Structural Classification of Proteins

Superfamily: Peptide deformylase

: nickel-dependent enzyme
uperfamily

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Peptide deformylase [56419]
alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
Superfamily: Peptide deformylase [56420]
nickel-dependent enzyme
uperfamily

Families:

Peptide deformylase [56421] (9)
1. Peptide deformylase [56422]
  1. Escherichia coli [TaxId: 562] [56423] (21)
    1. 1xeo
      automatically matched to d1bs4a_
      complexed with co, fmt
      1. region a:1-164 [121913]
    2. 1xem
      automatically matched to d1bs4a_
      complexed with fmt, zn
      1. region a:1-164 [121911]
    3. 2ai8
      automatically matched to d1bs4a_
      complexed with ni, sb7
      1. region a:1-164 [126819]
    4. 2ai8
      automatically matched to d1bs4a_
      complexed with ni, sb7
      1. region b:1-164 [126820]
    5. 2ai8
      automatically matched to d1bs4a_
      complexed with ni, sb7
      1. region c:1-164 [126821]
    6. 1g2a
      complexed with bb2, ni
      1. chain a [65109]
      2. chain b [65110]
      3. chain c [65111]
    7. 1xen
      automatically matched to d1bs4a_
      complexed with fe, fmt
      1. region a:1-164 [121912]
    8. 1bs4
      complexed with 2pe, so4, zn3
      1. chain a [42287]
      2. chain b [42288]
      3. chain c [42289]
    9. 1icj
      complexed with ni, pgo, so4
      1. chain a [42284]
      2. chain b [42285]
      3. chain c [42286]
    10. 1bsz
      complexed with 2pe, of1, so4
      1. chain a [42281]
      2. chain b [42282]
      3. chain c [42283]
    11. 1bs6
      complexed with ni1, ni2, so4
      1. chain a [42290]
      2. chain b [42291]
      3. chain c [42292]
    12. 1bs8
      complexed with so4, zn3, zno
      1. chain a [42293]
      2. chain b [42294]
      3. chain c [42295]
    13. 1lru
      complexed with antibiotic actinonin
      complexed with bb2, so4, zn
      1. chain a [74228]
      2. chain b [74229]
      3. chain c [74230]
    14. 1g27
      complexed with bb1, ni
      1. chain a [65106]
      2. chain b [65107]
      3. chain c [65108]
    15. 1bs7
      complexed with ni1, so4
      1. chain a [42299]
      2. chain b [42300]
      3. chain c [42301]
    16. 1bs5
      complexed with so4, zn3
      1. chain a [42296]
      2. chain b [42297]
      3. chain c [42298]
    17. 1bsj
      complexed with co, mln, po4
      1. chain a [42302]
    18. 1bsk
      complexed with mln, po4, zn
      1. chain a [42303]
    19. 1dff
      complexed with zn
      1. chain a [42304]
    20. 2def
      complexed with ni; mutant
      1. chain a [42305]
    21. 1def
      incorrect model(?)
      complexed with zn
      1. chain a [42306]
  2. Pseudomonas aeruginosa [TaxId: 287] [75578] (4)
    1. 1ix1
      complexed with antibiotic actinonin
      complexed with bb2, mha, zn
      1. chain a [90712]
      2. chain b [90713]
    2. 1n5n
      complexed with gol, zn; mutant
      1. chain a [85336]
      2. chain b [85337]
    3. 1s17
      complexed with gnr, gol, ni
      1. chain a [98335]
      2. chain b [98336]
    4. 1lry
      complexed with antibiotic actinonin
      complexed with bb2, zn
      1. chain a [74231]
  3. Leptospira interrogans [TaxId: 173] [103340] (1)
    SQ Q72S74
    1. 1y6h
      complexed with cbx, gly, zn
      1. chain a [116505]
      2. chain b [116506]
  4. Staphylococcus aureus [TaxId: 1280] [75579] (6)
    SQ Q9F4L4
    1. 1lm4
      complexed with csw, fe, gol
      1. chain a [84626]
      2. chain b [84627]
    2. 1lmh
      complexed with mse, zn; mutant
      1. chain a [74036]
    3. 1q1y
      complexed with bb2, zn
      1. chain a [104480]
    4. 1lqw
      complexed with zn
      1. chain a [74210]
      2. chain b [74211]
    5. 2ai9
      automatically matched to d1lm4a_
      complexed with ni, so4
      1. region a:0-182 [126822]
    6. 2ai9
      automatically matched to d1lm4a_
      complexed with ni, so4
      1. region b:0-182 [126823]
  5. Streptococcus pneumoniae [TaxId: 1313] [90057] (1)
    1. 1lm6
      complexed with csw, fe, gol
      1. chain a [84628]
  6. Thermotoga maritima [TaxId: 2336] [90058] (1)
    1. 1lme
      complexed with ocs
      1. chain a [84629]
      2. chain b [84630]
  7. Bacillus stearothermophilus [TaxId: 1422] [75580] (1)
    1. 1lqy
      complexed with antibiotic actinonin
      complexed with bb2, ni
      1. chain a [74212]
  8. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [75581] (3)
    1. 1rl4
      complexed with bl5, brr, co
      1. chain a [97636]
      2. chain b [97637]
    2. 1rqc
      complexed with co
      1. chain a [97732]
      2. chain b [97733]
      3. chain c [97734]
      4. chain d [97735]
      5. chain e [97736]
      6. chain f [97737]
      7. chain g [97738]
      8. chain h [97739]
      9. chain i [97740]
      10. chain j [97741]
    3. 1jym
      complexed with mse, ocl
      1. chain a [71957]
      2. chain b [71958]
      3. chain c [71959]
      4. chain d [71960]
      5. chain e [71961]
      6. chain f [71962]
      7. chain g [71963]
      8. chain h [71964]
      9. chain i [71965]
      10. chain j [71966]
  9. Thermus thermophilus [TaxId: 274] [118165] (1)
    SQ P43522
    1. 1v3y
      1. chain a [113508]
      2. chain b [113509]