Structural Classification of Proteins

Superfamily: GAF domain-like

: alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Profilin-like [55769]
core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
Superfamily: GAF domain-like [55781]
alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
uperfamily

Families:

GAF domain [55782] (8)
1. Hypothetical protein ykl069wp [55783]
  1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55784] (1)
2. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760]
  GAF B is the nucleotide binding domain; the two domains are connected with a long helix;
  1. Mouse (Mus musculus) [TaxId: 10090] [82761] (1)
3. Hypothetical protein YebR [103182]
  1. Escherichia coli [TaxId: 562] [103183] (1)
4. Sensor protein PhyB2 [160655]
  1. Rhodopseudomonas palustris [TaxId: 1076] [160656] (2)
    SQ Q6N5G2 140-333
5. Phytochrome-like protein Cph1 [160657]
  1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160658] (1)
    SQ Q55168 131-326
6. Sensor protein CYB2465 [160659]
  1. Synechococcus sp. [TaxId: 1131] [160660] (1)
    SQ Q2JIZ5 31-200
7. Bacteriophytochrome BphP [160661]
  1. Pseudomonas aeruginosa [TaxId: 287] [160662] (8)
    SQ Q9HWR3 118-309
  2. Deinococcus radiodurans [TaxId: 1299] [160663] (3)
    SQ Q9RZA4 135-321! SQ Q9RZA4 137-325
IclR ligand-binding domain-like [75513] (3)
Pfam 01614
1. Transcriptional regulator IclR, C-terminal domain [75514]
  1. Thermotoga maritima [TaxId: 2336] [75515] (1)
  2. Escherichia coli [TaxId: 562] [111112] (9)
    SQ P16528 98-272
2. Transcriptional regulator AllR, C-terminal domain [111113]
  1. Escherichia coli [TaxId: 562] [111114] (1)
    SQ P77734 97-269
HrcA C-terminal domain-like [111115] (1)
Pfam 01628; contains insert domain (140-229) of the Enolase N-terminal domain-like fold (scop_cf 54825)
1. Heat-inducible transcription repressor HrcA, C-terminal domain [111116]
  1. Thermotoga maritima [TaxId: 2336] [111117] (1)
    SQ Q9WZV5
Phytochrome-specific domain [160664] (2)
Pfam 00360
1. Bacteriophytochrome BphP [160665]
  1. Pseudomonas aeruginosa [TaxId: 287] [160666] (8)
    SQ Q9HWR3 310-494
2. Phytochrome-like protein Cph1 [160667]
  1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160668] (1)
    SQ Q55168 327-514