Structural Classification of Proteins

Fold: Cystatin-like

: Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet

Lineage:

Root: scop
Class: Alpha and beta proteins (a+b) [53931]
Mainly antiparallel beta sheets (segregated alpha and beta regions)
Fold: Cystatin-like [54402]
Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet

Superfamilies:

Cystatin/monellin [54403] (6)
has a additional strand at the N-terminus
uperfamily
1. Monellin [54404] (1)
  1. Monellin, B & A chains together [54405]
    1. Serendipity berry (Dioscoreophyllum cumminsii) [TaxId: 3457] [54406] (12)
      1. 2o9u
        automatically matched to d1fa3a_
        complexed with so4
        
        region x:1001-1096 [138960]
      2. 1mol
        single-chain version
        
        chain a [37988]
        chain b [37989]
      3. 1n98
        all-D monellin
        
        chain b,a [80337]
      4. 1iv7
        single-chain version
        mutant
        
        chain a [90707]
        chain b [90708]
      5. 1iv9
        single-chain version
        
        chain a [90709]
        chain b [90710]
      6. 1krl
        racemic DL-monellin structure
        
        chain b,a [68853]
        chain d,c [68854]
      7. 4mon
        
        chain b,a [37990]
        chain d,c [37991]
      8. 3mon
        
        chain b,a [37992]
        chain d,c [37993]
        chain f,e [37994]
        chain h,g [37995]
      9. 1fa3
        single-chain version
        
        chain a [37996]
      10. 1m9g
        single-chain version
        mutant
        
        chain a [84902]
      11. 1fuw
        single-chain version
        mutant
        
        chain a [60033]
      12. 1mnl
        single-chain version
        
        chain a [37997]
2. Cystatins [54407] (6)
  1. Phytocystatin [54408]
    1. Japanese rice (Oryza sativa), subsp. japonica, oryzacystatin-I [TaxId: 4530] [54409] (1)
      1. 1eqk
        
        chain a [37998]
  2. Cystatin [54410]
    1. Chicken (Gallus gallus) [TaxId: 9031] [54411] (4)
      1. 1cew
        
        chain i [37999]
      2. 1yvb
        automatically matched to d1a67__
        complexed with gol
        
        region i:9-116 [124093]
      3. 1a67
        
        chain a [38000]
      4. 1a90
        mutant
        
        chain a [38001]
  3. Cystatin A (stefin A) [54412]
    1. Human (Homo sapiens) [TaxId: 9606] [54413] (9)
      1. 1nb5
        complexed with bma, nag
        
        chain i [80381]
        chain j [80382]
        chain k [80383]
        chain l [80384]
      2. 1nb3
        complexed with bma, nag
        
        chain i [80373]
        chain j [80374]
        chain k [80375]
        chain l [80376]
      3. 1n9j
        segment-swapped dimer
        
        chain a [80341]
        chain b [80342]
      4. 1dvc
        
        chain a [38003]
      5. 1dvd
        
        chain a [38002]
      6. 1cyu
        mutant
        
        chain a [38004]
      7. 1gd3
        mutant
        
        chain a [60437]
      8. 1cyv
        mutant
        
        chain a [38005]
      9. 1gd4
        mutant
        
        chain a [60438]
  4. Cystatin B (stefin B) [54414]
    1. Human (Homo sapiens) [TaxId: 9606] [54415] (1)
      1. 1stf
        complexed with cbm; mutant
        
        chain i [38006]
  5. Cystatin C [64231]
    1. Human (Homo sapiens) [TaxId: 9606] [64232] (4)
      SQ P01034 37-146
      1. 1r4c
        dimeric form with segment-swapping
        
        chain a [104793]
        chain b [104794]
        chain c [104795]
        chain d [104796]
        chain e [104797]
        chain f [104798]
        chain g [104799]
        chain h [104800]
      2. 1g96
        dimeric form with 3d domain swapping; only one monomer in the PDB entry
        complexed with cl, gol
        
        chain a [60393]
      3. 1tij
        automatically matched to d1g96a_
        
        region a:10-120 [119281]
      4. 1tij
        automatically matched to d1g96a_
        
        region b:10-120 [119282]
  6. Cystatin D [110819]
    1. Human (Homo sapiens) [TaxId: 9606] [110820] (2)
      SQ P28325 31-142
      1. 1roa
        mutant
        
        chain a [105024]
      2. 1rn7
        mutant
        
        chain a [105019]
3. Cathelicidin motif [82592] (1)
  cathelin-like domain
  1. Cathelicidin motif of protegrin-3 [82593]
    antimicrobial protein
    1. Pig (Sus scrofa) [TaxId: 9823] [82594] (5)
      1. 1kwi
        
        chain a [77564]
      2. 1lxe
        swapped dimer
        
        chain a [78291]
      3. 1pfp
        complexed with cse
        
        chain a [94656]
      4. 1n5h
        
        chain a [85329]
      5. 1n5p
        
        chain a [85338]
4. Staphopain B, prodomain [117846] (1)
  1. Staphopain B, prodomain [117847]
    includes additional beta-sheet subdomain, connecting the N-terminal cystatin-like domain to the catalytic domain/mature enzyme
    1. Staphylococcus aureus [TaxId: 1280] [117848] (1)
      SQ Q70UQ9 41-393
      1. 1x9y
        
        region a:41-211 [115012]
        region b:41-211 [115014]
        region c:41-211 [115016]
        region d:41-211 [115018]
5. Latexin-like [142991] (1)
  Pfam 06907; duplication: consits of two domains of this fold
  1. Latexin [142992]
    1. Human (Homo sapiens) [TaxId: 9606] [142993] (4)
      SQ Q9BS40 1-98! SQ Q9BS40 99-217
      1. 2bo9
        complexed with acn, mpd, nag, val, zn
        
        region b:1-98 [128898]
      2. 2bo9
        complexed with acn, mpd, nag, val, zn
        
        region b:99-217 [128899]
      3. 2bo9
        automatically matched to 2BO9 B:1-98
        complexed with acn, mpd, nag, val, zn
        
        region d:1-98 [128901]
      4. 2bo9
        automatically matched to 2BO9 B:99-217
        complexed with acn, mpd, nag, val, zn
        
        region d:99-217 [128902]
6. PepSY-like [159955] (1)
  Pfam 03413; Peptidase propeptide and YPEB domain
  1. Uncharacterized protein YpmB [159956]
    duplication; consist of two similar domains
    1. Bacillus subtilis [TaxId: 1423] [159957] (2)
      SQ P54396 34-98! SQ P54396 99-161
      1. 2gu3
        complexed with ni
        
        region a:99-161 [147178]
      2. 2gu3
        complexed with ni
        
        region a:34-98 [147179]
Amine oxidase N-terminal region [54416] (1)
uperfamily
1. Amine oxidase N-terminal region [54417] (5)
  duplication: contains two domains of this fold
  1. Copper amine oxidase, domains 1 and 2 [54418]
    1. Escherichia coli [TaxId: 562] [54419] (11)
      1. 1d6z
        
        region a:91-185 [38015]
        region a:186-300 [38016]
        region b:91-185 [38017]
        region b:186-300 [38018]
      2. 1oac
        complexed with ca, cu
        
        region a:91-185 [38007]
        region a:186-300 [38008]
        region b:91-185 [38009]
        region b:186-300 [38010]
      3. 1qak
        complexed with ca, cu; mutant
        
        region a:91-185 [38011]
        region a:186-300 [38012]
        region b:91-185 [38013]
        region b:186-300 [38014]
      4. 1dyu
        complexed with ca, cu; mutant
        
        region a:91-185 [38019]
        region a:186-300 [38020]
        region b:91-185 [38021]
        region b:186-300 [38022]
      5. 1d6u
        
        region a:91-185 [38031]
        region a:186-300 [38032]
        region b:91-185 [38033]
        region b:186-300 [38034]
      6. 1d6y
        
        region a:91-185 [38035]
        region a:186-300 [38036]
        region b:91-185 [38037]
        region b:186-300 [38038]
      7. 1jrq
        complexed with ca, cu; mutant
        
        region a:91-185 [67186]
        region a:186-300 [67187]
        region b:91-185 [67190]
        region b:186-300 [67191]
      8. 1qaf
        complexed with ca, cu, gol; mutant
        
        region a:91-185 [38027]
        region a:186-300 [38028]
        region b:91-185 [38029]
        region b:186-300 [38030]
      9. 1spu
        complexed with ca, cu
        
        region a:91-185 [38023]
        region a:186-300 [38024]
        region b:91-185 [38025]
        region b:186-300 [38026]
      10. 1lvn
        complexed with ca, cu, tyt
        
        region a:91-185 [91139]
        region a:186-300 [91140]
        region b:91-185 [91143]
        region b:186-300 [91144]
      11. 1qal
        complexed with ca, cu; mutant
        
        region a:91-185 [38039]
        region a:186-300 [38040]
        region b:91-185 [38041]
        region b:186-300 [38042]
    2. Pea seedling (Pisum sativum) [TaxId: 3888] [54420] (2)
      SQ Q43077
      1. 1w2z
        complexed with 1cu, iod, mn, nag, xe
        
        region a:6-98 [114107]
        region a:99-206 [114108]
        region b:6-98 [114110]
        region b:99-206 [114111]
        region c:6-98 [114113]
        region c:99-206 [114114]
        region d:6-98 [114116]
        region d:99-206 [114117]
      2. 1ksi
        complexed with cu, mn, nag
        
        region a:6-98 [38043]
        region a:99-206 [38044]
        region b:6-98 [38045]
        region b:99-206 [38046]
    3. Arthrobacter globiformis [TaxId: 1665] [54421] (91)
      SQ P46881 9-628
      1. 1w6g
        automatically matched to d1av4_2
        complexed with cu, gol, na, so4
        
        region a:9-96 [120661]
      2. 1w6g
        automatically matched to d1av4_3
        complexed with cu, gol, na, so4
        
        region a:97-211 [120662]
      3. 1rjo
        complexed with cu, gol, na, so4, xe
        
        region a:9-96 [111833]
        region a:97-211 [111834]
      4. 2cg1
        automatically matched to d1av4_2
        complexed with 11r, cu, gol, na, so4
        
        region a:9-96 [130415]
      5. 2cg1
        automatically matched to d1av4_3
        complexed with 11r, cu, gol, na, so4
        
        region a:97-211 [130416]
      6. 2cfg
        automatically matched to d1av4_2
        complexed with cu, gol, na, r4a, so4
        
        region a:9-96 [130377]
      7. 2cfg
        automatically matched to d1av4_3
        complexed with cu, gol, na, r4a, so4
        
        region a:97-211 [130378]
      8. 2cfg
        automatically matched to d1av4_2
        complexed with cu, gol, na, r4a, so4
        
        region b:9-96 [130380]
      9. 2cfg
        automatically matched to d1av4_3
        complexed with cu, gol, na, r4a, so4
        
        region b:97-211 [130381]
      10. 1w4n
        automatically matched to d1av4_2
        complexed with cu, gol, na, so4, tcq
        
        region a:9-96 [120628]
      11. 1w4n
        automatically matched to d1av4_3
        complexed with cu, gol, na, so4, tcq
        
        region a:97-211 [120629]
      12. 1w4n
        automatically matched to d1av4_2
        complexed with cu, gol, na, so4, tcq
        
        region b:9-96 [120631]
      13. 1w4n
        automatically matched to d1av4_3
        complexed with cu, gol, na, so4, tcq
        
        region b:97-211 [120632]
      14. 1sih
        complexed with cu, gol, mbq, na, so4
        
        region a:9-96 [105576]
        region a:97-211 [105577]
      15. 1sii
        complexed with cu, gol, na, nbq, so4
        
        region a:9-96 [105579]
        region a:97-211 [105580]
      16. 2cfd
        automatically matched to d1av4_2
        complexed with cu, gol, na, r4a, so4
        
        region a:9-96 [130370]
      17. 2cfd
        automatically matched to d1av4_3
        complexed with cu, gol, na, r4a, so4
        
        region a:97-211 [130371]
      18. 2cfd
        automatically matched to d1av4_2
        complexed with cu, gol, na, r4a, so4
        
        region b:9-96 [130373]
      19. 2cfd
        automatically matched to d1av4_3
        complexed with cu, gol, na, r4a, so4
        
        region b:97-211 [130374]
      20. 2bt3
        automatically matched to d1av4_2
        complexed with cu, gol, na, r4a, so4
        
        region a:9-96 [129138]
      21. 2bt3
        automatically matched to d1av4_3
        complexed with cu, gol, na, r4a, so4
        
        region a:97-211 [129139]
      22. 2cfk
        automatically matched to d1av4_2
        complexed with cu, gol, na, r5a, r5b, so4
        
        region a:9-96 [130385]
      23. 2cfk
        automatically matched to d1av4_3
        complexed with cu, gol, na, r5a, r5b, so4
        
        region a:97-211 [130386]
      24. 2cfw
        automatically matched to d1av4_2
        complexed with cu, gol, na, r7u, so4
        
        region a:9-96 [130393]
      25. 2cfw
        automatically matched to d1av4_3
        complexed with cu, gol, na, r7u, so4
        
        region a:97-211 [130394]
      26. 2cfl
        automatically matched to d1av4_2
        complexed with cu, gol, na, r6a, so4
        
        region a:9-96 [130388]
      27. 2cfl
        automatically matched to d1av4_3
        complexed with cu, gol, na, r6a, so4
        
        region a:97-211 [130389]
      28. 2cg0
        automatically matched to d1av4_2
        complexed with cu, gol, na, r9a, so4
        
        region a:9-96 [130412]
      29. 2cg0
        automatically matched to d1av4_3
        complexed with cu, gol, na, r9a, so4
        
        region a:97-211 [130413]
      30. 1w5z
        automatically matched to d1av4_2
        complexed with 3ty, cu, gol, na, so4
        
        region a:9-96 [120646]
      31. 1w5z
        automatically matched to d1av4_3
        complexed with 3ty, cu, gol, na, so4
        
        region a:97-211 [120647]
      32. 2e2u
        automatically matched to d1av4a2
        complexed with 4hl, cu, oty
        
        region a:9-96 [146659]
      33. 2e2u
        automatically matched to d1av4a3
        complexed with 4hl, cu, oty
        
        region a:97-211 [146660]
      34. 2e2u
        automatically matched to d1av4a2
        complexed with 4hl, cu, oty
        
        region b:9-96 [146662]
      35. 2e2u
        automatically matched to d1av4a3
        complexed with 4hl, cu, oty
        
        region b:97-211 [146663]
      36. 2d1w
        automatically matched to d1av4_2
        complexed with cu, tts; mutant
        
        region a:9-96 [131146]
      37. 2d1w
        automatically matched to d1av4_3
        complexed with cu, tts; mutant
        
        region a:97-211 [131147]
      38. 2d1w
        automatically matched to d1av4_2
        complexed with cu, tts; mutant
        
        region b:9-96 [131149]
      39. 2d1w
        automatically matched to d1av4_3
        complexed with cu, tts; mutant
        
        region b:97-211 [131150]
      40. 2zl8
        automatically matched to d1av4a2
        complexed with cu, esb
        
        region a:9-96 [154621]
      41. 2zl8
        automatically matched to d1av4a3
        complexed with cu, esb
        
        region a:97-211 [154622]
      42. 2zl8
        automatically matched to d1av4a2
        complexed with cu, esb
        
        region b:9-96 [154624]
      43. 2zl8
        automatically matched to d1av4a3
        complexed with cu, esb
        
        region b:97-211 [154625]
      44. 2yx9
        automatically matched to d1av4a2
        complexed with cu, dpq; mutant
        
        region a:9-96 [153818]
      45. 2yx9
        automatically matched to d1av4a3
        complexed with cu, dpq; mutant
        
        region a:97-211 [153819]
      46. 2yx9
        automatically matched to d1av4a2
        complexed with cu, dpq; mutant
        
        region b:9-96 [153821]
      47. 2yx9
        automatically matched to d1av4a3
        complexed with cu, dpq; mutant
        
        region b:97-211 [153822]
      48. 2cwu
        automatically matched to d1av4_2
        complexed with 1ty, cu; mutant
        
        region a:9-96 [130941]
      49. 2cwu
        automatically matched to d1av4_3
        complexed with 1ty, cu; mutant
        
        region a:97-211 [130942]
      50. 2cwu
        automatically matched to d1av4_2
        complexed with 1ty, cu; mutant
        
        region b:9-96 [130944]
      51. 2cwu
        automatically matched to d1av4_3
        complexed with 1ty, cu; mutant
        
        region b:97-211 [130945]
      52. 2cwt
        automatically matched to d1av4_2
        complexed with cu; mutant
        
        region a:9-96 [130935]
      53. 2cwt
        automatically matched to d1av4_3
        complexed with cu; mutant
        
        region a:97-211 [130936]
      54. 2cwt
        automatically matched to d1av4_2
        complexed with cu; mutant
        
        region b:9-96 [130938]
      55. 2cwt
        automatically matched to d1av4_3
        complexed with cu; mutant
        
        region b:97-211 [130939]
      56. 1ui8
        complexed with cu; mutant
        
        region a:9-96 [99420]
        region a:97-211 [99421]
        region b:9-96 [99423]
        region b:97-211 [99424]
      57. 2cwv
        automatically matched to d1av4_2
        complexed with 2ty, cu; mutant
        
        region a:9-96 [130947]
      58. 2cwv
        automatically matched to d1av4_3
        complexed with 2ty, cu; mutant
        
        region a:97-211 [130948]
      59. 2cwv
        automatically matched to d1av4_2
        complexed with 2ty, cu; mutant
        
        region b:9-96 [130950]
      60. 2cwv
        automatically matched to d1av4_3
        complexed with 2ty, cu; mutant
        
        region b:97-211 [130951]
      61. 1wmn
        automatically matched to d1av4_2
        complexed with co
        
        region a:9-96 [121051]
      62. 1wmn
        automatically matched to d1av4_3
        complexed with co
        
        region a:97-211 [121052]
      63. 1wmn
        automatically matched to d1av4_2
        complexed with co
        
        region b:9-96 [121054]
      64. 1wmn
        automatically matched to d1av4_3
        complexed with co
        
        region b:97-211 [121055]
      65. 2e2v
        automatically matched to d1av4a2
        complexed with bzz, cu, oty
        
        region a:9-96 [146665]
      66. 2e2v
        automatically matched to d1av4a3
        complexed with bzz, cu, oty
        
        region a:97-211 [146666]
      67. 2e2v
        automatically matched to d1av4a2
        complexed with bzz, cu, oty
        
        region b:9-96 [146668]
      68. 2e2v
        automatically matched to d1av4a3
        complexed with bzz, cu, oty
        
        region b:97-211 [146669]
      69. 1ivw
        complexed with cu, tpq
        
        region a:9-96 [71457]
        region a:97-211 [71458]
        region b:9-96 [71460]
        region b:97-211 [71461]
      70. 1iu7
        complexed with cu, tpq
        
        region a:9-96 [76807]
        region a:97-211 [76808]
        region b:9-96 [76810]
        region b:97-211 [76811]
      71. 1wmp
        automatically matched to d1av4_2
        complexed with co
        
        region a:9-96 [121063]
      72. 1wmp
        automatically matched to d1av4_3
        complexed with co
        
        region a:97-211 [121064]
      73. 1wmo
        automatically matched to d1av4_2
        complexed with ni
        
        region a:9-96 [121057]
      74. 1wmo
        automatically matched to d1av4_3
        complexed with ni
        
        region a:97-211 [121058]
      75. 1wmo
        automatically matched to d1av4_2
        complexed with ni
        
        region b:9-96 [121060]
      76. 1wmo
        automatically matched to d1av4_3
        complexed with ni
        
        region b:97-211 [121061]
      77. 1wmp
        automatically matched to d1av4_2
        complexed with co
        
        region b:9-96 [121066]
      78. 1wmp
        automatically matched to d1av4_3
        complexed with co
        
        region b:97-211 [121067]
      79. 1iqy
        complexed with ni, tpq
        
        region a:9-96 [76764]
        region a:97-211 [76765]
        region b:9-96 [76767]
        region b:97-211 [76768]
      80. 1iqx
        complexed with co, tpq
        
        region a:9-96 [76758]
        region a:97-211 [76759]
        region b:9-96 [76761]
        region b:97-211 [76762]
      81. 2e2t
        automatically matched to d1av4a2
        complexed with cu, oty, phz
        
        region a:9-96 [146656]
      82. 2e2t
        automatically matched to d1av4a3
        complexed with cu, oty, phz
        
        region a:97-211 [146657]
      83. 1ivu
        complexed with cu
        
        region a:9-96 [71445]
        region a:97-211 [71446]
        region b:9-96 [71448]
        region b:97-211 [71449]
      84. 1ui7
        complexed with cu; mutant
        
        region a:9-96 [99414]
        region a:97-211 [99415]
        region b:9-96 [99417]
        region b:97-211 [99418]
      85. 1ivv
        complexed with cu, dah
        
        region a:9-96 [71451]
        region a:97-211 [71452]
        region b:9-96 [71454]
        region b:97-211 [71455]
      86. 1w6c
        automatically matched to d1av4_2
        complexed with cu, na
        
        region a:9-96 [120654]
      87. 1w6c
        automatically matched to d1av4_3
        complexed with cu, na
        
        region a:97-211 [120655]
      88. 1av4
        complexed with cu
        
        region a:9-96 [38049]
        region a:97-211 [38050]
      89. 1avk
        
        region a:9-96 [38047]
        region a:97-211 [38048]
      90. 1ivx
        complexed with cu, tpq
        
        region a:9-96 [71463]
        region a:97-211 [71464]
        region b:9-96 [71466]
        region b:97-211 [71467]
      91. 1avl
        complexed with cu
        
        region a:9-96 [38051]
        region a:97-211 [38052]
    4. Yeast (Hansenula polymorpha) [TaxId: 4905] [54422] (26)
      1. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region a:18-115 [139223]
      2. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region a:116-236 [139224]
      3. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region b:18-115 [139226]
      4. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region b:116-236 [139227]
      5. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region c:18-115 [139229]
      6. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region c:116-236 [139230]
      7. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region d:18-115 [139232]
      8. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region d:116-236 [139233]
      9. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region e:18-115 [139235]
      10. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region e:116-236 [139236]
      11. 2oqe
        automatically matched to d1ekma2
        complexed with cu, gol, sme, xe
        
        region f:18-115 [139238]
      12. 2oqe
        automatically matched to d1a2va3
        complexed with cu, gol, sme, xe
        
        region f:116-236 [139239]
      13. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region a:18-115 [139180]
      14. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region a:116-236 [139181]
      15. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region b:18-115 [139183]
      16. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region b:116-236 [139184]
      17. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region c:18-115 [139186]
      18. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region c:116-236 [139187]
      19. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region d:18-115 [139189]
      20. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region d:116-236 [139190]
      21. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region e:18-115 [139192]
      22. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region e:116-236 [139193]
      23. 2oov
        automatically matched to d1ekma2
        complexed with cu, gol, po4, sme
        
        region f:18-115 [139195]
      24. 2oov
        automatically matched to d1a2va3
        complexed with cu, gol, po4, sme
        
        region f:116-236 [139196]
      25. 1ekm
        complexed with zn
        
        region a:17-115 [38053]
        region a:116-236 [38054]
        region b:17-115 [38055]
        region b:116-236 [38056]
        region c:17-115 [38057]
        region c:116-236 [38058]
      26. 1a2v
        complexed with cu
        
        region a:18-115 [38059]
        region a:116-236 [38060]
        region b:18-115 [38061]
        region b:116-236 [38062]
        region c:18-115 [38063]
        region c:116-236 [38064]
        region d:18-115 [38065]
        region d:116-236 [38066]
        region e:18-115 [38067]
        region e:116-236 [38068]
        region f:18-115 [38069]
        region f:116-236 [38070]
  2. Lysyl oxidase PplO, domains 1 and 2 [102806]
    1. Yeast (Pichia pastoris) [TaxId: 4922] [102807] (4)
      SQ Q96X16 43-777
      1. 1w7c
        automatically matched to d1n9ea2
        complexed with bma, ca, cl, cu, imd, mg, nag
        
        region a:43-169 [145815]
      2. 1w7c
        automatically matched to d1n9ea3
        complexed with bma, ca, cl, cu, imd, mg, nag
        
        region a:170-315 [145816]
      3. 1n9e
        complexed with ca, cu, nag, so4
        
        region a:41-169 [91709]
        region a:170-315 [91710]
        region b:41-169 [91712]
        region b:170-315 [91713]
        region c:41-169 [91715]
        region c:170-315 [91716]
        region d:41-169 [91718]
        region d:170-315 [91719]
      4. 1rky
        complexed with ca, cl, cu, imd, man, mg, nag, xe
        
        region a:43-169 [111857]
        region a:170-315 [111858]
DsbC/DsbG N-terminal domain-like [54423] (1)
uperfamily
1. DsbC/DsbG N-terminal domain-like [54424] (3)
  1. Disulfide bond isomerase, DsbC, N-terminal domain [54425]
    1. Escherichia coli [TaxId: 562] [54426] (7)
      SQ P21892
      1. 1eej
        complexed with mes
        
        region a:1-60 [38071]
        region b:1-60 [38072]
      2. 1jzo
        mutant
        
        region a:1-60 [84268]
        region b:1-60 [84270]
      3. 2iyj
        automatically matched to d1jzda2
        complexed with so4
        
        region a:1-60 [147840]
      4. 2iyj
        automatically matched to d1jzda2
        complexed with so4
        
        region b:1-60 [147841]
      5. 1jzd
        complexed with DsbD-alpha
        mutant
        
        region a:-3-60 [84258]
        region b:1-60 [84260]
      6. 1g0t
        complexed with peg; mutant
        
        region a:1-60 [76197]
        region b:1-60 [76199]
      7. 1tjd
        
        region a:1-60 [112443]
    2. Haemophilus influenzae [TaxId: 727] [110821] (1)
      SQ P45111 20-228
      1. 1t3b
        
        region a:2-60 [106342]
  2. Thiol:disulfide interchange protein DsbG, N-terminal domain [110822]
    1. Escherichia coli [TaxId: 562] [110823] (10)
      SQ P77202
      1. 1v58
        complexed with so4
        
        region a:2-61 [108372]
        region b:2-61 [108374]
      2. 2h0h
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region a:2-61 [135934]
      3. 2h0h
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region b:2-61 [135936]
      4. 1v57
        complexed with so4
        
        region a:2-61 [108368]
        region b:2-61 [108370]
      5. 2iy2
        automatically matched to d1v57a2
        complexed with cd
        
        region a:3-61 [147834]
      6. 2iy2
        automatically matched to d1v57a2
        complexed with cd
        
        region b:3-61 [147835]
      7. 2h0i
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region a:2-61 [135938]
      8. 2h0i
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region b:2-61 [135940]
      9. 2h0g
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region a:2-61 [135930]
      10. 2h0g
        automatically matched to d1v57a2
        complexed with so4; mutant
        
        region b:2-61 [135932]
NTF2-like [54427] (30)
has a beta-alpha(2)-beta insertion after the main helix
uperfamily
1. Scytalone dehydratase [54428] (1)
  1. Scytalone dehydratase [54429]
    1. Fungus (Magnaporthe grisea) [TaxId: 148305] [54430] (8)
      1. 1idp
        mutant
        
        chain a [83685]
        chain b [83686]
        chain c [83687]
      2. 3std
        complexed with ca, mq0
        
        chain a [38073]
        chain b [38074]
        chain c [38075]
      3. 6std
        
        chain a [38076]
        chain b [38077]
        chain c [38078]
      4. 7std
        
        chain a [38079]
        chain b [38080]
        chain c [38081]
      5. 5std
        
        chain a [38082]
        chain b [38083]
        chain c [38084]
      6. 2std
        complexed with crp, so4
        
        chain a [38085]
      7. 4std
        
        chain a [38086]
        chain b [38087]
        chain c [38088]
      8. 1std
        complexed with bfs, so4
        
        chain a [38089]
2. NTF2-like [54431] (11)
  1. Nuclear transport factor-2 (NTF2) [54432]
    1. Rat (Rattus norvegicus) [TaxId: 10116] [54433] (10)
      SQ P61972
      1. 1gy6
        
        chain a [70736]
        chain b [70737]
      2. 1jb2
        mutant
        
        chain a [71624]
        chain b [71625]
      3. 1oun
        
        chain a [38090]
        chain b [38091]
      4. 1jb4
        mutant
        
        chain a [71626]
        chain b [71627]
      5. 1ask
        mutant
        
        chain a [38094]
        chain b [38095]
      6. 1jb5
        mutant
        
        chain a [71628]
        chain b [71629]
      7. 1ar0
        mutant
        
        chain a [38092]
        chain b [38093]
      8. 1qma
        
        chain a [38096]
        chain b [38097]
        chain c [38098]
        chain d [38099]
      9. 1u5o
        mutant
        
        chain a [113044]
        chain b [113045]
      10. 1a2k
        complexed with gdp, mg, so4
        
        chain a [38100]
        chain b [38101]
    2. Human (Homo sapiens) [TaxId: 9606] [75373] (1)
      1. 1gy5
        mutant
        
        chain a [70734]
        chain b [70735]
    3. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [75374] (2)
      1. 1gy7
        mutant
        
        chain a [70738]
        chain b [70739]
        chain c [70740]
        chain d [70741]
      2. 1gyb
        complexed with FxFG nucleoporin repeat
        mutant
        
        chain a [70744]
        chain b [70745]
        chain c [70746]
        chain d [70747]
    4. Cryptosporidium parvum [TaxId: 5807] [159958] (2)
      SQ Q5CQI4 4-127
      1. 1zo2
        
        region a:10-126 [146021]
      2. 1zo2
        automatically matched to 1ZO2 A:10-126
        
        region b:10-126 [146022]
  2. NTF2-related export protein 1 (p15) [69675]
    1. Human (Homo sapiens) [TaxId: 9606] [69676] (2)
      1. 1jkg
        
        chain a [66795]
      2. 1jn5
        
        chain a [66921]
  3. NTF2-like domain of Tip associating protein, TAP [69677]
    1. Human (Homo sapiens) [TaxId: 9606] [69678] (2)
      1. 1jkg
        
        chain b [66796]
      2. 1jn5
        
        chain b [66922]
  4. NTF2-like domain of mRNA export factor MEX67 [89847]
    similar to the TAP domain; forms complex with MTR2 similar to the TAP-p15 complex
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89848] (1)
      Ypl169C
      1. 1of5
        complexed with hg
        
        chain a [86933]
    2. Yeast (Candida albicans) [TaxId: 5476] [102808] (1)
      1. 1q40
        complexed with gol
        
        chain b [95771]
        chain d [95773]
  5. mRNA transport regulator MTR2 [89849]
    similar to p15; forms complex with MEX67 similar to the TAP-p15 complex
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [89850] (1)
      Ykl186C
      1. 1of5
        complexed with hg
        
        chain b [86934]
    2. Yeast (Candida albicans) [TaxId: 5476] [102809] (2)
      1. 1q42
        
        chain a [95776]
      2. 1q40
        complexed with gol
        
        chain a [95770]
        chain c [95772]
  6. UBP3-associated protein BRE5 [159959]
    1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [159960] (4)
      SQ P53741 1-141
      1. 2qiy
        automatically matched to 1ZX2 A:1-141
        
        region a:3-141 [150815]
      2. 2qiy
        automatically matched to 1ZX2 A:1-141
        
        region b:4-141 [150816]
      3. 1zx2
        
        region a:1-141 [146033]
      4. 1zx2
        automatically matched to 1ZX2 A:1-141
        
        region b:2-141 [146034]
3. Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A [89851] (3)
  1. Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A [89852]
    1. Mouse (Mus musculus) [TaxId: 10090] [89853] (1)
      1. 1hkx
        complexed with cl, dtt, tbr
        
        chain a [83567]
        chain b [83568]
        chain c [83569]
        chain d [83570]
        chain e [83571]
        chain f [83572]
        chain g [83573]
        chain h [83574]
        chain i [83575]
        chain j [83576]
        chain k [83577]
        chain l [83578]
        chain m [83579]
        chain n [83580]
    2. Caenorhabditis elegans [TaxId: 6239] [159961] (7)
      SQ Q9U6Q0 343-471
      1. 2f86
        
        region b:343-471 [146998]
      2. 2f86
        automatically matched to 2F86 B:343-471
        
        region d:343-471 [146999]
      3. 2f86
        automatically matched to 2F86 B:343-471
        
        region f:343-471 [147000]
      4. 2f86
        automatically matched to 2F86 B:343-471
        
        region h:343-471 [147001]
      5. 2f86
        automatically matched to 2F86 B:343-471
        
        region j:343-471 [147002]
      6. 2f86
        automatically matched to 2F86 B:343-471
        
        region l:343-471 [147003]
      7. 2f86
        automatically matched to 2F86 B:343-471
        
        region n:343-471 [147004]
    3. Human (Homo sapiens) [TaxId: 9606] [159962] (6)
      SQ Q8N4I3 387-521
      1. 2ux0
        complexed with gly; mutant
        
        region a:387-521 [152231]
      2. 2ux0
        automatically matched to 2UX0 A:387-521
        complexed with gly; mutant
        
        region b:387-520 [152232]
      3. 2ux0
        automatically matched to 2UX0 A:387-521
        complexed with gly; mutant
        
        region c:387-521 [152233]
      4. 2ux0
        automatically matched to 2UX0 A:387-521
        complexed with gly; mutant
        
        region d:387-521 [152234]
      5. 2ux0
        automatically matched to 2UX0 A:387-521
        complexed with gly; mutant
        
        region e:387-520 [152235]
      6. 2ux0
        automatically matched to 2UX0 A:387-521
        complexed with gly; mutant
        
        region f:387-520 [152236]
4. Limonene-1,2-epoxide hydrolase-like [89854] (2)
  1. Limonene-1,2-epoxide hydrolase [89855]
    1. Rhodococcus erythropolis [TaxId: 1833] [89856] (2)
      1. 1nww
        complexed with hpn, mes
        
        chain a [86306]
        chain b [86307]
      2. 1nu3
        complexed with mes, mse, vpr; mutant
        
        chain a [86170]
        chain b [86171]
  2. Uncharacterized protein Mb2760 [159963]
    1. Mycobacterium tuberculosis [TaxId: 1773] [159964] (3)
      SQ Q7TY00 13-144
      1. 2bng
        complexed with ca
        
        region a:13-144 [146156]
      2. 2bng
        automatically matched to 2BNG A:13-144
        complexed with ca
        
        region b:13-144 [146157]
      3. 2bng
        automatically matched to 2BNG A:13-144
        complexed with ca
        
        region c:13-144 [146158]
5. SnoaL-like polyketide cyclase [102810] (5)
  1. Nogalonic acid methyl ester cyclase SnoaL [102811]
    1. Streptomyces nogalater [TaxId: 38314] [102812] (1)
      1. 1sjw
        complexed with ngv
        
        chain a [98899]
  2. Aklanonic acid methyl ester cyclase, AknH [159965]
    1. Streptomyces galilaeus [TaxId: 33899] [159966] (8)
      SQ O52646 2-141
      1. 2f99
        automatically matched to 2F98 A:2-141
        complexed with akv, so4
        
        region a:2-141 [147011]
      2. 2f99
        automatically matched to 2F98 A:2-141
        complexed with akv, so4
        
        region b:2-141 [147012]
      3. 2f99
        automatically matched to 2F98 A:2-141
        complexed with akv, so4
        
        region c:2-141 [147013]
      4. 2f99
        automatically matched to 2F98 A:2-141
        complexed with akv, so4
        
        region d:2-141 [147014]
      5. 2f98
        complexed with ngv, so4
        
        region a:2-141 [147007]
      6. 2f98
        automatically matched to 2F98 A:2-141
        complexed with ngv, so4
        
        region b:2-141 [147008]
      7. 2f98
        automatically matched to 2F98 A:2-141
        complexed with ngv, so4
        
        region c:2-141 [147009]
      8. 2f98
        automatically matched to 2F98 A:2-141
        complexed with ngv, so4
        
        region d:2-141 [147010]
  3. Nogalamycin biosynthesis protein SnoL [159967]
    1. Streptomyces nogalater [TaxId: 38314] [159968] (2)
      SQ Q9RN64 2-139
      1. 2gex
        
        region a:2-139 [147112]
      2. 2gex
        automatically matched to 2GEX A:2-139
        
        region b:2-134 [147113]
  4. Putative hydroxylase AclR [159969]
    1. Streptomyces galilaeus [TaxId: 33899] [159970] (2)
      SQ Q1XDX7 2-145
      1. 2gey
        complexed with gol, peg, pg4
        
        region a:2-145 [147114]
      2. 2gey
        automatically matched to 2GEY A:2-145
        complexed with gol, peg, pg4
        
        region c:2-145 [147115]
  5. Uncharacterized protein BPSS0132 [159971]
    1. Burkholderia pseudomallei [TaxId: 28450] [159972] (1)
      SQ Q63P16 1-131
      1. 3ebt
        complexed with unl
        
        region a:1-131 [158086]
6. PhzA/PhzB-like [102813] (4)
  1. Hypothetical protein YesE [102814]
    1. Bacillus subtilis [TaxId: 1423] [102815] (1)
      1. 1s5a
        structural genomics
        complexed with act, gol
        
        chain a [98525]
        chain b [98526]
        chain c [98527]
        chain d [98528]
  2. Uncharacterized protein BTHI0051 [159973]
    1. Burkholderia thailandensis [TaxId: 57975] [159974] (2)
      SQ Q2T2I4 10-139
      1. 3ec9
        complexed with act, gol
        
        region a:10-139 [158092]
      2. 3ec9
        automatically matched to 3EC9 A:10-139
        complexed with act, gol
        
        region b:10-139 [158093]
  3. Uncharacterized protein Ava2261 [159975]
    1. Anabaena variabilis [TaxId: 1172] [159976] (2)
      SQ Q3MAV7 1-133
      1. 3dmc
        complexed with act
        
        region a:1-133 [157805]
      2. 3dmc
        automatically matched to 3DMC A:1-133
        complexed with act
        
        region b:1-133 [157806]
  4. Uncharacterized protein PA3332 [159977]
    1. Pseudomonas aeruginosa [TaxId: 287] [159978] (1)
      SQ Q9HYR3 1-129
      1. 1z1s
        complexed with mg, pge
        
        region a:1-129 [145958]
7. Ketosteroid isomerase-like [54434] (4)
  1. Delta-5-3-ketosteroid isomerase, steroid delta-isomerase, KSI [54435]
    1. Comamonas testosteroni, also known as Pseudomonas testosteroni [TaxId: 285] [54436] (14)
      1. 1ohp
        automatically matched to d8cho__
        complexed with esr; mutant
        
        region a:1-125 [118702]
      2. 1ohp
        automatically matched to d8cho__
        complexed with esr; mutant
        
        region b:201-325 [118703]
      3. 1ohp
        automatically matched to d8cho__
        complexed with esr; mutant
        
        region c:1-125 [118704]
      4. 1ohp
        automatically matched to d8cho__
        complexed with esr; mutant
        
        region d:201-325 [118705]
      5. 1ohs
        complexed with 5sd; mutant
        
        region a:1-125 [118706]
      6. 1ohs
        automatically matched to 1OHS A:1-125
        complexed with 5sd; mutant
        
        region b:201-325 [118707]
      7. 1ohs
        automatically matched to 1OHS A:1-125
        complexed with 5sd; mutant
        
        region c:1-125 [118708]
      8. 1ohs
        automatically matched to 1OHS A:1-125
        complexed with 5sd; mutant
        
        region d:201-325 [118709]
      9. 1ocv
        mutant
        
        chain a [86810]
        chain b [86811]
        chain c [86812]
        chain d [86813]
      10. 8cho
        complexed with p4c
        
        chain a [38108]
      11. 1qjg
        
        chain a [38102]
        chain b [38103]
        chain c [38104]
        chain d [38105]
        chain e [38106]
        chain f [38107]
      12. 1ogz
        complexed with equ; mutant
        
        chain a [92976]
      13. 1isk
        
        chain a [38109]
        chain b [38110]
      14. 1buq
        complexed with an1, ash; mutant
        
        chain a [38111]
        chain b [38112]
    2. Pseudomonas putida [TaxId: 303] [54437] (23)
      SQ P07445
      1. 1oh0
        complexed with bme, equ
        
        chain a [87004]
        chain b [87005]
      2. 3cpo
        automatically matched to d1e3rb_
        complexed with fp2; mutant
        
        region a:3-127 [156902]
      3. 2inx
        automatically matched to d1e3rb_
        complexed with ffp; mutant
        
        region a:2-127 [147741]
      4. 1ea2
        
        chain a [64860]
      5. 1oho
        complexed with equ; mutant
        
        region a:2-127 [118701]
      6. 1opy
        
        chain a [38113]
      7. 1e3v
        complexed with dxc
        
        chain a [59205]
        chain b [59206]
      8. 1dmm
        mutant
        
        chain a [38114]
      9. 1ogx
        complexed with equ; mutant
        
        chain a [87002]
        chain b [87003]
      10. 1dmq
        mutant
        
        chain a [38116]
      11. 1dmn
        mutant
        
        chain a [38115]
      12. 1w6y
        complexed with bme, equ; mutant
        
        region a:2-128 [120678]
      13. 1e97
        mutant
        
        chain a [64803]
      14. 1gs3
        complexed with equ; mutant
        
        chain a [76327]
      15. 1cqs
        complexed with equ; mutant
        
        chain a [83165]
        chain b [83166]
      16. 1w00
        mutant
        
        region a:2-128 [120554]
      17. 1w00
        automatically matched to 1W00 A:2-128
        mutant
        
        region b:2-128 [120555]
      18. 1w01
        mutant
        
        chain a [108979]
        chain b [108980]
      19. 1vzz
        mutant
        
        chain a [108977]
        chain b [108978]
      20. 1w02
        mutant
        
        chain a [108981]
      21. 1c7h
        mutant
        
        chain a [38117]
      22. 1e3r
        complexed with and; mutant
        
        chain a [59199]
        chain b [59200]
      23. 1k41
        mutant
        
        chain a [77252]
        chain b [77253]
  2. Hypothetical protein Rv0760c [142994]
    1. Mycobacterium tuberculosis [TaxId: 1773] [142995] (1)
      SQ P71817 5-136
      1. 2a15
        complexed with nca
        
        region a:5-136 [125973]
    2. Mycobacterium tuberculosis H37Rv [TaxId: 83332] [159979] (10)
      1. 2z76
        automatically matched to d2a15a1
        complexed with act, lda, mpd
        
        region a:6-136 [154186]
      2. 2z76
        automatically matched to d2a15a1
        complexed with act, lda, mpd
        
        region b:6-136 [154187]
      3. 2z7a
        automatically matched to d2a15a1
        complexed with act
        
        region a:6-136 [154192]
      4. 2z7a
        automatically matched to d2a15a1
        complexed with act
        
        region b:6-136 [154193]
      5. 2z7a
        automatically matched to d2a15a1
        complexed with act
        
        region c:6-136 [154194]
      6. 2z7a
        automatically matched to d2a15a1
        complexed with act
        
        region d:7-135 [154195]
      7. 2z77
        automatically matched to d2a15a1
        complexed with act, he7, nca
        
        region a:6-136 [154188]
      8. 2z77
        automatically matched to d2a15a1
        complexed with act, he7, nca
        
        region b:6-135 [154189]
      9. 2z77
        automatically matched to d2a15a1
        complexed with act, he7, nca
        
        region c:6-136 [154190]
      10. 2z77
        automatically matched to d2a15a1
        complexed with act, he7, nca
        
        region d:6-135 [154191]
8. Ring hydroxylating beta subunit [54438] (7)
  Pfam 00866
  1. Naphthalene 1,2-dioxygenase beta subunit [54439]
    1. Pseudomonas putida [TaxId: 303] [54440] (16)
      1. 1o7n
        complexed with edo, fe, fes, ind, oxy, so4
        
        chain b [81164]
      2. 2hmj
        automatically matched to d1eg9b_
        complexed with edo, fe, fes, so4; mutant
        
        region b:3-194 [136587]
      3. 2hmo
        automatically matched to d1eg9b_
        complexed with 3nt, edo, fe, fes, so4
        
        region b:3-194 [136602]
      4. 2hmm
        automatically matched to d1eg9b_
        complexed with an3, edo, fe, fes, so4; mutant
        
        region b:3-194 [136596]
      5. 2hmk
        automatically matched to d1eg9b_
        complexed with edo, fe, fes, pey, so4; mutant
        
        region b:3-194 [136590]
      6. 2hmn
        automatically matched to d1eg9b_
        complexed with an3, edo, fe, fes, so4; mutant
        
        region b:3-194 [136599]
      7. 1eg9
        complexed with fes, ind, of1, so4
        
        chain b [38120]
      8. 1o7g
        complexed with edo, fe, fes, npy, so4
        
        chain b [81136]
      9. 1uuv
        automatically matched to d1eg9b_
        complexed with edo, fe, fes, ind, no, so4
        
        region b:502-694 [119701]
      10. 1o7m
        complexed with edo, fe, fes, oxy, so4
        
        chain b [81161]
      11. 2hml
        automatically matched to d1eg9b_
        complexed with edo, fe, fes, pey, so4; mutant
        
        region b:3-194 [136593]
      12. 1o7w
        complexed with edo, fe, fes, so4
        
        chain b [81170]
      13. 1o7p
        complexed with edo, fe, fes, ndh, so4
        
        chain b [81167]
      14. 1o7h
        complexed with edo, fe, fes, so4
        
        chain b [81139]
      15. 1uuw
        automatically matched to d1eg9b_
        complexed with fe, fes, no, so4
        
        region b:502-694 [119704]
      16. 1ndo
        complexed with fe, fes
        
        chain b [38121]
        chain d [38122]
        chain f [38123]
    2. Rhodococcus sp. ncimb12038 [TaxId: 92694] [142996] (6)
      SQ Q7BSK6 6-172
      1. 2b1x
        complexed with fe, fes, mpd
        
        region b:513-679 [127677]
      2. 2b1x
        automatically matched to 2B1X B:513-679
        complexed with fe, fes, mpd
        
        region d:513-679 [127680]
      3. 2b1x
        automatically matched to 2B1X B:513-679
        complexed with fe, fes, mpd
        
        region f:513-679 [127683]
      4. 2b24
        automatically matched to 2B1X B:513-679
        complexed with fe, fes, ind
        
        region b:515-679 [127692]
      5. 2b24
        automatically matched to 2B1X B:513-679
        complexed with fe, fes, ind
        
        region d:515-679 [127695]
      6. 2b24
        automatically matched to 2B1X B:513-679
        complexed with fe, fes, ind
        
        region f:515-679 [127698]
  2. Biphenyl dioxygenase small subunit BphA2 [110824]
    1. Rhodococcus sp. (strain RHA1) [TaxId: 101510] [110825] (2)
      SQ Q53123 11-187
      1. 1uli
        complexed with fe2, fes
        
        chain b [107923]
        chain d [107926]
        chain f [107929]
      2. 1ulj
        complexed with bnl, fe2, fes
        
        chain b [107932]
        chain d [107935]
        chain f [107938]
  3. Small subunit of cumene dioxygenase CumA2 [142997]
    1. Pseudomonas fluorescens [TaxId: 294] [142998] (1)
      SQ Q51744 6-186
      1. 1wql
        complexed with fe2, fes, oxy
        
        region b:5-186 [121172]
  4. Nitrobenzene dioxygenase beta subunit, NBDO-beta [142999]
    1. Comamonas sp. JS765 [TaxId: 58226] [143000] (3)
      SQ Q8RTL3 1-194
      1. 2bmo
        complexed with edo, eoh, fe, fes, ni
        
        region b:1-194 [128806]
      2. 2bmr
        automatically matched to 2BMO B:1-194
        complexed with 3nt, edo, eoh, fe, fes, ni
        
        region b:1-194 [128812]
      3. 2bmq
        automatically matched to 2BMO B:1-194
        complexed with edo, eoh, fe, fes, nbz, ni
        
        region b:1-194 [128809]
  5. Putative hydroxylase subunit Saro3860 [159980]
    1. Novosphingobium aromaticivorans [TaxId: 48935] [159981] (1)
      SQ A4XDU4 6-162
      1. 3eby
        complexed with cl
        
        region a:6-162 [158087]
  6. Benzoate 1,2-dioxygenase beta subunit BenB [159982]
    1. Burkholderia mallei [TaxId: 13373] [159983] (1)
      SQ Q62E64 1-163
      1. 3e99
        complexed with act
        
        region a:1-163 [158067]
9. Penicillin binding protein 2a (PBP2A), N-terminal domain [82595] (1)
  some sequence similarity to KSI
  1. Penicillin binding protein 2a (PBP2A), N-terminal domain [82596]
    1. Staphylococcus aureus [TaxId: 1280] [82597] (5)
      SQ O54286 27-668
      1. 1vqq
        complexed with cd, cl; mutant
        
        region a:27-138 [114009]
        region b:27-138 [114012]
      2. 1mws
        complexed with cd, cl, nc1; mutant
        
        region a:27-138 [79592]
        region b:27-138 [79595]
      3. 1mwt
        complexed with cd, cl, pg1; mutant
        
        region a:27-138 [79598]
        region b:27-138 [79601]
      4. 1mwu
        complexed with cd, cl, mc1; mutant
        
        region a:27-138 [79604]
        region b:27-138 [79607]
      5. 1mwr
        complexed with cd, cl, mse; mutant
        
        region a:27-138 [79586]
        region b:27-138 [79589]
10. Orange carotenoid protein, C-terminal domain [82598] (1)
  1. Orange carotenoid protein, C-terminal domain [82599]
    1. Cyanobacteria (Arthrospira maxima) [TaxId: 129910] [82600] (1)
      1. 1m98
        complexed with cl, heq, suc
        
        region a:176-317 [78867]
        region b:176-315 [78869]
11. Hypothetical protein egc068 from a soil-derived mobile gene cassette [110826] (1)
  1. Hypothetical protein egc068 from a soil-derived mobile gene cassette [110827]
    1. uncultured organism [TaxId: 155900] [110828] (1)
      SQ Q99IU3
      1. 1tuh
        complexed with act
        
        chain a [107345]
12. PA1314-like [110829] (1)
  COG4460
  1. Hypothetical protein PA1314 [110830]
    1. Pseudomonas aeruginosa [TaxId: 287] [110831] (1)
      SQ Q9I430
      1. 1tp6
        Structural genomics target
        
        chain a [107184]
13. TIM44-like [143001] (2)
  contains extra N-terminal helices but lacks the beta-hairpin in the superfamily-specific insertion
  1. Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain [143002]
    1. Human (Homo sapiens) [TaxId: 9606] [143003] (1)
      SQ O43615 270-451
      1. 2cw9
        complexed with 1pe
        
        region a:270-451 [130920]
    2. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [159984] (1)
      SQ Q01852 234-425
      1. 2fxt
        
        region a:234-425 [147051]
14. Sbal0622-like [159985] (1)
  PfamB 002762
  1. Uncharacterized protein Sbal0622 [159986]
    1. Shewanella baltica [TaxId: 62322] [159987] (12)
      SQ A3D088 3-126
      1. 3blz
        complexed with edo, peg
        
        region a:3-126 [155403]
      2. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region b:3-126 [155404]
      3. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region c:3-126 [155405]
      4. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region d:3-126 [155406]
      5. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region e:3-126 [155407]
      6. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region f:3-125 [155408]
      7. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region g:3-126 [155409]
      8. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region h:3-125 [155410]
      9. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region i:3-125 [155411]
      10. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region j:3-126 [155412]
      11. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region k:3-125 [155413]
      12. 3blz
        automatically matched to 3BLZ A:3-126
        complexed with edo, peg
        
        region l:3-125 [155414]
15. CHU142-like [159988] (1)
  single domain covered by PfamB 000743 in the N-terminal part and PfamB 000860 in the C-terminal part
  1. Uncharacterized protein CHU142 [159989]
    1. Cytophaga hutchinsonii [TaxId: 985] [159990] (4)
      SQ Q11V67 1-122
      1. 2r4i
        complexed with cit, gol, ipa
        
        region a:1-122 [151576]
      2. 2r4i
        automatically matched to 2R4I A:1-122
        complexed with cit, gol, ipa
        
        region b:1-121 [151577]
      3. 2r4i
        automatically matched to 2R4I A:1-122
        complexed with cit, gol, ipa
        
        region c:2-121 [151578]
      4. 2r4i
        automatically matched to 2R4I A:1-122
        complexed with cit, gol, ipa
        
        region d:6-122 [151579]
16. SO0125-like [159991] (2)
  PfamB 003666
  1. Uncharacterized protein Sfri1973 [159992]
    1. Shewanella frigidimarina [TaxId: 56812] [159993] (6)
      SQ Q082J6 23-147
      1. 3bb9
        complexed with edo
        
        region a:27-147 [155049]
      2. 3bb9
        automatically matched to 3BB9 A:27-147
        complexed with edo
        
        region b:27-147 [155050]
      3. 3bb9
        automatically matched to 3BB9 A:27-147
        complexed with edo
        
        region c:27-147 [155051]
      4. 3bb9
        automatically matched to 3BB9 A:27-147
        complexed with edo
        
        region d:27-147 [155052]
      5. 3bb9
        automatically matched to 3BB9 A:27-147
        complexed with edo
        
        region e:27-147 [155053]
      6. 3bb9
        automatically matched to 3BB9 A:27-147
        complexed with edo
        
        region f:28-147 [155054]
  2. Uncharacterized protein SO0125 [159994]
    1. Shewanella oneidensis [TaxId: 70863] [159995] (1)
      SQ Q8EKG8 1-121
      1. 3b7c
        complexed with cl, edo
        
        region a:1-121 [154928]
17. SAV4671-like [159996] (1)
  PfamB 000442; uncertain annotation of some members as 3-dehydroquinate dehydratase
  1. Uncharacterized protein SAV4671 [159997]
    1. Streptomyces avermitilis [TaxId: 33903] [159998] (3)
      SQ Q82EE4 5-157
      1. 3cnx
        complexed with cl, gol, mg, peg, pg6, pge, unl
        
        region a:5-157 [156850]
      2. 3cnx
        automatically matched to 3CNX A:5-157
        complexed with cl, gol, mg, peg, pg6, pge, unl
        
        region b:6-157 [156851]
      3. 3cnx
        automatically matched to 3CNX A:5-157
        complexed with cl, gol, mg, peg, pg6, pge, unl
        
        region c:5-157 [156852]
18. BxeB1374-like [159999] (2)
  similar dimer to KSI
  1. Uncharacterized protein ECA3500 [160000]
    1. Pectobacterium atrosepticum [TaxId: 29471] [160001] (4)
      SQ Q6D1E8 1-127
      1. 2rcd
        complexed with cl
        
        region a:1-127 [151872]
      2. 2rcd
        automatically matched to 2RCD A:1-127
        complexed with cl
        
        region b:1-127 [151873]
      3. 2rcd
        automatically matched to 2RCD A:1-127
        complexed with cl
        
        region c:1-127 [151874]
      4. 2rcd
        automatically matched to 2RCD A:1-127
        complexed with cl
        
        region d:1-127 [151875]
  2. Hypothetical protein BxeB1374 [160002]
    1. Burkholderia xenovorans [TaxId: 36873] [160003] (2)
      SQ Q13MU9 1-128
      1. 2owp
        complexed with edo, so4
        
        region a:1-128 [149049]
      2. 2owp
        automatically matched to 2OWP A:1-128
        complexed with edo, so4
        
        region b:1-128 [149050]
19. Atu0744-like [160004] (1)
  PfamB 003773
  1. Uncharacterized protein Atu0744 [160005]
    1. Agrobacterium tumefaciens [TaxId: 358] [160006] (2)
      SQ Q7D0S4 1-117
      1. 3dxo
        complexed with peg, pge
        
        region a:1-117 [157933]
      2. 3dxo
        automatically matched to 3DXO A:1-117
        complexed with peg, pge
        
        region b:1-117 [157934]
20. Rpa4348-like [160007] (2)
  PfamB 000085
  1. Uncharacterized protein BxeB2092 [160008]
    1. Burkholderia xenovorans [TaxId: 36873] [160009] (1)
      SQ Q13PU4 1-127
      1. 3en8
        complexed with act, ca, peg, pg4
        
        region a:1-127 [158188]
  2. Uncharacterized protein Rpa4348 [160010]
    1. Rhodopseudomonas palustris [TaxId: 1076] [160011] (1)
      SQ Q6N1Q6 1-135
      1. 3dm8
        complexed with ce9
        
        region a:1-135 [157804]
21. Ava4193-like [160012] (1)
  PfamB 183524
  1. Uncharacterized protein Ava4193 [160013]
    1. Anabaena variabilis [TaxId: 1172] [160014] (4)
      SQ Q3M5E4 2-129
      1. 3ecf
        complexed with so4, unl
        
        region a:2-129 [158094]
      2. 3ecf
        automatically matched to 3ECF A:2-129
        complexed with so4, unl
        
        region b:2-129 [158095]
      3. 3ecf
        automatically matched to 3ECF A:2-129
        complexed with so4, unl
        
        region c:2-129 [158096]
      4. 3ecf
        automatically matched to 3ECF A:2-129
        complexed with so4, unl
        
        region d:2-129 [158097]
22. YybH-like [160015] (1)
  PfamB 052627
  1. Hypothetical protein YybH [160016]
    1. Bacillus subtilis [TaxId: 1423] [160017] (4)
      SQ P37496 1-128
      1. 2gxf
        complexed with mes
        
        region a:1-128 [147191]
      2. 2gxf
        automatically matched to 2GXF A:1-128
        complexed with mes
        
        region b:1-128 [147192]
      3. 2gxf
        automatically matched to 2GXF A:1-128
        complexed with mes
        
        region c:1-128 [147193]
      4. 2gxf
        automatically matched to 2GXF A:1-128
        complexed with mes
        
        region d:1-128 [147194]
23. PFL3262-like [160018] (1)
  Pfam 07080; DUF1348
  1. Hypothetical protein PFL3262 [160019]
    1. Pseudomonas fluorescens [TaxId: 294] [160020] (4)
      SQ Q4KBL6 5-159
      1. 2imj
        complexed with act, edo
        
        region a:5-159 [147725]
      2. 2imj
        automatically matched to 2IMJ A:5-159
        complexed with act, edo
        
        region b:5-159 [147726]
      3. 2imj
        automatically matched to 2IMJ A:5-159
        complexed with act, edo
        
        region c:5-159 [147727]
      4. 2imj
        automatically matched to 2IMJ A:5-159
        complexed with act, edo
        
        region d:5-156 [147728]
24. Exig0174-like [160021] (1)
  PfamB 092483
  1. Uncharacterized protein Exig0174 [160022]
    1. Exiguobacterium sibiricum 255-15 [TaxId: 262543] [160023] (2)
      SQ B1YHC8 5-122
      1. 3er7
        complexed with cl, peg
        
        region a:5-122 [158191]
      2. 3er7
        automatically matched to 3ER7 A:5-122
        complexed with cl, peg
        
        region b:5-122 [158192]
25. Rv3472-like [160024] (2)
  similar trimer to Scytalone dehydratase
  1. Uncharacterized protein NpunR3134 [160025]
    1. Nostoc punctiforme [TaxId: 272131] [160026] (3)
      SQ B2IXS6 1-133
      1. 2rgq
        complexed with gol, k, peg
        
        region a:1-133 [152018]
      2. 2rgq
        automatically matched to 2RGQ A:1-133
        complexed with gol, k, peg
        
        region b:1-133 [152019]
      3. 2rgq
        automatically matched to 2RGQ A:1-133
        complexed with gol, k, peg
        
        region c:1-133 [152020]
  2. Uncharacterized protein Rv3472 [160027]
    1. Mycobacterium tuberculosis [TaxId: 1773] [160028] (3)
      SQ O06337 1-167
      1. 2chc
        mutant
        
        region a:1-167 [146394]
      2. 2chc
        automatically matched to 2CHC A:1-167
        mutant
        
        region b:6-166 [146395]
      3. 2chc
        automatically matched to 2CHC A:1-167
        mutant
        
        region c:7-165 [146396]
26. VirB8-like [160029] (2)
  Pfam 04335
  1. Type IV secretion system protein VirB8 [160030]
    1. Agrobacterium tumefaciens [TaxId: 358] [160031] (2)
      SQ P17798 92-231
      1. 2cc3
        complexed with mpd
        
        region a:92-231 [146384]
      2. 2cc3
        automatically matched to 2CC3 A:92-231
        complexed with mpd
        
        region b:92-231 [146385]
    2. Brucella melitensis [TaxId: 29459] [160032] (5)
      SQ Q7CEG3 97-235
      1. 2bhm
        
        region a:97-235 [146143]
      2. 2bhm
        automatically matched to 2BHM A:97-235
        
        region b:97-235 [146144]
      3. 2bhm
        automatically matched to 2BHM A:97-235
        
        region c:97-235 [146145]
      4. 2bhm
        automatically matched to 2BHM A:97-235
        
        region d:97-235 [146146]
      5. 2bhm
        automatically matched to 2BHM A:97-235
        
        region e:97-235 [146147]
27. ECA1476-like [160033] (1)
  single domain covered by PfamB 006272 in the N-terminal part and PfamB 005262 in the C-terminal part
  1. Uncharacterized protein ECA1476 [160034]
    1. Pectobacterium atrosepticum [TaxId: 29471] [160035] (4)
      SQ Q6D750 3-134
      1. 3d9r
        complexed with gol, na, unl
        
        region a:3-134 [157459]
      2. 3d9r
        automatically matched to 3D9R A:3-134
        complexed with gol, na, unl
        
        region b:3-134 [157460]
      3. 3d9r
        automatically matched to 3D9R A:3-134
        complexed with gol, na, unl
        
        region c:3-134 [157461]
      4. 3d9r
        automatically matched to 3D9R A:3-134
        complexed with gol, na, unl
        
        region d:5-134 [157462]
28. BaiE/LinA-like [160036] (5)
  PfamB 000019; includes sequences of characterized enzymes BaiE and LinA
  1. Uncharacterized protein Saro2766 [160037]
    1. Novosphingobium aromaticivorans [TaxId: 48935] [160038] (1)
      SQ Q2G4M1 2-160
      1. 3ejv
        complexed with edo, pge, unl
        
        region a:2-160 [158181]
  2. Uncharacterized protein Saro3722 [160039]
    1. Novosphingobium aromaticivorans [TaxId: 48935] [160040] (1)
      SQ A4XF70 13-165
      1. 2rfr
        
        region a:1-153 [152000]
  3. Uncharacterized protein Saro1465 [160041]
    1. Novosphingobium aromaticivorans [TaxId: 48935] [160042] (2)
      SQ Q2G8B5 1-149
      1. 3ef8
        complexed with mg, peg, pg4, pge
        
        region a:1-149 [158127]
      2. 3ef8
        automatically matched to 3EF8 A:1-149
        complexed with mg, peg, pg4, pge
        
        region b:1-149 [158128]
  4. Uncharacterized protein NpunR1993 [160043]
    1. Nostoc punctiforme [TaxId: 272131] [160044] (1)
      SQ B2J4W9 9-170
      1. 3cu3
        complexed with edo, mg, peg
        
        region a:9-170 [156988]
  5. Uncharacterized protein Saro3538 [160045]
    1. Novosphingobium aromaticivorans [TaxId: 48935] [160046] (6)
      SQ A4XEN7 1-144
      1. 3b8l
        complexed with cl, gol, peg
        
        region a:1-144 [154955]
      2. 3b8l
        automatically matched to 3B8L A:1-144
        complexed with cl, gol, peg
        
        region b:1-144 [154956]
      3. 3b8l
        automatically matched to 3B8L A:1-144
        complexed with cl, gol, peg
        
        region c:1-144 [154957]
      4. 3b8l
        automatically matched to 3B8L A:1-144
        complexed with cl, gol, peg
        
        region d:1-144 [154958]
      5. 3b8l
        automatically matched to 3B8L A:1-144
        complexed with cl, gol, peg
        
        region e:1-144 [154959]
      6. 3b8l
        automatically matched to 3B8L A:1-144
        complexed with cl, gol, peg
        
        region f:2-144 [154960]
29. Atu0742-like [160047] (1)
  PfamB 017405
  1. Uncharacterized protein Atu0742 [160048]
    1. Agrobacterium tumefaciens [TaxId: 358] [160049] (1)
      SQ A9CJY7 1-123
      1. 2k54
        
        region a:1-123 [148271]
30. SEC-C associated NTF2-like domain [160050] (1)
  there is a C-terminal SEC-C motif, also there can be an additional SEC-C like motif at the N-terminus (there is only C-terminal motif in the new entry 2JQ5)
  1. Hypothetical protein Psyc2064 [160051]
    1. Psychrobacter arcticus [TaxId: 334543] [160052] (1)
      SQ Q4FPZ7 46-158
      1. 2i9w
        complexed with cl, zn
        
        region a:46-158 [147576]
Uracil-DNA glycosylase inhibitor protein [54441] (1)
has an additional strand at the C-terminus and a helix inserted after the first strand
uperfamily
1. Uracil-DNA glycosylase inhibitor protein [54442] (2)
  1. Uracil-DNA glycosylase inhibitor protein [54443]
    1. Bacteriophage pbs1 [TaxId: 10683] [54444] (1)
      1. 1udi
        
        chain i [38124]
    2. Bacteriophage pbs2 [TaxId: 10684] [54445] (17)
      1. 1ugi
        complexed with imd, so4
        
        chain a [38125]
        chain b [38126]
        chain c [38127]
        chain d [38128]
        chain e [38129]
        chain f [38130]
        chain g [38131]
        chain h [38132]
      2. 1ugh
        mutant
        
        chain i [38133]
      3. 2ugi
        complexed with imd
        
        chain a [38134]
        chain b [38135]
      4. 2j8x
        automatically matched to d1lqmh_
        complexed with ure
        
        region b:2-84 [138143]
      5. 2j8x
        automatically matched to d1lqmh_
        complexed with ure
        
        region d:4-84 [138144]
      6. 1uug
        
        chain b [38136]
        chain d [38137]
      7. 2uug
        mutant
        
        chain c [38138]
        chain d [38139]
      8. 1lqg
        
        chain c [78133]
        chain d [78134]
      9. 1lqm
        
        chain b [78142]
        chain d [78144]
        chain f [78146]
        chain h [78148]
      10. 1eui
        
        chain c [38140]
        chain d [38141]
      11. 2zhx
        automatically matched to d1lqmh_
        
        region b:3-84 [154474]
      12. 2zhx
        automatically matched to d1lqmh_
        
        region d:3-84 [154475]
      13. 2zhx
        automatically matched to d1lqmh_
        
        region f:3-84 [154476]
      14. 2zhx
        automatically matched to d1lqmh_
        
        region h:3-84 [154477]
      15. 2zhx
        automatically matched to d1lqmh_
        
        region j:3-84 [154478]
      16. 2zhx
        automatically matched to d1lqmh_
        
        region l:3-84 [154479]
      17. 2zhx
        automatically matched to d1lqmh_
        
        region n:3-84 [154480]
Putative dsDNA mimic [102816] (1)
elaborated with additional structures; some similarity to Uracil-DNA glycosylase (UGI) and Nuclease A (NuiA) inhibitors
uperfamily
1. Putative dsDNA mimic [102817] (1)
  Pfam 04269, DUF440
  1. Hypothetical protein HI1450 [102818]
    putative dsDNA mimic
    1. Haemophilus influenzae [TaxId: 727] [102819] (1)
      1. 1nnv
        structural genomics
        
        chain a [92012]
Pre-PUA domain [88802] (5)
this domain is found in association with the PUA domain in the C-terminal region of Archaeosine tRNA-guanine transglycosylase and related stand-alone proteins
uperfamily
1. Archaeosine tRNA-guanine transglycosylase, C2 domain [88803] (1)
  1. Archaeosine tRNA-guanine transglycosylase, C2 domain [88804]
    the second of the 3 additional C-terminal domains to the TGT-like domain, also includes "linker" C1 domain
    1. Archaeon Pyrococcus horikoshii [TaxId: 53953] [88805] (4)
      1. 1iq8
        complexed with mg, zn
        
        region a:361-505 [83075]
        region b:361-505 [83077]
      2. 1it7
        complexed with gun, mg, zn
        
        region a:361-505 [83079]
        region b:361-505 [83081]
      3. 1it8
        complexed with mg, pq0, zn
        
        region a:361-505 [83083]
        region b:361-505 [83085]
      4. 1j2b
        complexed with mg, zn
        
        region a:361-505 [84012]
        region b:361-505 [84015]
2. Hypothetical protein Ta1423, N-terminal domain [102820] (1)
  1. Hypothetical protein Ta1423, N-terminal domain [102821]
    this protein is related to the C-terminal part (domains C2 and C3) of Archaeosine tRNA-guanine transglycosylase
    1. Archaeon Thermoplasma acidophilum [TaxId: 2303] [102822] (1)
      1. 1q7h
        structural genomics
        complexed with zn
        
        region a:3-68 [96043]
3. Nip7p homolog, N-terminal domain [110832] (1)
  1. Nip7p homolog, N-terminal domain [110833]
    1. Human (Homo sapiens) [TaxId: 9606] [110834] (2)
      SQ Q9Y221
      1. 1sqw
        automatically matched to d1t5ya2
        
        region a:1-94 [119034]
      2. 1t5y
        
        region a:1-94 [106496]
4. Hypothetical protein APE0525, N-terminal domain [143004] (1)
  1. Hypothetical protein APE0525, N-terminal domain [143005]
    1. Archaeon Aeropyrum pernix [TaxId: 56636] [143006] (3)
      SQ Q9YEQ6 1-90
      1. 2cx1
        automatically matched to 1ZS7 A:1-90
        complexed with tla
        
        region a:1-90 [130968]
      2. 1zs7
        complexed with k, po4
        
        region a:1-90 [125594]
      3. 2cx0
        automatically matched to 1ZS7 A:1-90
        complexed with so4
        
        region a:1-90 [130966]
5. AF0587 pre C-terminal domain-like [160053] (1)
  PfamB 006016
  1. Uncharacterized protein AF0587 [160054]
    1. Archaeoglobus fulgidus [TaxId: 2234] [160055] (1)
      SQ O29668 394-459
      1. 2q07
        
        region a:394-459 [149983]