Structural Classification of Proteins
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Protein: Cytochrome bc1 core subunit 2 from Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: LuxS/MPP-like metallohydrolase [63410]
    core: beta-alpha-beta(2)-alpha(2); 2 layers: alpha/beta
  4. Superfamily: LuxS/MPP-like metallohydrolase [63411]
    Share the same "active site motif" HxxEH located in the first core helix, but differ in one of the zinc-binding residues
    link to SUPERFAMILY database - Superfamily
  5. Family: MPP-like [63412]
    Common fold elaborated with many additional structures; duplication: each family member consists of two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)-beta structure, but only the N-terminal domain of MPP beta chain binds the catalytic metal
  6. Protein: Cytochrome bc1 core subunit 2 [63409]
  7. Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64305]

PDB Entry Domains:

  1. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb1
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region b:17-218 [157078] picpiclink
  2. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb2
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region b:219-368 [157079] picpiclink
  3. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb1
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region m:17-218 [157094] picpiclink
  4. 3cx5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb2
    complexed with 6ph, 7ph, 8pe, 9pe, cn3, cn5, fes, hem, m3l, sma, suc, umq
    1. region m:219-368 [157095] picpiclink
  5. 1kb9 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with cdl, fes, hem, pcf, pef, pie, sma, umq, uq6
    1. region b:17-218 [77313] picpiclink
    2. region b:219-368 [77314] picpiclink
  6. 2ibz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb1
    complexed with fes, hem, sma, uq6
    1. region b:17-218 [137217] picpiclink
  7. 2ibz picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb2
    complexed with fes, hem, sma, uq6
    1. region b:219-368 [137218] picpiclink
  8. 1ezv picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with fes, hem, sma, uq6
    1. region b:17-218 [59543] picpiclink
    2. region b:219-368 [59544] picpiclink
  9. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb1
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region b:17-218 [157111] picpiclink
  10. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb2
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region b:219-368 [157112] picpiclink
  11. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb1
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region m:17-218 [157127] picpiclink
  12. 3cxh picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to d1ezvb2
    complexed with 6ph, 7ph, 8pe, 9pe, cn6, fes, hem, m3l, sma, suc, umq
    1. region m:219-368 [157128] picpiclink
  13. 1p84 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with 3pe, 3ph, cdl, dbt, fes, hem, pc1, umq, uq6
    1. region b:17-218 [87852] picpiclink
    2. region b:219-368 [87853] picpiclink
  14. 1kyo picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with fes, hem, m3l, sma
    1. region b:17-218 [73251] picpiclink
    2. region b:219-368 [73252] picpiclink
    3. region m:17-218 [73266] picpiclink
    4. region m:219-368 [73267] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk