Structural Classification of Proteins
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Superfamily: GAD domain-like

link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: DCoH-like [55247]
    beta(2)-alpha-beta(2)-alpha; 2 layers, alpha/beta
  4. Superfamily: GAD domain-like [55261]
    link to SUPERFAMILY database - Superfamily

Families:

  1. GAD domain [55262] (4)
    has additional structures inserted in the common fold loops
    1. Prokaryotic AspRS, insert domain [55263]
      1. Escherichia coli [TaxId: 562] [55264] (3)
        1. 1c0a picpicxrefxref
          1. region a:288-420 [39731] picpiclink
        2. 1il2 picpicxrefxref
          complexed with 1mg, 5mc, 5mu, amo, h2u, psu, so4
          1. region a:288-420 [66194] picpiclink
          2. region b:1288-1420 [66197] picpiclink
        3. 1eqr picpicxrefxref
          complexed with mg
          1. region a:288-420 [39732] picpiclink
          2. region b:288-420 [39733] picpiclink
          3. region c:288-420 [39734] picpiclink
      2. Thermus thermophilus, AspRS-1 [TaxId: 274] [55265] (3)
        1. 1l0w picpicxrefxref
          1. region a:295-414 [73427] picpiclink
          2. region b:1295-1414 [73430] picpiclink
        2. 1g51 picpicxrefxref
          complexed with amo, amp, so4
          1. region a:295-414 [39735] picpiclink
          2. region b:1295-1414 [39736] picpiclink
        3. 1efw picpicxrefxref
          protein/RNA complex; complexed with 2ma, 4su, 5mu, g7m, h2u, psu, quo
          1. region a:295-414 [39737] picpiclink
          2. region b:295-414 [39738] picpiclink
    2. Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain [143513]
      1. Methanobacterium thermoautotrophicum [TaxId: 145262] [143514] (2)
        SQ O26803 271-395
        1. 2d6f picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with zn
          1. region c:271-395 [131308] picpiclink
        2. 2d6f picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 2D6F C:271-395
          complexed with zn
          1. region d:271-395 [131311] picpiclink
      2. Pyrococcus abyssi [TaxId: 29292] [143515] (2)
        SQ Q9V0U0 277-407
        1. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
          complexed with asp
          1. region c:277-407 [125494] picpiclink
        2. 1zq1 picpicxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 1ZQ1 C:277-407
          complexed with asp
          1. region d:277-407 [125497] picpiclink
  2. PH0730 C-terminal domain-like [160464] (1)
    1. Hypothetical protein PH0730 [160465]
      1. Pyrococcus horikoshii [TaxId: 53953] [160466] (1)
        SQ O58461 97-213
        1. 2p8t picpicxref
          mutant
          1. region a:83-199 [149316] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk