Structural Classification of Proteins
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Family: GAF domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily: GAF domain-like [55781]
    alpha(2)-beta(3)-alpha-beta(3)-alpha; antiparallel beta-sheet: order 321654
    link to SUPERFAMILY database - Superfamily
  5. Family: GAF domain [55782]

Protein Domains:

  1. Hypothetical protein ykl069wp [55783]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [55784] (1)
      1. 1f5m picpic
        structural genomics
        complexed with br
        1. chain a [40895] picpiclink
        2. chain b [40896] picpiclink
  2. 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains [82760]
    GAF B is the nucleotide binding domain; the two domains are connected with a long helix;
    1. Mouse (Mus musculus) [TaxId: 10090] [82761] (1)
      1. 1mc0 picpic
        complexed with pcg; mutant
        1. region a:215-401 [78937] picpiclink
        2. region a:402-555 [78938] picpiclink
  3. Hypothetical protein YebR [103182]
    1. Escherichia coli [TaxId: 562] [103183] (1)
      1. 1vhm picpic
        structural genomics
        complexed with mes
        1. chain a [100691] picpiclink
        2. chain b [100692] picpiclink
  4. Sensor protein PhyB2 [160655]
    1. Rhodopseudomonas palustris [TaxId: 1076] [160656] (2)
      SQ Q6N5G2 140-333
      1. 2ool picpicxrefxref
        complexed with lbv
        1. region a:140-333 [148932] picpiclink
      2. 2ool picpicxrefxref
        automatically matched to 2OOL A:140-333
        complexed with lbv
        1. region b:143-332 [148934] picpiclink
  5. Phytochrome-like protein Cph1 [160657]
    1. Synechocystis sp. pcc 6803 [TaxId: 1148] [160658] (1)
      SQ Q55168 131-326
      1. 2vea picpicxrefxref
        complexed with cyc
        1. region a:131-326 [153022] picpiclink
  6. Sensor protein CYB2465 [160659]
    1. Synechococcus sp. [TaxId: 1131] [160660] (1)
      SQ Q2JIZ5 31-200
      1. 2k2n picpic
        complexed with cyc
        1. region a:31-200 [148261] picpiclink
  7. Bacteriophytochrome BphP [160661]
    1. Pseudomonas aeruginosa [TaxId: 287] [160662] (8)
      SQ Q9HWR3 118-309
      1. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        complexed with bla
        1. region a:118-309 [155887] picpiclink
      2. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region b:118-309 [155890] picpiclink
      3. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region c:118-309 [155893] picpiclink
      4. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region d:118-309 [155896] picpiclink
      5. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region e:118-309 [155899] picpiclink
      6. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region f:118-309 [155902] picpiclink
      7. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region g:118-309 [155905] picpiclink
      8. 3c2w picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
        automatically matched to 3C2W A:118-309
        complexed with bla
        1. region h:118-309 [155908] picpiclink
    2. Deinococcus radiodurans [TaxId: 1299] [160663] (3)
      SQ Q9RZA4 135-321! SQ Q9RZA4 137-325
      1. 2o9c picpicxref
        automatically matched to 2O9B A:135-321
        complexed with lbv; mutant
        1. region a:135-321 [148684] picpiclink
      2. 2o9b picpicxref
        complexed with lbv; mutant
        1. region a:135-321 [148682] picpiclink
      3. 1ztu picpicxref
        complexed with bla; mutant
        1. region a:137-325 [146024] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk