Family: Peptide deformylase

Lineage:

1. Root: scop
2. Class: Alpha and beta proteins (a+b) [53931]
   Mainly antiparallel beta sheets (segregated alpha and beta regions)
3. Fold: Peptide deformylase [56419]
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
4. Superfamily: Peptide deformylase [56420]
   nickel-dependent enzyme
   uperfamily
5. Family: Peptide deformylase [56421]

Protein Domains:

1. Peptide deformylase [56422]
   1. Escherichia coli [TaxId: 562] [56423] (21)
      1. 1xeo
         automatically matched to d1bs4a_
         complexed with co, fmt
         1. region a:1-164 [121913]
      2. 1xem
         automatically matched to d1bs4a_
         complexed with fmt, zn
         1. region a:1-164 [121911]
      3. 2ai8
         automatically matched to d1bs4a_
         complexed with ni, sb7
         1. region a:1-164 [126819]
      4. 2ai8
         automatically matched to d1bs4a_
         complexed with ni, sb7
         1. region b:1-164 [126820]
      5. 2ai8
         automatically matched to d1bs4a_
         complexed with ni, sb7
         1. region c:1-164 [126821]
      6. 1g2a
         complexed with bb2, ni
         1. chain a [65109]
         2. chain b [65110]
         3. chain c [65111]
      7. 1xen
         automatically matched to d1bs4a_
         complexed with fe, fmt
         1. region a:1-164 [121912]
      8. 1bs4
         complexed with 2pe, so4, zn3
         1. chain a [42287]
         2. chain b [42288]
         3. chain c [42289]
      9. 1icj
         complexed with ni, pgo, so4
         1. chain a [42284]
         2. chain b [42285]
         3. chain c [42286]
      10. 1bsz
          complexed with 2pe, of1, so4
          1. chain a [42281]
          2. chain b [42282]
          3. chain c [42283]
      11. 1bs6
          complexed with ni1, ni2, so4
          1. chain a [42290]
          2. chain b [42291]
          3. chain c [42292]
      12. 1bs8
          complexed with so4, zn3, zno
          1. chain a [42293]
          2. chain b [42294]
          3. chain c [42295]
      13. 1lru
          complexed with antibiotic actinonin
          complexed with bb2, so4, zn
          1. chain a [74228]
          2. chain b [74229]
          3. chain c [74230]
      14. 1g27
          complexed with bb1, ni
          1. chain a [65106]
          2. chain b [65107]
          3. chain c [65108]
      15. 1bs7
          complexed with ni1, so4
          1. chain a [42299]
          2. chain b [42300]
          3. chain c [42301]
      16. 1bs5
          complexed with so4, zn3
          1. chain a [42296]
          2. chain b [42297]
          3. chain c [42298]
      17. 1bsj
          complexed with co, mln, po4
          1. chain a [42302]
      18. 1bsk
          complexed with mln, po4, zn
          1. chain a [42303]
      19. 1dff
          complexed with zn
          1. chain a [42304]
      20. 2def
          complexed with ni; mutant
          1. chain a [42305]
      21. 1def
          incorrect model(?)
          complexed with zn
          1. chain a [42306]
   2. Pseudomonas aeruginosa [TaxId: 287] [75578] (4)
      1. 1ix1
         complexed with antibiotic actinonin
         complexed with bb2, mha, zn
         1. chain a [90712]
         2. chain b [90713]
      2. 1n5n
         complexed with gol, zn; mutant
         1. chain a [85336]
         2. chain b [85337]
      3. 1s17
         complexed with gnr, gol, ni
         1. chain a [98335]
         2. chain b [98336]
      4. 1lry
         complexed with antibiotic actinonin
         complexed with bb2, zn
         1. chain a [74231]
   3. Leptospira interrogans [TaxId: 173] [103340] (1)
      SQ Q72S74
      1. 1y6h
         complexed with cbx, gly, zn
         1. chain a [116505]
         2. chain b [116506]
   4. Staphylococcus aureus [TaxId: 1280] [75579] (6)
      SQ Q9F4L4
      1. 1lm4
         complexed with csw, fe, gol
         1. chain a [84626]
         2. chain b [84627]
      2. 1lmh
         complexed with mse, zn; mutant
         1. chain a [74036]
      3. 1q1y
         complexed with bb2, zn
         1. chain a [104480]
      4. 1lqw
         complexed with zn
         1. chain a [74210]
         2. chain b [74211]
      5. 2ai9
         automatically matched to d1lm4a_
         complexed with ni, so4
         1. region a:0-182 [126822]
      6. 2ai9
         automatically matched to d1lm4a_
         complexed with ni, so4
         1. region b:0-182 [126823]
   5. Streptococcus pneumoniae [TaxId: 1313] [90057] (1)
      1. 1lm6
         complexed with csw, fe, gol
         1. chain a [84628]
   6. Thermotoga maritima [TaxId: 2336] [90058] (1)
      1. 1lme
         complexed with ocs
         1. chain a [84629]
         2. chain b [84630]
   7. Bacillus stearothermophilus [TaxId: 1422] [75580] (1)
      1. 1lqy
         complexed with antibiotic actinonin
         complexed with bb2, ni
         1. chain a [74212]
   8. Malaria parasite (Plasmodium falciparum) [TaxId: 5833] [75581] (3)
      1. 1rl4
         complexed with bl5, brr, co
         1. chain a [97636]
         2. chain b [97637]
      2. 1rqc
         complexed with co
         1. chain a [97732]
         2. chain b [97733]
         3. chain c [97734]
         4. chain d [97735]
         5. chain e [97736]
         6. chain f [97737]
         7. chain g [97738]
         8. chain h [97739]
         9. chain i [97740]
         10. chain j [97741]
      3. 1jym
         complexed with mse, ocl
         1. chain a [71957]
         2. chain b [71958]
         3. chain c [71959]
         4. chain d [71960]
         5. chain e [71961]
         6. chain f [71962]
         7. chain g [71963]
         8. chain h [71964]
         9. chain i [71965]
         10. chain j [71966]
   9. Thermus thermophilus [TaxId: 274] [118165] (1)
      SQ P43522
      1. 1v3y
         1. chain a [113508]
         2. chain b [113509]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk