Structural Classification of Proteins
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Superfamily: GAF domain-like

alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily: GAF domain-like [55781]
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
    link to SUPERFAMILY database - Superfamily

Families:

  1. GAF domain [55782] (8)
    1. Hypothetical protein ykl069wp [55783]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55784] (1)
        1. 1f5m picpic
          structural genomics
          complexed with br
          1. chain a [40895] picpiclink
          2. chain b [40896] picpiclink
    2. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760]
      GAF B is the nucleotide binding domain; the two domains are connected with a long helix;
      1. Mouse (Mus musculus) [TaxId: 10090] [82761] (1)
        1. 1mc0 picpic
          complexed with pcg; mutant
          1. region a:215-401 [78937] picpiclink
          2. region a:402-555 [78938] picpiclink
    3. Hypothetical protein YebR [103182]
      1. Escherichia coli [TaxId: 562] [103183] (1)
        1. 1vhm picpic
          structural genomics
          complexed with mes
          1. chain a [100691] picpiclink
          2. chain b [100692] picpiclink
    4. Sensor protein PhyB2 [160655]
      1. Rhodopseudomonas palustris [TaxId: 1076] [160656] (2)
        SQ Q6N5G2 140-333
        1. 2ool picpicxrefxref
          complexed with lbv
          1. region a:140-333 [148932] picpiclink
        2. 2ool picpicxrefxref
          automatically matched to 2OOL A:140-333
          complexed with lbv
          1. region b:143-332 [148934] picpiclink
    5. Phytochrome-like protein Cph1 [160657]
      1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160658] (1)
        SQ Q55168 131-326
        1. 2vea picpicxrefxref
          complexed with cyc
          1. region a:131-326 [153022] picpiclink
    6. Sensor protein CYB2465 [160659]
      1. Synechococcus sp. [TaxId: 1131] [160660] (1)
        SQ Q2JIZ5 31-200
        1. 2k2n picpic
          complexed with cyc
          1. region a:31-200 [148261] picpiclink
    7. Bacteriophytochrome BphP [160661]
      1. Pseudomonas aeruginosa [TaxId: 287] [160662] (8)
        SQ Q9HWR3 118-309
        1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with bla
          1. region a:118-309 [155887] picpiclink
        2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region b:118-309 [155890] picpiclink
        3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region c:118-309 [155893] picpiclink
        4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region d:118-309 [155896] picpiclink
        5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region e:118-309 [155899] picpiclink
        6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region f:118-309 [155902] picpiclink
        7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region g:118-309 [155905] picpiclink
        8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:118-309
          complexed with bla
          1. region h:118-309 [155908] picpiclink
      2. Deinococcus radiodurans [TaxId: 1299] [160663] (3)
        SQ Q9RZA4 135-321! SQ Q9RZA4 137-325
        1. 2o9c picpicxref
          automatically matched to 2O9B A:135-321
          complexed with lbv; mutant
          1. region a:135-321 [148684] picpiclink
        2. 2o9b picpicxref
          complexed with lbv; mutant
          1. region a:135-321 [148682] picpiclink
        3. 1ztu picpicxref
          complexed with bla; mutant
          1. region a:137-325 [146024] picpiclink
  2. IclR ligand-binding domain-like [75513] (3)
    Pfam 01614
    1. Transcriptional regulator IclR, C-terminal domain [75514]
      1. Thermotoga maritima [TaxId: 2336] [75515] (1)
        1. 1mkm picpicxref
          complexed with fmt, zn
          1. region a:76-246 [79243] picpiclink
          2. region b:76-246 [79245] picpiclink
      2. Escherichia coli [TaxId: 562] [111112] (9)
        SQ P16528 98-272
        1. 2o9a picpic
          automatically matched to d1td5d_
          complexed with edo, pyr
          1. region a:1-180 [138956] picpiclink
        2. 2o9a picpic
          automatically matched to d1td5d_
          complexed with edo, pyr
          1. region b:1-179 [138957] picpiclink
        3. 2o9a picpic
          automatically matched to d1td5d_
          complexed with edo, pyr
          1. region c:1-180 [138958] picpiclink
        4. 2o9a picpic
          automatically matched to d1td5d_
          complexed with edo, pyr
          1. region d:1-180 [138959] picpiclink
        5. 2o99 picpic
          automatically matched to d1td5d_
          complexed with edo, goa
          1. region a:1-180 [138952] picpiclink
        6. 2o99 picpic
          automatically matched to d1td5d_
          complexed with edo, goa
          1. region b:1-179 [138953] picpiclink
        7. 2o99 picpic
          automatically matched to d1td5d_
          complexed with edo, goa
          1. region c:1-180 [138954] picpiclink
        8. 2o99 picpic
          automatically matched to d1td5d_
          complexed with edo, goa
          1. region d:3-180 [138955] picpiclink
        9. 1td5 picpic
          Structural genomics target
          1. chain a [106767] picpiclink
          2. chain b [106768] picpiclink
          3. chain c [106769] picpiclink
          4. chain d [106770] picpiclink
    2. Transcriptional regulator AllR, C-terminal domain [111113]
      1. Escherichia coli [TaxId: 562] [111114] (1)
        SQ P77734 97-269
        1. 1tf1 picpic
          Structural genomics target
          1. chain a [106826] picpiclink
          2. chain b [106827] picpiclink
          3. chain c [106828] picpiclink
          4. chain d [106829] picpiclink
  3. HrcA C-terminal domain-like [111115] (1)
    Pfam 01628; contains insert domain (140-229) of the Enolase N-terminal domain-like fold (scop_cf 54825)
    1. Heat-inducible transcription repressor HrcA, C-terminal domain [111116]
      1. Thermotoga maritima [TaxId: 2336] [111117] (1)
        SQ Q9WZV5
        1. 1stz picpicxref
          Structural genomics target
          1. region a:101-336 [106010] picpiclink
          2. region b:111-336 [106012] picpiclink
          3. region c:111-336 [106014] picpiclink
  4. Phytochrome-specific domain [160664] (2)
    Pfam 00360
    1. Bacteriophytochrome BphP [160665]
      1. Pseudomonas aeruginosa [TaxId: 287] [160666] (8)
        SQ Q9HWR3 310-494
        1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          complexed with bla
          1. region a:310-494 [155888] picpiclink
        2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region b:310-494 [155891] picpiclink
        3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region c:310-494 [155894] picpiclink
        4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region d:310-494 [155897] picpiclink
        5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region e:310-494 [155900] picpiclink
        6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region f:310-494 [155903] picpiclink
        7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region g:310-494 [155906] picpiclink
        8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
          automatically matched to 3C2W A:310-494
          complexed with bla
          1. region h:310-494 [155909] picpiclink
    2. Phytochrome-like protein Cph1 [160667]
      1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160668] (1)
        SQ Q55168 327-514
        1. 2vea picpicxrefxref
          complexed with cyc
          1. region a:327-514 [153023] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk