Fold: DCoH-like

beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: DCoH-like [55247]
   beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta

Superfamilies:

1. PCD-like [55248] (1)
   has additional alpha helix at the N-terminus
   uperfamily
   1. PCD-like [55249] (3)
      Pfam 01329
      1. Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) [55250]
         1. Rat (Rattus norvegicus) [TaxId: 10116] [55251] (4)
            1. 1dcp
               complexed with hbi
               1. chain a [39672]
               2. chain b [39673]
               3. chain c [39674]
               4. chain d [39675]
               5. chain e [39676]
               6. chain f [39677]
               7. chain g [39678]
               8. chain h [39679]
            2. 1f93
               1. chain a [39688]
               2. chain b [39689]
               3. chain c [39690]
               4. chain d [39691]
            3. 1dco
               1. chain a [39680]
               2. chain b [39681]
               3. chain c [39682]
               4. chain d [39683]
               5. chain e [39684]
               6. chain f [39685]
               7. chain g [39686]
               8. chain h [39687]
            4. 1dch
               complexed with so4
               1. chain a [39692]
               2. chain b [39693]
               3. chain c [39694]
               4. chain d [39695]
               5. chain e [39696]
               6. chain f [39697]
               7. chain g [39698]
               8. chain h [39699]
         2. Thermus thermophilus [TaxId: 274] [103072] (2)
            1. 1usm
               mutant
               1. chain a [99876]
            2. 1uso
               complexed with so4; mutant
               1. chain a [99877]
               2. chain b [99878]
      2. DcoH-like protein DCoH2 [118018]
         1. Mouse (Mus musculus) [TaxId: 10090] [118019] (1)
            SQ Q9CZL5
            1. 1ru0
               1. chain a [111937]
               2. chain b [111938]
2. C-terminal domain of arginine repressor [55252] (1)
   forms trimers with three closely packed beta-sheets
   uperfamily
   1. C-terminal domain of arginine repressor [55253] (3)
      1. C-terminal domain of arginine repressor [55254]
         1. Escherichia coli [TaxId: 562] [55255] (3)
            1. 1xxa
               complexed with pb
               1. chain a [39700]
               2. chain b [39701]
               3. chain c [39702]
               4. chain d [39703]
               5. chain e [39704]
               6. chain f [39705]
            2. 1xxb
               1. chain a [39706]
               2. chain b [39707]
               3. chain c [39708]
               4. chain d [39709]
               5. chain e [39710]
               6. chain f [39711]
            3. 1xxc
               1. chain a [39712]
               2. chain b [39713]
               3. chain c [39714]
               4. chain d [39715]
               5. chain e [39716]
               6. chain f [39717]
         2. Bacillus stearothermophilus [TaxId: 1422] [55256] (2)
            1. 1b4b
               1. chain a [39718]
               2. chain b [39719]
               3. chain c [39720]
            2. 1b4a
               1. region a:79-149 [39721]
               2. region b:79-149 [39722]
               3. region c:79-149 [39723]
               4. region d:79-149 [39724]
               5. region e:79-149 [39725]
               6. region f:79-149 [39726]
         3. Bacillus subtilis [TaxId: 1423] [69759] (4)
            1. 2p5m
               automatically matched to d1f9na2
               complexed with arg; mutant
               1. region a:79-149 [149254]
            2. 2p5m
               automatically matched to d1f9na2
               complexed with arg; mutant
               1. region b:79-149 [149255]
            3. 2p5m
               automatically matched to d1f9na2
               complexed with arg; mutant
               1. region c:79-149 [149256]
            4. 1f9n
               1. region a:79-149 [64991]
               2. region b:79-149 [64993]
               3. region c:79-149 [64995]
               4. region d:79-149 [64997]
               5. region e:79-149 [64999]
               6. region f:79-149 [65001]
3. RBP11-like subunits of RNA polymerase [55257] (2)
   form homo and heterodimers
   uperfamily
   1. RBP11/RpoL [64311] (2)
      1. RPB11 [64312]
         1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64313] (25)
            SQ P38902; part of multichain biological unit
            1. 1twf
               complexed with mn, utp, zn
               1. chain k [112736]
            2. 1i50
               complexed with mn, zn
               1. chain k [61765]
            3. 1k83
               complexed with ilx, mn, trx, zn
               1. chain k [68286]
            4. 1i3q
               complexed with mg, zn
               1. chain k [61618]
            5. 2nvq
               automatically matched to d1i3qk_
               complexed with dut, mg, zn
               1. region k:1-114 [138645]
            6. 1twc
               complexed with gtp, mn, zn
               1. chain k [112722]
            7. 1twa
               complexed with atp, mn, zn
               1. chain k [112707]
            8. 1i6h
               complexed with mg, zn
               1. chain k [61842]
            9. 1twh
               complexed with atp, mn, zn
               1. chain k [112762]
            10. 1twg
                complexed with ctp, mn, zn
                1. chain k [112749]
            11. 2nvy
                automatically matched to d1i3qk_
                complexed with mn, zn
                1. region k:1-114 [138691]
            12. 2e2i
                automatically matched to d1i3qk_
                complexed with dgt, mg, zn
                1. region k:1-114 [132005]
            13. 2e2j
                automatically matched to d1i3qk_
                complexed with g2p, mg, zn
                1. region k:1-114 [132018]
            14. 2b63
                automatically matched to d1i3qk_
                complexed with 5bu, mg, zn
                1. region k:1-114 [127930]
            15. 2ja7
                automatically matched to d1i3qk_
                complexed with bru, mg, tt, zn
                1. region k:1-114 [138204]
            16. 2ja7
                automatically matched to d1i3qk_
                complexed with bru, mg, tt, zn
                1. region w:1-114 [138220]
            17. 2nvx
                automatically matched to d1i3qk_
                complexed with dut, mg, zn
                1. region k:1-114 [138678]
            18. 2nvt
                automatically matched to d1i3qk_
                complexed with g2p, mg, zn
                1. region k:1-114 [138658]
            19. 2ja5
                automatically matched to d1i3qk_
                complexed with bru, mg, zn
                1. region k:1-114 [138172]
            20. 2ja8
                automatically matched to d1i3qk_
                complexed with bru, mg, tt, zn
                1. region k:1-114 [138236]
            21. 2b8k
                automatically matched to d1i3qk_
                complexed with zn
                1. region k:1-114 [128090]
            22. 2ja6
                automatically matched to d1i3qk_
                complexed with bru, mg, tt, zn
                1. region k:1-114 [138188]
            23. 2yu9
                automatically matched to d1i3qk_
                complexed with mg, utp, zn
                1. region k:1-114 [140075]
            24. 2e2h
                automatically matched to d1i3qk_
                complexed with gtp, mg, zn
                1. region k:1-114 [131992]
            25. 2nvz
                automatically matched to d1i3qk_
                complexed with mg, utp, zn
                1. region k:1-114 [138704]
      2. DNA-directed RNA polymerase subunit L, RpoL [118020]
         1. Thermoplasma acidophilum [TaxId: 2303] [118021] (1)
            SQ Q9HIC5
            1. 1xpp
               Structural genomics target
               complexed with acy, fmt, scn
               1. chain a [115768]
               2. chain b [115769]
               3. chain c [115770]
               4. chain d [115771]
   2. RNA polymerase alpha subunit dimerisation domain [55258] (4)
      1. RNA polymerase alpha [55259]
         1. Escherichia coli [TaxId: 562] [55260] (1)
            1. 1bdf
               mutant
               1. region a:2-52,a:179-232 [39727]
               2. region b:1-52,b:179-235 [39728]
               3. region c:1-52,c:179-235 [39729]
               4. region d:1-52,d:179-235 [39730]
         2. Thermus aquaticus [TaxId: 271] [64314] (7)
            1. 1ynj
               automatically matched to d1i6vb1
               complexed with srn, zn
               1. region a:6-49,a:173-231 [123737]
            2. 1ynj
               automatically matched to d1i6vb1
               complexed with srn, zn
               1. region b:6-49,b:173-228 [123739]
            3. 1i6v
               complexed with mg, rfp, zn
               1. region a:6-49,a:173-229 [61852]
               2. region b:3-49,b:173-232 [61854]
            4. 1ynn
               automatically matched to d1i6vb1
               complexed with rfp, zn
               1. region a:6-49,a:173-231 [123742]
            5. 1ynn
               automatically matched to d1i6vb1
               complexed with rfp, zn
               1. region b:6-49,b:173-228 [123744]
            6. 2gho
               automatically matched to d1i6vb1
               1. region a:6-49,a:173-231 [135180]
            7. 2gho
               automatically matched to d1i6vb1
               1. region b:6-49,b:173-228 [135182]
         3. Thermus thermophilus [TaxId: 274] [75478] (30)
            SQ Q9Z9H6; part of multichain biological unit
            1. 1smy
               complexed with g4p, mg, zn
               1. region a:1-49,a:173-229 [105774]
               2. region b:1-49,b:173-229 [105776]
               3. region k:1-49,k:173-229 [105784]
               4. region l:1-49,l:173-229 [105786]
            2. 2a6h
               automatically matched to d1iw7a1
               complexed with mg, std, zn
               1. region a:1-49,a:173-229 [126260]
            3. 2a6h
               automatically matched to d1iw7a1
               complexed with mg, std, zn
               1. region b:1-49,b:173-229 [126262]
            4. 2a6h
               automatically matched to d1iw7a1
               complexed with mg, std, zn
               1. region k:1-49,k:173-229 [126270]
            5. 2a6h
               automatically matched to d1iw7a1
               complexed with mg, std, zn
               1. region l:1-49,l:173-229 [126272]
            6. 2a69
               automatically matched to d1iw7a1
               complexed with mg, rpt, zn
               1. region a:1-49,a:173-229 [126211]
            7. 2a69
               automatically matched to d1iw7a1
               complexed with mg, rpt, zn
               1. region b:1-49,b:173-229 [126213]
            8. 2a69
               automatically matched to d1iw7a1
               complexed with mg, rpt, zn
               1. region k:1-49,k:173-229 [126221]
            9. 2a69
               automatically matched to d1iw7a1
               complexed with mg, rpt, zn
               1. region l:1-49,l:173-229 [126223]
            10. 2a68
                automatically matched to d1iw7a1
                complexed with mg, rbt, zn
                1. region a:1-49,a:173-229 [126191]
            11. 2a68
                automatically matched to d1iw7a1
                complexed with mg, rbt, zn
                1. region b:1-49,b:173-229 [126193]
            12. 2a68
                automatically matched to d1iw7a1
                complexed with mg, rbt, zn
                1. region k:1-49,k:173-229 [126201]
            13. 2a68
                automatically matched to d1iw7a1
                complexed with mg, rbt, zn
                1. region l:1-49,l:173-229 [126203]
            14. 2be5
                automatically matched to d1iw7a1
                complexed with mg, tgt, zn
                1. region a:1-49,a:173-229 [128351]
            15. 2be5
                automatically matched to d1iw7a1
                complexed with mg, tgt, zn
                1. region b:1-49,b:173-229 [128353]
            16. 2be5
                automatically matched to d1iw7a1
                complexed with mg, tgt, zn
                1. region k:1-49,k:173-229 [128361]
            17. 2be5
                automatically matched to d1iw7a1
                complexed with mg, tgt, zn
                1. region l:1-49,l:173-229 [128363]
            18. 1iw7
                complexed with mg, pb
                1. region a:1-49,a:173-229 [71470]
                2. region b:1-49,b:173-229 [71472]
                3. region k:1-49,k:173-229 [71478]
                4. region l:1-49,l:173-229 [71480]
            19. 2a6e
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region a:1-49,a:173-229 [126240]
            20. 2a6e
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region b:1-49,b:173-229 [126242]
            21. 2a6e
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region k:1-49,k:173-229 [126250]
            22. 2a6e
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region l:1-49,l:173-229 [126252]
            23. 1zyr
                automatically matched to d1iw7a1
                complexed with mg, std, zn
                1. region a:1-49,a:173-229 [125849]
            24. 1zyr
                automatically matched to d1iw7a1
                complexed with mg, std, zn
                1. region b:1-49,b:173-229 [125851]
            25. 1zyr
                automatically matched to d1iw7a1
                complexed with mg, std, zn
                1. region k:1-49,k:173-229 [125859]
            26. 1zyr
                automatically matched to d1iw7a1
                complexed with mg, std, zn
                1. region l:1-49,l:173-229 [125861]
            27. 2cw0
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region a:1-49,a:173-229 [130898]
            28. 2cw0
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region b:1-49,b:173-229 [130900]
            29. 2cw0
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region k:1-49,k:173-229 [130908]
            30. 2cw0
                automatically matched to d1iw7a1
                complexed with mg, zn
                1. region l:1-49,l:173-229 [130910]
      2. RPB3 [64315]
         1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64316] (25)
            SQ P16370; part of multichain biological unit
            1. 1twf
               complexed with mn, utp, zn
               1. region c:3-41,c:173-268 [112727]
            2. 1i50
               complexed with mn, zn
               1. region c:3-41,c:173-268 [61756]
            3. 1k83
               complexed with ilx, mn, trx, zn
               1. region c:3-41,c:173-268 [68277]
            4. 1i3q
               complexed with mg, zn
               1. region c:3-41,c:173-268 [61609]
            5. 2nvq
               automatically matched to d1i3qc1
               complexed with dut, mg, zn
               1. region c:3-37,c:173-268 [138636]
            6. 1twc
               complexed with gtp, mn, zn
               1. region c:3-41,c:173-268 [112713]
            7. 1twa
               complexed with atp, mn, zn
               1. region c:3-41,c:173-268 [112698]
            8. 1i6h
               complexed with mg, zn
               1. region c:3-41,c:173-268 [61833]
            9. 1twh
               complexed with atp, mn, zn
               1. region c:3-41,c:173-268 [112753]
            10. 1twg
                complexed with ctp, mn, zn
                1. region c:3-41,c:173-268 [112740]
            11. 2nvy
                automatically matched to d1i3qc1
                complexed with mn, zn
                1. region c:3-37,c:173-268 [138682]
            12. 2e2i
                automatically matched to d1i3qc1
                complexed with dgt, mg, zn
                1. region c:3-37,c:173-268 [131996]
            13. 2e2j
                automatically matched to d1i3qc1
                complexed with g2p, mg, zn
                1. region c:3-37,c:173-268 [132009]
            14. 2b63
                automatically matched to d1i3qc1
                complexed with 5bu, mg, zn
                1. region c:3-37,c:173-268 [127919]
            15. 2ja7
                automatically matched to d1i3qc1
                complexed with bru, mg, tt, zn
                1. region c:3-37,c:173-268 [138192]
            16. 2ja7
                automatically matched to d1i3qc1
                complexed with bru, mg, tt, zn
                1. region o:3-37,o:173-268 [138208]
            17. 2nvx
                automatically matched to d1i3qc1
                complexed with dut, mg, zn
                1. region c:3-37,c:173-268 [138669]
            18. 2nvt
                automatically matched to d1i3qc1
                complexed with g2p, mg, zn
                1. region c:3-37,c:173-268 [138649]
            19. 2ja5
                automatically matched to d1i3qc1
                complexed with bru, mg, zn
                1. region c:3-37,c:173-268 [138160]
            20. 2ja8
                automatically matched to d1i3qc1
                complexed with bru, mg, tt, zn
                1. region c:3-37,c:173-268 [138224]
            21. 2b8k
                automatically matched to d1i3qc1
                complexed with zn
                1. region c:3-37,c:173-268 [128078]
            22. 2ja6
                automatically matched to d1i3qc1
                complexed with bru, mg, tt, zn
                1. region c:3-37,c:173-268 [138176]
            23. 2yu9
                automatically matched to d1i3qc1
                complexed with mg, utp, zn
                1. region c:3-37,c:173-268 [140066]
            24. 2e2h
                automatically matched to d1i3qc1
                complexed with gtp, mg, zn
                1. region c:3-37,c:173-268 [131983]
            25. 2nvz
                automatically matched to d1i3qc1
                complexed with mg, utp, zn
                1. region c:3-37,c:173-268 [138695]
4. GAD domain-like [55261] (2)
   uperfamily
   1. GAD domain [55262] (4)
      has additional structures inserted in the common fold loops
      1. Prokaryotic AspRS, insert domain [55263]
         1. Escherichia coli [TaxId: 562] [55264] (3)
            1. 1c0a
               1. region a:288-420 [39731]
            2. 1il2
               complexed with 1mg, 5mc, 5mu, amo, h2u, psu, so4
               1. region a:288-420 [66194]
               2. region b:1288-1420 [66197]
            3. 1eqr
               complexed with mg
               1. region a:288-420 [39732]
               2. region b:288-420 [39733]
               3. region c:288-420 [39734]
         2. Thermus thermophilus, AspRS-1 [TaxId: 274] [55265] (3)
            1. 1l0w
               1. region a:295-414 [73427]
               2. region b:1295-1414 [73430]
            2. 1g51
               complexed with amo, amp, so4
               1. region a:295-414 [39735]
               2. region b:1295-1414 [39736]
            3. 1efw
               protein/RNA complex; complexed with 2ma, 4su, 5mu, g7m, h2u, psu, quo
               1. region a:295-414 [39737]
               2. region b:295-414 [39738]
      2. Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain [143513]
         1. Methanobacterium thermoautotrophicum [TaxId: 145262] [143514] (2)
            SQ O26803 271-395
            1. 2d6f
               complexed with zn
               1. region c:271-395 [131308]
            2. 2d6f
               automatically matched to 2D6F C:271-395
               complexed with zn
               1. region d:271-395 [131311]
         2. Pyrococcus abyssi [TaxId: 29292] [143515] (2)
            SQ Q9V0U0 277-407
            1. 1zq1
               complexed with asp
               1. region c:277-407 [125494]
            2. 1zq1
               automatically matched to 1ZQ1 C:277-407
               complexed with asp
               1. region d:277-407 [125497]
   2. PH0730 C-terminal domain-like [160464] (1)
      1. Hypothetical protein PH0730 [160465]
         1. Pyrococcus horikoshii [TaxId: 53953] [160466] (1)
            SQ O58461 97-213
            1. 2p8t
               mutant
               1. region a:83-199 [149316]
5. PH0987 N-terminal domain-like [160467] (1)
   1. PH0987 N-terminal domain-like [160468] (1)
      corresponds to the N-terminal part of Pfam 02682; Allophanate hydrolase subunit 1 (AHS1)
      1. Uncharacterized protein PH0987 [160469]
         1. Pyrococcus horikoshii [TaxId: 53953] [160470] (1)
            SQ O58715 2-85
            1. 2phc
               1. region b:2-85 [149467]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk