Structural Classification of Proteins
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Protein: Photoactive yellow protein, PYP from Ectothiorhodospira halophila [TaxId: 1053]

SQ P16113

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Profilin-like [55769]
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. Superfamily: PYP-like sensor domain (PAS domain) [55785]
    alpha-beta(2)-alpha(2)-beta(3)
    link to SUPERFAMILY database - Superfamily
  5. Family: PYP-like [55786]
  6. Protein: Photoactive yellow protein, PYP [55787]
  7. Species: Ectothiorhodospira halophila [TaxId: 1053] [55788]
    SQ P16113

PDB Entry Domains:

  1. 1nwz picpic
    ultra-high resolution structure
    complexed with hc4
    1. chain a [86370] picpiclink
  2. 3pyp picpic
    cryotrapped early light cycle intermediate
    complexed with hc4
    1. chain a [40897] picpiclink
  3. 1ot6 picpic
    complexed with hc4; mutant
    1. chain a [93504] picpiclink
  4. 1ot9 picpic
    complexed with hc4
    1. chain a [93510] picpiclink
  5. 2qj7 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:3-125 [150822] picpiclink
  6. 1otb picpic
    complexed with hc4
    1. chain a [93512] picpiclink
  7. 1f9i picpic
    complexed with hc4; mutant
    1. chain a [40898] picpiclink
  8. 1ota picpic
    complexed with hc4; mutant
    1. chain a [93511] picpiclink
  9. 1f98 picpic
    complexed with hc4; mutant
    1. chain a [40899] picpiclink
  10. 1uwn picpic
    complexed with hc4, so4
    1. chain x [100127] picpiclink
  11. 1uwp picpic
    automatically matched to d1nwza_
    complexed with hc4, so4
    1. region x:1-125 [119764] picpiclink
  12. 1kou picpic
    complexed with but, dhc
    1. chain a [72832] picpiclink
  13. 1ugu picpic
    complexed with hc4; mutant
    1. chain a [107839] picpiclink
  14. 2qj5 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:3-125 [150821] picpiclink
  15. 1otd picpic
    complexed with hc4
    1. chain a [93513] picpiclink
    2. chain b [93514] picpiclink
  16. 1d7e picpic
    the p65 crystal form
    complexed with hc4
    1. chain a [40900] picpiclink
  17. 2d01 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:2-125 [131059] picpiclink
  18. 1oti picpic
    complexed with hc4; mutant
    1. chain a [93516] picpiclink
  19. 1s1z picpic
    complexed with hc4; mutant
    1. chain a [105221] picpiclink
  20. 1s1y picpic
    complexed with hc4; mutant
    1. chain a [105220] picpiclink
  21. 1ote picpic
    complexed with hc4; mutant
    1. chain a [93515] picpiclink
  22. 2phy picpic
    complexed with hc4
    1. chain a [40901] picpiclink
  23. 1ts0 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:1-125 [119330] picpiclink
  24. 1t1c picpic
    automatically matched to d1ot6a_
    complexed with hc4; mutant
    1. region a:1-125 [119106] picpiclink
  25. 1ts6 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:1-125 [119331] picpiclink
  26. 1t19 picpic
    automatically matched to d1ot6a_
    complexed with hc4; mutant
    1. region a:1-125 [119103] picpiclink
  27. 1gsv picpic
    complexed with hc4; mutant
    1. chain a [65537] picpiclink
  28. 1t18 picpic
    automatically matched to d1ot6a_
    complexed with hc4; mutant
    1. region a:1-125 [119102] picpiclink
  29. 1gsx picpic
    complexed with hc4; mutant
    1. chain a [65539] picpiclink
  30. 1gsw picpic
    complexed with hc4; mutant
    1. chain a [65538] picpiclink
  31. 2pyp picpic
    photostationary state: 50% ground state, 50% bleached
    complexed with hc4
    1. chain a [40902] picpiclink
  32. 1t1a picpic
    automatically matched to d1ot6a_
    complexed with hc4; mutant
    1. region a:1-125 [119104] picpiclink
  33. 1t1b picpic
    automatically matched to d1ot6a_
    complexed with hc4; mutant
    1. region a:1-125 [119105] picpiclink
  34. 1s4r picpic
    complexed with hc4
    1. chain a [98508] picpiclink
  35. 2pyr picpic
    complexed with hc4
    1. chain a [40903] picpiclink
  36. 1s4s picpic
    complexed with hc4
    1. chain a [98509] picpiclink
  37. 1ts8 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:1-125 [119333] picpiclink
  38. 1ts7 picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:1-125 [119332] picpiclink
  39. 2qws picpic
    automatically matched to d1nwza_
    complexed with hc4
    1. region a:3-125 [151438] picpiclink
  40. 1xfn picpic
    automatically matched to d1odva_
    complexed with hc4
    1. region a:26-125 [121934] picpiclink
  41. 1xfq picpic
    automatically matched to d1odva_
    complexed with hc4
    1. region a:26-125 [121935] picpiclink
  42. 3phy picpic
    dark state (unbleached)
    complexed with hc4
    1. chain a [40904] picpiclink
  43. 1odv picpic
    1-25 deletion mutant
    1. chain a [86887] picpiclink
    2. chain b [86888] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk