Structural Classification of Proteins
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Superfamily: Dimeric alpha+beta barrel

dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Ferredoxin-like [54861]
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. Superfamily: Dimeric alpha+beta barrel [54909]
    dimerizes through the beta-sheet; forms beta-sheet barrel, closed (n=8, S=12); dimers may assemble in higher oligomers
    link to SUPERFAMILY database - Superfamily

Families:

  1. Actinorhodin biosynthesis monooxygenase ActVa-Orf6 [82666] (1) picpic
  2. Plant stress-induced protein [89927] (3) picpic
  3. PG130-like [102959] (5) picpic
    subfamily of Pfam 03992
  4. Hypothetical protein YjcS [102962] (1) picpic
  5. YciI-like [102965] (1) picpic
    structural similarity to MLI extends to the active site cavity location
  6. Muconalactone isomerase, MLI [54910] (1) picpic
    decamer: pentamer of dimers
  7. Lrp/AsnC-like transcriptional regulator C-terminal domain [69733] (4) picpic
    octamer: tetramer of dimers
  8. Polyketide synthesis cyclase [110959] (1) picpic
    Pfam 04673
  9. DGPF domain (Pfam 04946) [110962] (1) picpic
    there is the putative active site cavity in the equivalent location location to the MLI and YciI active sites
  10. Chlorite dismutase-like [110965] (2) picpic
    Pfam 06778; duplication: consists of two similar domains; forms a pentamer similar to the MLI decamer
  11. PA3566-like [110970] (5) picpic
    subfamily of Pfam 03992
  12. Hypothetical protein YdhR [117940] (1) picpic
  13. NIPSNAP [117943] (2) picpic
    Pfam 07978
  14. Dyp-type peroxidase-like [143265] (3) picpic
    Pfam 04261
  15. EthD-like [143272] (1) picpic
    Pfam 07110
  16. Atu0297-like [143275] (1) picpic
    Pfam 07045; DUF1330
  17. SOR-like [143278] (1) picpic
    Pfam 07682; duplication: consists of two similar domains
  18. YbaA-like [160289] (1) picpic
    Pfam 07237; DUF1428
  19. MmlI-like [160292] (1) picpic
    Pfam 09448; Methylmuconolactone methyl-isomerase
  20. Marine metagenome family DABB2 [160295] (1) picpic
  21. YiiL-like [160298] (1) picpic
    Pfam 05336; DUF718
  22. Marine metagenome family DABB1 [160301] (2) picpic
  23. Marine metagenome family DABB3 [160306] (1) picpic
    duplication: consists of two similar domains; forms a pentamer similar to the Chlorite dismutase-like pentamer and the MLI decamer
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk