Structural Classification of Proteins
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Family: GAF domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily: GAF domain-like [55781]
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
    link to SUPERFAMILY database - Superfamily
  5. Family: GAF domain [55782]

Protein Domains:

  1. Hypothetical protein ykl069wp [55783]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55784] (1) picpic
  2. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760]
    GAF B is the nucleotide binding domain; the two domains are connected with a long helix;
    1. Mouse (Mus musculus) [TaxId: 10090] [82761] (1) picpic
  3. Hypothetical protein YebR [103182]
    1. Escherichia coli [TaxId: 562] [103183] (1) picpic
  4. Sensor protein PhyB2 [160655]
    1. Rhodopseudomonas palustris [TaxId: 1076] [160656] (2) picpic
      SQ Q6N5G2 140-333
  5. Phytochrome-like protein Cph1 [160657]
    1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160658] (1) picpic
      SQ Q55168 131-326
  6. Sensor protein CYB2465 [160659]
    1. Synechococcus sp. [TaxId: 1131] [160660] (1) picpic
      SQ Q2JIZ5 31-200
  7. Bacteriophytochrome BphP [160661]
    1. Pseudomonas aeruginosa [TaxId: 287] [160662] (8) picpic
      SQ Q9HWR3 118-309
    2. Deinococcus radiodurans [TaxId: 1299] [160663] (3) picpic
      SQ Q9RZA4 135-321! SQ Q9RZA4 137-325
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk