Structural Classification of Proteins
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Protein: Peptide deformylase from Escherichia coli [TaxId: 562]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Peptide deformylase [56419]
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. Superfamily: Peptide deformylase [56420]
    nickel-dependent enzyme
    link to SUPERFAMILY database - Superfamily
  5. Family: Peptide deformylase [56421]
  6. Protein: Peptide deformylase [56422]
  7. Species: Escherichia coli [TaxId: 562] [56423]

PDB Entry Domains:

  1. 1xeo picpic
    automatically matched to d1bs4a_
    complexed with co, fmt
    1. region a:1-164 [121913] picpiclink
  2. 1xem picpic
    automatically matched to d1bs4a_
    complexed with fmt, zn
    1. region a:1-164 [121911] picpiclink
  3. 2ai8 picpic
    automatically matched to d1bs4a_
    complexed with ni, sb7
    1. region a:1-164 [126819] picpiclink
  4. 2ai8 picpic
    automatically matched to d1bs4a_
    complexed with ni, sb7
    1. region b:1-164 [126820] picpiclink
  5. 2ai8 picpic
    automatically matched to d1bs4a_
    complexed with ni, sb7
    1. region c:1-164 [126821] picpiclink
  6. 1g2a picpic
    complexed with bb2, ni
    1. chain a [65109] picpiclink
    2. chain b [65110] picpiclink
    3. chain c [65111] picpiclink
  7. 1xen picpic
    automatically matched to d1bs4a_
    complexed with fe, fmt
    1. region a:1-164 [121912] picpiclink
  8. 1bs4 picpic
    complexed with 2pe, so4, zn3
    1. chain a [42287] picpiclink
    2. chain b [42288] picpiclink
    3. chain c [42289] picpiclink
  9. 1icj picpic
    complexed with ni, pgo, so4
    1. chain a [42284] picpiclink
    2. chain b [42285] picpiclink
    3. chain c [42286] picpiclink
  10. 1bsz picpic
    complexed with 2pe, of1, so4
    1. chain a [42281] picpiclink
    2. chain b [42282] picpiclink
    3. chain c [42283] picpiclink
  11. 1bs6 picpic
    complexed with ni1, ni2, so4
    1. chain a [42290] picpiclink
    2. chain b [42291] picpiclink
    3. chain c [42292] picpiclink
  12. 1bs8 picpic
    complexed with so4, zn3, zno
    1. chain a [42293] picpiclink
    2. chain b [42294] picpiclink
    3. chain c [42295] picpiclink
  13. 1lru picpic
    complexed with antibiotic actinonin
    complexed with bb2, so4, zn
    1. chain a [74228] picpiclink
    2. chain b [74229] picpiclink
    3. chain c [74230] picpiclink
  14. 1g27 picpic
    complexed with bb1, ni
    1. chain a [65106] picpiclink
    2. chain b [65107] picpiclink
    3. chain c [65108] picpiclink
  15. 1bs7 picpic
    complexed with ni1, so4
    1. chain a [42299] picpiclink
    2. chain b [42300] picpiclink
    3. chain c [42301] picpiclink
  16. 1bs5 picpic
    complexed with so4, zn3
    1. chain a [42296] picpiclink
    2. chain b [42297] picpiclink
    3. chain c [42298] picpiclink
  17. 1bsj picpic
    complexed with co, mln, po4
    1. chain a [42302] picpiclink
  18. 1bsk picpic
    complexed with mln, po4, zn
    1. chain a [42303] picpiclink
  19. 1dff picpic
    complexed with zn
    1. chain a [42304] picpiclink
  20. 2def picpic
    complexed with ni; mutant
    1. chain a [42305] picpiclink
  21. 1def picpic
    incorrect model(?)
    complexed with zn
    1. chain a [42306] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk