    1. Escherichia coli [TaxId: 562] [55111] (1)
3. Cholesterol oxidase [64284] (1)
  1. Cholesterol oxidase [64285]
    1. Brevibacterium sterolicum [TaxId: 1702] [64286] (2)
4. Cytokinin dehydrogenase 1 [110990] (1)
  1. Cytokinin dehydrogenase 1 [110991]
    1. Maize (Zea mays) [TaxId: 4577] [110992] (4)
      SQ Q9T0N8
Formylmethanofuran:tetrahydromethanopterin formyltransferase [55112] (1)
duplication: contains two subdomains of this fold
uperfamily
1. Formylmethanofuran:tetrahydromethanopterin formyltransferase [55113] (3)
  1. Formylmethanofuran:tetrahydromethanopterin formyltransferase [55114]
    1. Archaeon Methanopyrus kandleri [TaxId: 2320] [55115] (17)
    2. Archaeon Archaeoglobus fulgidus [TaxId: 2234] [75457] (1)
    3. Archaeon Methanosarcina barkeri [TaxId: 2208] [75458] (1)
Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55116] (1)
duplication: contains two subdomains of this fold
uperfamily
1. Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55117] (1)
  1. Formiminotransferase domain of formiminotransferase-cyclodeaminase. [55118]
    1. Pig (Sus scrofa) [TaxId: 9823] [55119] (1)
Nitrite/Sulfite reductase N-terminal domain-like [55124] (2)
duplication: contains two subdomains of this fold
uperfamily
1. Duplicated SiR/NiR-like domains 1 and 3 [55125] (3)
  1. Sulfite reductase, domains 1 and 3 [55126]
    1. Escherichia coli [TaxId: 562] [55127] (12)
  2. Ferredoxin--nitrite reductase, NIR [160332]
    1. Spinach (Spinacia oleracea) [TaxId: 3562] [160333] (2)
      SQ P05314 378-462! SQ P05314 54-206
  3. Sulfite reductase NirA [160334]
    1. Mycobacterium tuberculosis [TaxId: 1773] [160335] (8)
      SQ P71753 10-161! SQ P71753 327-406
2. DsrA/DsrB N-terminal-domain-like [160336] (4)
  Dissimilatory sulfite reductase is a heterodimer of homologous DsrA and DsrB subunits, the assembly of which is similar to the architecture of duplicated sulfite reductase CysI
  1. Dissimilatory sulfite reductase subunit alpha, DsrA [160337]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160338] (2)
      SQ Q59109 2-418
    2. Desulfovibrio vulgaris [TaxId: 881] [160339] (2)
      SQ P45574 2-437
  2. Dissimilatory sulfite reductase subunit beta, DsrB [160340]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160341] (2)
      SQ Q59110 4-122
    2. Desulfovibrio vulgaris [TaxId: 881] [160342] (2)
      SQ P45575 2-381
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82693] (1)
duplication: the N- and C-terminal halves of the whole proteins are structurally similar; each half contains two domains of this fold
uperfamily
1. Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82694] (1)
  1. Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains [82695]
    PN2 and PC2 subdomains are interrupted by the inserted subdomains DN and DC, respectively
    1. Escherichia coli [TaxId: 562] [82696] (6)
YajQ-like [89963] (1)
duplication: consists of two domains of this fold swapped with their N-terminal strands
uperfamily
1. YajQ-like [89964] (1)
  1. Hypothetical protein HI1034 [89965]
    1. Haemophilus influenzae [TaxId: 727] [89966] (1)
eIF-2-alpha, C-terminal domain [110993] (1)
uperfamily
1. eIF-2-alpha, C-terminal domain [110994] (2)
  1. eIF-2-alpha, C-terminal domain [110995]
    1. Human (Homo sapiens) [TaxId: 9606] [110996] (1)
      SQ P05198
    2. Sulfolobus solfataricus [TaxId: 2287] [143409] (3)
      SQ Q97Z79 176-264
Sporulation related repeat [110997] (1)
duplication: one domain contains two repeats of similar sequence and structure
uperfamily
1. Sporulation related repeat [110998] (1)
  Pfam 05036; SPOR
  1. Cell division protein FtsN [110999]
    1. Escherichia coli [TaxId: 562] [111000] (1)
      SQ P29131 243-319
CRISPR-associated protein [117987] (1)
duplication: contains two subdomains of this fold
uperfamily
1. CRISPR-associated protein [117988] (1)
  1. Hypothetical protein TTHB192 [117989]
    1. Thermus thermophilus [TaxId: 274] [117990] (1)
      SQ Q53WG9
YbeD/HP0495-like [117991] (2)
uperfamily
1. YbeD-like [117992] (1)
  Pfam 04359; DUF493
  1. Hypothetical protein ybeD [117993]
    1. Escherichia coli [TaxId: 562] [117994] (1)
      SQ P0A8J4
2. HP0495-like [160343] (1)
  PfamB 045675
  1. Hypothetical protein HP0495 [160344]
    1. Helicobacter pylori [TaxId: 210] [160345] (2)
      SQ O25237 1-86
DOPA-like [143410] (1)
probable biological unit is homodimer; the extra C-terminal strand, adjacent and antiparallel to strand 4, contributes to the dimerisation interface
uperfamily
1. DOPA dioxygenase-like [143411] (1)
  Pfam 08883
  1. Putative dioxygenase BxeB0224 [143412]
    Bxeno_B2751
    1. Burkholderia xenovorans [TaxId: 36873] [143413] (6)
      SQ Q13JM0 1-115
CcmK-like [143414] (1)
contains extra C-terminal helix; forms compact hexameric 'tiles' of hexagonal shape
uperfamily
1. CcmK-like [143415] (3)
  Pfam 00936; BMC domain
  1. Major carboxysome shell protein 1A, CsoS1A [143416]
    1. Halothiobacillus neapolitanus [TaxId: 927] [143417] (2)
      SQ P45689 5-97
  2. Carboxysome shell protein CcmK4 [143418]
    1. Synechocystis sp. PCC 6803 [TaxId: 1148] [143419] (9)
      SQ P73407 3-106
  3. Carboxysome shell protein CcmK2 [143420]
    1. Synechocystis sp. PCC 6803 [TaxId: 1148] [143421] (12)
      SQ P72761 1-101
Transposase IS200-like [143422] (1)
contains extra N-terminal hairpin and C-terminal helix, both are involved in dimerization; there can be helix-swapping in the dimer
uperfamily
1. Transposase IS200-like [143423] (3)
  Pfam 01797
  1. Putative transposase SSO1474 [143424]
    1. Archaeon Sulfolobus solfataricus [TaxId: 2287] [143425] (4)
      SQ Q97Y68 2-131
  2. ISHP608 transposase [143426]
    1. Helicobacter pylori [TaxId: 210] [143427] (14)
      SQ Q933Z0 4-133
  3. Putative transposase DR0177 [143428]
    1. Deinococcus radiodurans [TaxId: 1299] [143429] (2)
      SQ Q9RXX8 1-130
TTP0101/SSO1404-like [143430] (1)
contains extra C-terminal beta-strand that integrates into the beta-sheet of the other subunit in the homodimer, a probable biological unit of this superfamily
uperfamily
1. TTP0101/SSO1404-like [143431] (3)
  Pfam 02647; DUF196; this family includes recent structure of SSO1404 (PDB entry 2IVY)
  1. Hypothetical protein TTP0101 (TT1823) [143432]
    1. Thermus thermophilus [TaxId: 274] [143433] (1)
      SQ Q746F4 2-83
  2. Hypothetical protein PF1117 [160346]
    1. Pyrococcus furiosus [TaxId: 2261] [160347] (1)
      SQ Q8U1T8 1-84
  3. Hypothetical protein SSO1404 [160348]
    predicted DNA repair associated protein
    1. Sulfolobus solfataricus [TaxId: 2287] [160349] (2)
      SQ Q97YC2 2-89
Rnp2-like [160350] (1)
contains extra C-terminal helix
1. Rpp14/Pop5-like [160351] (2)
  Pfam 01900
  1. RNase P protein component 2, Rnp2 [160352]
    1. Pyrococcus horikoshii [TaxId: 53953] [160353] (2)
      SQ O59150 3-120
    2. Pyrococcus furiosus [TaxId: 2261] [160354] (5)
      SQ Q8U151 15-120
Bacterial polysaccharide co-polymerase-like [160355] (1)
Decorated common fold with extra helical regions, which facilitate oligomerization
1. FepE-like [160356] (3)
  the ferredoxin-like fold resides mainly on in the N-terminal part that corresponds to Pfam 02706 (Wzz)
  1. Chain length determinant protein WzzB [160357]
    1. Salmonella typhimurium [TaxId: 90371] [160358] (5)
      SQ Q04866 54-292
  2. Lipopolysaccharide biosynthesis protein WzzE [160359]
    1. Escherichia coli [TaxId: 562] [160360] (8)
      SQ P0AG01 54-318
  3. Enterochelin transport protein FepE [160361]
    1. Escherichia coli [TaxId: 562] [160362] (12)
      SQ Q8XBV8 64-330! SQ Q8XBV8 65-330
MTH889-like [160363] (1)
assembles into hexameric ring-like structures with the formation of a singe beta-barrel sheet of 24 strands
1. MTH889-like [160364] (2)
  Pfam 02680; DUF211, COG1888
  1. Uncharacterized protein MTH889 [160365]
    1. Methanobacterium thermoautotrophicum [TaxId: 145262] [160366] (7)
      SQ O26975 3-95
  2. Uncharacterized protein AF1549 [160367]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160368] (14)
      SQ O28723 1-91
Ribosomal protein L10-like [160369] (1)
consists of globular N-terminal domain, structurally similar to NDK, and the L7/L12-binding C-terminal alpha-helical tail
1. Ribosomal protein L10-like [160370] (1)
  Pfam 00466; covers globular domain only
  1. Ribosomal protein L10 [160371]
    see also scop_pr 64661 for a partial structure in the ribosome
    1. Thermotoga maritima [TaxId: 2336] [160372] (3)
      SQ P29394 1-177