Structural Classification of Proteins

Fold: Peptide deformylase

: alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Peptide deformylase [56419]
alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

Superfamilies:

Peptide deformylase [56420] (1)
nickel-dependent enzyme
uperfamily
1. Peptide deformylase [56421] (9)
  1. Peptide deformylase [56422]
    1. Escherichia coli [TaxId: 562] [56423] (21)
      1. 1xeo
        automatically matched to d1bs4a_
        complexed with co, fmt
        
        region a:1-164 [121913]
      2. 1xem
        automatically matched to d1bs4a_
        complexed with fmt, zn
        
        region a:1-164 [121911]
      3. 2ai8
        automatically matched to d1bs4a_
        complexed with ni, sb7
        
        region a:1-164 [126819]
      4. 2ai8
        automatically matched to d1bs4a_
        complexed with ni, sb7
        
        region b:1-164 [126820]
      5. 2ai8
        automatically matched to d1bs4a_
        complexed with ni, sb7
        
        region c:1-164 [126821]
      6. 1g2a
        complexed with bb2, ni
        
        chain a [65109]
        chain b [65110]
        chain c [65111]
      7. 1xen
        automatically matched to d1bs4a_
        complexed with fe, fmt
        
        region a:1-164 [121912]
      8. 1bs4
        complexed with 2pe, so4, zn3
        
        chain a [42287]
        chain b [42288]
        chain c [42289]
      9. 1icj
        complexed with ni, pgo, so4
        
        chain a [42284]
        chain b [42285]
        chain c [42286]
      10. 1bsz
        complexed with 2pe, of1, so4
        
        chain a [42281]
        chain b [42282]
        chain c [42283]
      11. 1bs6
        complexed with ni1, ni2, so4
        
        chain a [42290]
        chain b [42291]
        chain c [42292]
      12. 1bs8
        complexed with so4, zn3, zno
        
        chain a [42293]
        chain b [42294]
        chain c [42295]
      13. 1lru
        complexed with antibiotic actinonin
        complexed with bb2, so4, zn
        
        chain a [74228]
        chain b [74229]
        chain c [74230]
      14. 1g27
        complexed with bb1, ni
        
        chain a [65106]
        chain b [65107]
        chain c [65108]
      15. 1bs7
        complexed with ni1, so4
        
        chain a [42299]
        chain b [42300]
        chain c [42301]
      16. 1bs5
        complexed with so4, zn3
        
        chain a [42296]
        chain b [42297]
        chain c [42298]
      17. 1bsj
        complexed with co, mln, po4
        
        chain a [42302]
      18. 1bsk
        complexed with mln, po4, zn
        
        chain a [42303]
      19. 1dff
        complexed with zn
        
        chain a [42304]
      20. 2def
        complexed with ni; mutant
        
        chain a [42305]
      21. 1def
        incorrect model(?)
        complexed with zn
        
        chain a [42306]
    2. Pseudomonas aeruginosa [TaxId: 287] [75578] (4)
      1. 1ix1
        complexed with antibiotic actinonin
        complexed with bb2, mha, zn
        
        chain a [90712]
        chain b [90713]
      2. 1n5n
        complexed with gol, zn; mutant
        
        chain a [85336]
        chain b [85337]
      3. 1s17
        complexed with gnr, gol, ni
        
        chain a [98335]
        chain b [98336]
      4. 1lry
        complexed with antibiotic actinonin
        complexed with bb2, zn
        
        chain a [74231]
    3. Leptospira interrogans [TaxId: 173] [103340] (1)
      SQ Q72S74
      1. 1y6h
        complexed with cbx, gly, zn
        
        chain a [116505]
        chain b [116506]
    4. Staphylococcus aureus [TaxId: 1280] [75579] (6)
      SQ Q9F4L4
      1. 1lm4
        complexed with csw, fe, gol
        
        chain a [84626]
        chain b [84627]
      2. 1lmh
        complexed with mse, zn; mutant
        
        chain a [74036]
      3. 1q1y
        complexed with bb2, zn
        
        chain a [104480]
      4. 1lqw
        complexed with zn
        
        chain a [74210]
        chain b [74211]
      5. 2ai9
        automatically matched to d1lm4a_
        complexed with ni, so4
        
        region a:0-182 [126822]
      6. 2ai9
        automatically matched to d1lm4a_
        complexed with ni, so4
        
        region b:0-182 [126823]
    5. Streptococcus pneumoniae [TaxId: 1313] [90057] (1)
      1. 1lm6
        complexed with csw, fe, gol
        
        chain a [84628]
    6. Thermotoga maritima [TaxId: 2336] [90058] (1)
      1. 1lme
        complexed with ocs
        
        chain a [84629]
        chain b [84630]
    7. Bacillus stearothermophilus [TaxId: 1422] [75580] (1)
      1. 1lqy
        complexed with antibiotic actinonin
        complexed with bb2, ni
        
        chain a [74212]
    8. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [75581] (3)
      1. 1rl4
        complexed with bl5, brr, co
        
        chain a [97636]
        chain b [97637]
      2. 1rqc
        complexed with co
        
        chain a [97732]
        chain b [97733]
        chain c [97734]
        chain d [97735]
        chain e [97736]
        chain f [97737]
        chain g [97738]
        chain h [97739]
        chain i [97740]
        chain j [97741]
      3. 1jym
        complexed with mse, ocl
        
        chain a [71957]
        chain b [71958]
        chain c [71959]
        chain d [71960]
        chain e [71961]
        chain f [71962]
        chain g [71963]
        chain h [71964]
        chain i [71965]
        chain j [71966]
    9. Thermus thermophilus [TaxId: 274] [118165] (1)
      SQ P43522
      1. 1v3y
        
        chain a [113508]
        chain b [113509]