Structural Classification of Proteins
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Fold: Dodecin subunit-like

beta-alpha-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 132

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Dodecin subunit-like [88797]
    beta-alpha-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 132

Superfamilies:

  1. Dodecin-like [89807] (1)
    link to SUPERFAMILY database - Superfamily
    1. Dodecin-like [89808] (2)
      Subunit assembly and a probable biological unit is a dodecamer, hence the name
      1. Flavin-binding protein dodecin [89809]
        1. Archaeon Halobacterium salinarum [TaxId: 2242] [89810] (12)
          1. 2cc6 picpic
            automatically matched to d1moga_
            complexed with cl, lum, mg, na, so4
            1. region a:2-65 [130218] picpiclink
          2. 2cc9 picpic
            automatically matched to d1moga_
            complexed with cl, mg, na, so4
            1. region a:2-65 [130221] picpiclink
          3. 2vkf picpic
            complexed with cf2, cl, mg, na, so4; mutant
            1. region a:2-63 [153223] picpiclink
          4. 1mog picpic
            complexed with cl, mg, na, rbf
            1. chain a [85034] picpiclink
          5. 2ccc picpic
            automatically matched to d1moga_
            complexed with cl, lfn, mg, na, so4
            1. region a:2-65 [130227] picpiclink
          6. 2vkg picpic
            automatically matched to 2VKF A:2-63
            complexed with cf4, cl, mg, na, so4; mutant
            1. region a:2-63 [153224] picpiclink
          7. 2ccb picpic
            automatically matched to d1moga_
            complexed with cl, mg, na, rbf, so4
            1. region a:2-65 [130226] picpiclink
          8. 2cc7 picpic
            automatically matched to d1moga_
            complexed with cl, lum, mg, na, so4
            1. region a:2-65 [130219] picpiclink
          9. 2cie picpic
            automatically matched to d1moga_
            complexed with cl, fad, mg, na, so4
            1. region a:2-65 [130488] picpiclink
          10. 2cc8 picpic
            automatically matched to d1moga_
            complexed with cl, mg, na, rbf, so4
            1. region a:2-65 [130220] picpiclink
          11. 2cjc picpic
            automatically matched to d1moga_
            complexed with cl, fad, mg, na, so4
            1. region a:2-65 [130525] picpiclink
          12. 2cif picpic
            automatically matched to d1moga_
            complexed with cl, fad, mg, na, so4
            1. region a:2-65 [130489] picpiclink
      2. Uncharacterized protein TTHA1431 [159869]
        1. Thermus thermophilus [TaxId: 274] [159870] (62)
          SQ Q5SIE3 2-67! SQ Q5SIE3 2-68
          1. 2ux9 picpic
            complexed with coa, fmn, na, po4; mutant
            1. region a:2-67 [152258] picpiclink
          2. 2ux9 picpic
            automatically matched to 2UX9 A:2-67
            complexed with coa, fmn, na, po4; mutant
            1. region b:2-67 [152259] picpiclink
          3. 2ux9 picpic
            automatically matched to 2UX9 A:2-67
            complexed with coa, fmn, na, po4; mutant
            1. region c:2-67 [152260] picpiclink
          4. 2ux9 picpic
            automatically matched to 2UX9 A:2-67
            complexed with coa, fmn, na, po4; mutant
            1. region d:2-67 [152261] picpiclink
          5. 2ux9 picpic
            automatically matched to 2UX9 A:2-67
            complexed with coa, fmn, na, po4; mutant
            1. region e:2-67 [152262] picpiclink
          6. 2ux9 picpic
            automatically matched to 2UX9 A:2-67
            complexed with coa, fmn, na, po4; mutant
            1. region f:2-67 [152263] picpiclink
          7. 2cz8 picpic
            complexed with fad, k, po4
            1. region a:2-68 [146432] picpiclink
          8. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region b:3-68 [146433] picpiclink
          9. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region c:2-68 [146434] picpiclink
          10. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region d:2-68 [146435] picpiclink
          11. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region e:2-68 [146436] picpiclink
          12. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region f:3-68 [146437] picpiclink
          13. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region g:2-68 [146438] picpiclink
          14. 2cz8 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fad, k, po4
            1. region h:2-68 [146439] picpiclink
          15. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region a:2-68 [146492] picpiclink
          16. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region b:2-68 [146493] picpiclink
          17. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region c:2-68 [146494] picpiclink
          18. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region d:2-68 [146495] picpiclink
          19. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region e:2-68 [146496] picpiclink
          20. 2deg picpic
            automatically matched to 2CZ8 A:2-68
            complexed with gol, mn, na
            1. region f:2-68 [146497] picpiclink
          21. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region a:2-68 [152413] picpiclink
          22. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region b:2-68 [152414] picpiclink
          23. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region c:2-68 [152415] picpiclink
          24. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region d:2-68 [152416] picpiclink
          25. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region e:2-68 [152417] picpiclink
          26. 2v21 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with fmn, na
            1. region f:2-68 [152418] picpiclink
          27. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region a:2-68 [152384] picpiclink
          28. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region b:2-68 [152385] picpiclink
          29. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region c:2-68 [152386] picpiclink
          30. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region d:2-68 [152387] picpiclink
          31. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region e:2-68 [152388] picpiclink
          32. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region f:2-68 [152389] picpiclink
          33. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region g:2-68 [152390] picpiclink
          34. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region h:2-68 [152391] picpiclink
          35. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region i:2-68 [152392] picpiclink
          36. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region j:2-68 [152393] picpiclink
          37. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region k:2-68 [152394] picpiclink
          38. 2v18 picpic
            automatically matched to 2CZ8 A:2-68
            complexed with coa, fmn
            1. region l:2-68 [152395] picpiclink
          39. 2v19 picpic
            complexed with cl, coa, fmn; mutant
            1. region a:2-68 [152396] picpiclink
          40. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region a:2-68 [146498] picpiclink
          41. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region b:2-68 [146499] picpiclink
          42. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region c:2-68 [146500] picpiclink
          43. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region d:2-68 [146501] picpiclink
          44. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region e:2-68 [146502] picpiclink
          45. 2deh picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, na
            1. region f:2-68 [146503] picpiclink
          46. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region b:2-68 [152397] picpiclink
          47. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region c:2-68 [152398] picpiclink
          48. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region d:2-68 [152399] picpiclink
          49. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region e:2-68 [152400] picpiclink
          50. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region f:2-68 [152401] picpiclink
          51. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region g:2-68 [152402] picpiclink
          52. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region h:2-68 [152403] picpiclink
          53. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region i:2-68 [152404] picpiclink
          54. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region j:2-68 [152405] picpiclink
          55. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region k:2-68 [152406] picpiclink
          56. 2v19 picpic
            automatically matched to 2V19 A:2-68
            complexed with cl, coa, fmn; mutant
            1. region l:2-68 [152407] picpiclink
          57. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region a:2-68 [146504] picpiclink
          58. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region b:2-68 [146505] picpiclink
          59. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region c:2-68 [146506] picpiclink
          60. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region d:2-68 [146507] picpiclink
          61. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region e:2-68 [146508] picpiclink
          62. 2dev picpic
            automatically matched to 2CZ8 A:2-68
            complexed with cl, cs, na
            1. region f:2-68 [146509] picpiclink
  2. Amyloid beta a4 protein copper binding domain (domain 2) [89811] (1)
    link to SUPERFAMILY database - Superfamily
    1. Amyloid beta a4 protein copper binding domain (domain 2) [89812] (1)
      1. Amyloid beta a4 protein copper binding domain (domain 2) [89813]
        1. Human (Homo sapiens) [TaxId: 9606] [89814] (3)
          1. 2fkl picpic
            automatically matched to d1owta_
            1. region a:126-189 [133658] picpiclink
          2. 2fkl picpic
            automatically matched to d1owta_
            1. region b:126-189 [133659] picpiclink
          3. 1owt picpic
            1. chain a [87493] picpiclink
  3. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88798] (1)
    link to SUPERFAMILY database - Superfamily
    1. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88799] (3)
      1. N-terminal, heterodimerisation domain of RBP7 (RpoE) [88800]
        1. Archaeon Methanococcus jannaschii [TaxId: 2190] [88801] (1)
          1. 1go3 picpicxrefxref
            1. region e:1-78 [83055] picpiclink
            2. region m:1-78 [83057] picpiclink
        2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [117777] (7)
          SQ P34087
          1. 1y14 picpicxrefxref
            1. region b:1-80 [116324] picpiclink
            2. region d:1-80 [116327] picpiclink
          2. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with bru, mg, tt, zn
            1. region g:1-80 [138199] picpiclink
          3. 2ja7 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with bru, mg, tt, zn
            1. region s:1-80 [138215] picpiclink
          4. 2ja5 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with bru, mg, zn
            1. region g:1-80 [138167] picpiclink
          5. 2ja8 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with bru, mg, tt, zn
            1. region g:1-80 [138231] picpiclink
          6. 2b8k picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with zn
            1. region g:1-80 [128085] picpiclink
          7. 2ja6 picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to d1y14b2
            complexed with bru, mg, tt, zn
            1. region g:1-80 [138183] picpiclink
        3. Human (Homo sapiens) [TaxId: 9606] [142891] (4)
          SQ P62487 1-77
          1. 2c35 picpicxrefxrefxrefxrefxrefxrefxrefxref
            1. region b:1-77 [129713] picpiclink
          2. 2c35 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C35 B:1-77
            1. region d:1-77 [129716] picpiclink
          3. 2c35 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C35 B:1-77
            1. region f:1-77 [129719] picpiclink
          4. 2c35 picpicxrefxrefxrefxrefxrefxrefxrefxref
            automatically matched to 2C35 B:1-77
            1. region h:1-77 [129722] picpiclink
  4. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117778] (1)
    link to SUPERFAMILY database - Superfamily
    1. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117779] (1)
      1. D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain [117780]
        homo-dimerisation domain
        1. Clostridium sticklandii [TaxId: 1511] [117781] (1)
          SQ Q9ZFE5
          1. 1xrs picpicxrefxref
            complexed with 5ad, b12, plp
            1. region b:33-84 [115885] picpiclink
  5. YbjQ-like [117782] (1)
    pentamer, beta/alpha-propeller; additional short beta-strands promote oligomeric assembly
    link to SUPERFAMILY database - Superfamily
    1. YbjQ-like [117783] (2)
      Pfam 01906; DUF 74, UPF0145
      1. Hypothetical protein YbjQ [117784]
        1. Shigella flexneri [TaxId: 623] [117785] (1)
          SQ Q83LS2
          1. 1y2i picpic
            Structural genomics target
            1. chain a [116401] picpiclink
            2. chain b [116402] picpiclink
            3. chain c [116403] picpiclink
            4. chain d [116404] picpiclink
            5. chain e [116405] picpiclink
      2. Hypothetical protein BC1012 [142892]
        1. Bacillus cereus [TaxId: 1396] [142893] (5)
          SQ Q81H14 1-103
          1. 1vr4 picpic
            1. region a:1-103 [120432] picpiclink
          2. 1vr4 picpic
            automatically matched to 1VR4 A:1-103
            1. region b:1-103 [120433] picpiclink
          3. 1vr4 picpic
            automatically matched to 1VR4 A:1-103
            1. region c:1-103 [120434] picpiclink
          4. 1vr4 picpic
            automatically matched to 1VR4 A:1-103
            1. region d:1-103 [120435] picpiclink
          5. 1vr4 picpic
            automatically matched to 1VR4 A:1-103
            1. region e:1-103 [120436] picpiclink
  6. YdgH-like [159871] (1)
    extra N-terminal structures: short strand and short helix; topological similarity to the YbjQ-like superfamily
    1. YdgH-like [159872] (2)
      Pfam 07338; DUF1471
      1. Hypothetical protein STM0082 [159873]
        1. Salmonella typhimurium [TaxId: 90371] [159874] (2)
          SQ Q7CR88 1-96
          1. 2jna picpic
            1. region a:1-96 [148146] picpiclink
          2. 2jna picpic
            automatically matched to 2JNA A:1-96
            1. region b:201-296 [148147] picpiclink
      2. Putative periplasmic protein YahO [159875]
        SCH_0407
        1. Salmonella choleraesuis [TaxId: 28901] [159876] (1)
          SQ Q57SJ8 1-91
          1. 2noc picpic
            1. region a:1-91 [148323] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk