Structural Classification of Proteins
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Superfamily: Diaminopimelate epimerase-like

duplication: consists of two similar domain swapped with C-terminal strands
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a+b) [53931]
    Mainly antiparallel beta sheets (segregated alpha and beta regions)
  3. Fold: Diaminopimelate epimerase-like [54505]
    mixed beta-sheet folds into a barrel (n=8, S=14) around the central helix
  4. Superfamily: Diaminopimelate epimerase-like [54506]
    duplication: consists of two similar domain swapped with C-terminal strands
    link to SUPERFAMILY database - Superfamily

Families:

  1. Diaminopimelate epimerase [54507] (1)
    1. Diaminopimelate epimerase [54508]
      1. Haemophilus influenzae [TaxId: 727] [54509] (10)
        1. 2gke picpic
          automatically matched to d1bwza1
          complexed with acy, gol, zdp
          1. region a:1-130 [135329] picpiclink
        2. 2gke picpic
          automatically matched to d1bwza2
          complexed with acy, gol, zdp
          1. region a:131-274 [135330] picpiclink
        3. 2gkj picpic
          automatically matched to d1bwza1
          complexed with acy, zdr
          1. region a:1-130 [135331] picpiclink
        4. 2gkj picpic
          automatically matched to d1bwza2
          complexed with acy, zdr
          1. region a:131-274 [135332] picpiclink
        5. 1gqz picpic
          1. region a:1-130 [83311] picpiclink
          2. region a:131-274 [83312] picpiclink
        6. 2q9h picpic
          automatically matched to d1bwza1
          complexed with acy, tla; mutant
          1. region a:1-130 [150143] picpiclink
        7. 2q9h picpic
          automatically matched to d1bwza2
          complexed with acy, tla; mutant
          1. region a:131-274 [150144] picpiclink
        8. 2q9j picpic
          automatically matched to d1bwza1
          complexed with edo, so4; mutant
          1. region a:1-130 [150145] picpiclink
        9. 2q9j picpic
          automatically matched to d1bwza2
          complexed with edo, so4; mutant
          1. region a:131-274 [150146] picpiclink
        10. 1bwz picpic
          1. region a:1-130 [38337] picpiclink
          2. region a:131-274 [38338] picpiclink
  2. PhzC/PhzF-like [89863] (4)
    Pfam 02567
    1. Hypothetical protein YddE [89864]
      1. Escherichia coli [TaxId: 562] [89865] (3)
        SQ P37757
        structural genomics; NESG target ET25
        1. 1qy9 picpic
          Structural genomics target
          complexed with gol, hyd
          1. region a:3-129 [104645] picpiclink
          2. region a:130-297 [104646] picpiclink
          3. region b:3-129 [104647] picpiclink
          4. region b:130-297 [104648] picpiclink
          5. region c:2-129 [104649] picpiclink
          6. region c:130-297 [104650] picpiclink
          7. region d:1-129 [104651] picpiclink
          8. region d:130-297 [104652] picpiclink
        2. 1qya picpic
          Structural genomics target
          1. region a:1-129 [104653] picpiclink
          2. region a:130-297 [104654] picpiclink
          3. region b:1-129 [104655] picpiclink
          4. region b:130-297 [104656] picpiclink
        3. 1sdj picpic
          structural genomics; NESG target ET25
          complexed with so4
          1. region a:-10-129 [98807] picpiclink
          2. region a:130-299 [98808] picpiclink
    2. Hypothetical protein EF0119 [102852]
      1. Enterococcus faecalis [TaxId: 1351] [102853] (1)
        1. 1s7j picpic
          structural genomics
          1. chain a [98647] picpiclink
          2. chain b [98648] picpiclink
    3. Hypothetical protein PA4716 [110861]
      1. Pseudomonas aeruginosa [TaxId: 287] [110862] (1)
        SQ Q9HV82
        1. 1u0k picpic
          Structural genomics target
          1. region a:2-130 [107547] picpiclink
          2. region a:131-283 [107548] picpiclink
          3. region b:2-130 [107549] picpiclink
          4. region b:131-283 [107550] picpiclink
    4. Phenazine biosynthesis protein PhzF [117861]
      1. Pseudomonas fluorescens [TaxId: 294] [117862] (6)
        SQ Q51792
        1. 1xub picpic
          complexed with so4; mutant
          1. region a:1-128 [116060] picpiclink
          2. region a:129-278 [116061] picpiclink
        2. 1u1w picpic
          complexed with 3ha, act, gol
          1. region a:1-128 [112957] picpiclink
          2. region a:129-278 [112958] picpiclink
          3. region b:1-128 [112959] picpiclink
          4. region b:129-278 [112960] picpiclink
        3. 1u1v picpic
          complexed with gol, so4
          1. region a:1-128 [112955] picpiclink
          2. region a:129-278 [112956] picpiclink
        4. 1xua picpic
          complexed with hha
          1. region a:1-128 [116056] picpiclink
          2. region a:129-278 [116057] picpiclink
          3. region b:1-128 [116058] picpiclink
          4. region b:129-278 [116059] picpiclink
        5. 1u1x picpic
          complexed with hha
          1. region a:1-128 [112961] picpiclink
          2. region a:129-278 [112962] picpiclink
          3. region b:1-128 [112963] picpiclink
          4. region b:129-278 [112964] picpiclink
        6. 1t6k picpic
          complexed with so4
          1. region a:1-128 [112261] picpiclink
          2. region a:129-278 [112262] picpiclink
  3. Proline racemase [110863] (1)
    Pfam 05544
    1. Proline racemase [110864]
      1. Brucella melitensis [TaxId: 29459] [110865] (1)
        SQ Q8YFD6
        1. 1tm0 picpic
          Structural genomics target
          1. chain a [107147] picpiclink
          2. chain b [107148] picpiclink
  4. PA0793-like [160123] (1)
    Pfam 04303; DUF453
    1. Hypothetical protein PA0793 [160124]
      1. Pseudomonas aeruginosa [TaxId: 287] [160125] (2)
        SQ Q9I5E5 1-182! SQ Q9I5E5 187-395
        1. 2h9f picpic
          complexed with cl, co, gol, so4
          1. region a:1-182 [147248] picpiclink
        2. 2h9f picpic
          complexed with cl, co, gol, so4
          1. region a:187-395 [147249] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk