Structural Classification of Proteins
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Fold: Diaminopimelate epimerase-like

mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Diaminopimelate epimerase-like [54505]
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix

Superfamilies:

  1. Diaminopimelate epimerase-like [54506] (4)
    duplication: consists of two similar domain swapped with C-terminal strands
    link to SUPERFAMILY database - Superfamily
    1. Diaminopimelate epimerase [54507] (1)
      1. Diaminopimelate epimerase [54508]
        1. Haemophilus influenzae [TaxId: 727] [54509] (10)
          1. 2gke picpic
            automatically matched to d1bwza1
            complexed with acy, gol, zdp
            1. region a:1-130 [135329] picpiclink
          2. 2gke picpic
            automatically matched to d1bwza2
            complexed with acy, gol, zdp
            1. region a:131-274 [135330] picpiclink
          3. 2gkj picpic
            automatically matched to d1bwza1
            complexed with acy, zdr
            1. region a:1-130 [135331] picpiclink
          4. 2gkj picpic
            automatically matched to d1bwza2
            complexed with acy, zdr
            1. region a:131-274 [135332] picpiclink
          5. 1gqz picpic
            1. region a:1-130 [83311] picpiclink
            2. region a:131-274 [83312] picpiclink
          6. 2q9h picpic
            automatically matched to d1bwza1
            complexed with acy, tla; mutant
            1. region a:1-130 [150143] picpiclink
          7. 2q9h picpic
            automatically matched to d1bwza2
            complexed with acy, tla; mutant
            1. region a:131-274 [150144] picpiclink
          8. 2q9j picpic
            automatically matched to d1bwza1
            complexed with edo, so4; mutant
            1. region a:1-130 [150145] picpiclink
          9. 2q9j picpic
            automatically matched to d1bwza2
            complexed with edo, so4; mutant
            1. region a:131-274 [150146] picpiclink
          10. 1bwz picpic
            1. region a:1-130 [38337] picpiclink
            2. region a:131-274 [38338] picpiclink
    2. PhzC/PhzF-like [89863] (4)
      Pfam 02567
      1. Hypothetical protein YddE [89864]
        1. Escherichia coli [TaxId: 562] [89865] (3)
          SQ P37757
          structural genomics; NESG target ET25
          1. 1qy9 picpic
            Structural genomics target
            complexed with gol, hyd
            1. region a:3-129 [104645] picpiclink
            2. region a:130-297 [104646] picpiclink
            3. region b:3-129 [104647] picpiclink
            4. region b:130-297 [104648] picpiclink
            5. region c:2-129 [104649] picpiclink
            6. region c:130-297 [104650] picpiclink
            7. region d:1-129 [104651] picpiclink
            8. region d:130-297 [104652] picpiclink
          2. 1qya picpic
            Structural genomics target
            1. region a:1-129 [104653] picpiclink
            2. region a:130-297 [104654] picpiclink
            3. region b:1-129 [104655] picpiclink
            4. region b:130-297 [104656] picpiclink
          3. 1sdj picpic
            structural genomics; NESG target ET25
            complexed with so4
            1. region a:-10-129 [98807] picpiclink
            2. region a:130-299 [98808] picpiclink
      2. Hypothetical protein EF0119 [102852]
        1. Enterococcus faecalis [TaxId: 1351] [102853] (1)
          1. 1s7j picpic
            structural genomics
            1. chain a [98647] picpiclink
            2. chain b [98648] picpiclink
      3. Hypothetical protein PA4716 [110861]
        1. Pseudomonas aeruginosa [TaxId: 287] [110862] (1)
          SQ Q9HV82
          1. 1u0k picpic
            Structural genomics target
            1. region a:2-130 [107547] picpiclink
            2. region a:131-283 [107548] picpiclink
            3. region b:2-130 [107549] picpiclink
            4. region b:131-283 [107550] picpiclink
      4. Phenazine biosynthesis protein PhzF [117861]
        1. Pseudomonas fluorescens [TaxId: 294] [117862] (6)
          SQ Q51792
          1. 1xub picpic
            complexed with so4; mutant
            1. region a:1-128 [116060] picpiclink
            2. region a:129-278 [116061] picpiclink
          2. 1u1w picpic
            complexed with 3ha, act, gol
            1. region a:1-128 [112957] picpiclink
            2. region a:129-278 [112958] picpiclink
            3. region b:1-128 [112959] picpiclink
            4. region b:129-278 [112960] picpiclink
          3. 1u1v picpic
            complexed with gol, so4
            1. region a:1-128 [112955] picpiclink
            2. region a:129-278 [112956] picpiclink
          4. 1xua picpic
            complexed with hha
            1. region a:1-128 [116056] picpiclink
            2. region a:129-278 [116057] picpiclink
            3. region b:1-128 [116058] picpiclink
            4. region b:129-278 [116059] picpiclink
          5. 1u1x picpic
            complexed with hha
            1. region a:1-128 [112961] picpiclink
            2. region a:129-278 [112962] picpiclink
            3. region b:1-128 [112963] picpiclink
            4. region b:129-278 [112964] picpiclink
          6. 1t6k picpic
            complexed with so4
            1. region a:1-128 [112261] picpiclink
            2. region a:129-278 [112262] picpiclink
    3. Proline racemase [110863] (1)
      Pfam 05544
      1. Proline racemase [110864]
        1. Brucella melitensis [TaxId: 29459] [110865] (1)
          SQ Q8YFD6
          1. 1tm0 picpic
            Structural genomics target
            1. chain a [107147] picpiclink
            2. chain b [107148] picpiclink
    4. PA0793-like [160123] (1)
      Pfam 04303; DUF453
      1. Hypothetical protein PA0793 [160124]
        1. Pseudomonas aeruginosa [TaxId: 287] [160125] (2)
          SQ Q9I5E5 1-182! SQ Q9I5E5 187-395
          1. 2h9f picpic
            complexed with cl, co, gol, so4
            1. region a:1-182 [147248] picpiclink
          2. 2h9f picpic
            complexed with cl, co, gol, so4
            1. region a:187-395 [147249] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk