Structural Classification of Proteins
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Protein: VMA1-derived endonuclease (VDE) PI-SceI from Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

SQ P17255 284-737

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Homing endonuclease-like [55603]
    alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243
  4. Superfamily: Homing endonucleases [55608]
    link to SUPERFAMILY database - Superfamily
  5. Family: Intein endonuclease [55614]
    duplication: contains tandem repeat of this fold
  6. Protein: VMA1-derived endonuclease (VDE) PI-SceI [55615]
    homing endonuclease with protein splicing activity
  7. Species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55616]
    SQ P17255 284-737

PDB Entry Domains:

  1. 1jva picpicxref
    mutant
    1. region a:464-581 [77176] picpiclink
    2. region a:582-698 [77177] picpiclink
    3. region b:464-581 [77179] picpiclink
    4. region b:582-698 [77180] picpiclink
  2. 1ef0 picpicxref
    complexed with zn
    1. region a:181-298 [40577] picpiclink
    2. region a:299-415 [40578] picpiclink
    3. region b:181-298 [40579] picpiclink
    4. region b:299-415 [40580] picpiclink
  3. 1dfa picpicxref
    1. region a:181-298 [40575] picpiclink
    2. region a:299-415 [40576] picpiclink
  4. 1vde picpicxref
    1. region a:181-298 [40581] picpiclink
    2. region a:299-415 [40582] picpiclink
    3. region b:181-298 [40583] picpiclink
    4. region b:299-415 [40584] picpiclink
  5. 1um2 picpicxref
    mutant
    1. region a:464-581 [107947] picpiclink
    2. region a:582-698 [107948] picpiclink
    3. region b:464-581 [107950] picpiclink
    4. region b:582-698 [107951] picpiclink
  6. 1lwt picpicxref
    complexed with mse
    1. region a:181-298 [78279] picpiclink
    2. region a:299-415 [78280] picpiclink
  7. 1lws picpicxref
    complexed with ca, mse
    1. region a:181-298 [78276] picpiclink
    2. region a:299-415 [78277] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk