Family: Bacteriorhodopsin-like

Lineage:

1. Root: scop
2. Class: Membrane and cell surface proteins and peptides [56835]
   Does not include proteins in the immune system
3. Fold: Family A G protein-coupled receptor-like [81322]
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane
4. Superfamily: Family A G protein-coupled receptor-like [81321]
   uperfamily
5. Family: Bacteriorhodopsin-like [81319]

Protein Domains:

1. Bacteriorhodopsin [56871]
   a light-driven proton pump
   1. Archaeon Halobacterium halobium [TaxId: 2242] [56872] (3)
      1. 1bm1
         complexed with dpg, ret
         1. chain a [43402]
      2. 2brd
         complexed with dpg, ret
         1. chain a [43403]
      3. 1brd
         complexed with ret
         1. chain a [43404]
   2. Archaeon Halobacterium salinarum [TaxId: 2242] [56873] (60)
      SQ P02945 17-245
      1. 1m0k
         K intermediate
         complexed with li1, ret, squ
         1. chain a [78344]
      2. 1m0l
         complexed with li1, ret, squ
         1. chain a [78345]
      3. 1m0m
         M1 intermediate
         complexed with li1, ret, squ
         1. chain a [78346]
      4. 2ntu
         automatically matched to d1cwqa_
         complexed with ret
         1. region a:8-231 [138595]
      5. 2ntw
         automatically matched to d1cwqa_
         complexed with ret
         1. region a:8-231 [138596]
      6. 1c3w
         complexed with li1, ret, squ
         1. chain a [43405]
      7. 1p8h
         complexed with li1, ret, squ
         1. chain a [87944]
      8. 1f50
         complexed with li1, ret, squ; mutant
         1. chain a [43406]
      9. 1kgb
         complexed with li1, ret
         1. chain a [68581]
      10. 1o0a
          L intermediate
          complexed with li1, ret, squ
          1. chain a [86526]
      11. 1pxr
          complexed with ret; mutant
          1. chain a [95297]
          2. chain b [95298]
      12. 1c8r
          complexed with li1, ret, squ; mutant
          1. chain a [43407]
      13. 1f4z
          complexed with li1, ret, squ; mutant
          1. chain a [43408]
      14. 1p8u
          complexed with li1, ret, squ; mutant
          1. chain a [87983]
      15. 1kg9
          a "mock-trapped" early-M intermediate
          complexed with li1, ret
          1. chain a [68580]
      16. 1py6
          complexed with ret
          1. chain a [95327]
          2. chain b [95328]
      17. 1p8i
          complexed with li1, ret, squ; mutant
          1. chain a [87945]
      18. 1qhj
          complexed with ph1, ret
          1. chain a [43409]
      19. 1mgy
          complexed with br, k, li1, ret; mutant
          1. chain a [84959]
      20. 1jv6
          complexed with li1, ret; mutant
          1. chain a [67346]
      21. 1kg8
          an early-M intermediate
          complexed with li1, ret
          1. chain a [68579]
      22. 1s53
          complexed with ret; mutant
          1. chain a [98521]
          2. chain b [98522]
      23. 1s51
          complexed with ret; mutant
          1. chain a [98517]
          2. chain b [98518]
      24. 1kme
          complexed with glc, ret, squ
          1. chain a [68692]
          2. chain b [68693]
      25. 1qkp
          complexed with ret
          1. chain a [43411]
      26. 1q5j
          complexed with ret; mutant
          1. chain a [95898]
          2. chain b [95899]
      27. 1xji
          automatically matched to d1cwqa_
          complexed with c14, cps, d10, d12, oct, ret
          1. region a:8-230 [122034]
      28. 1pxs
          complexed with ret; mutant
          1. chain a [95299]
          2. chain b [95300]
      29. 1s8j
          complexed with li1, no3, ret; mutant
          1. chain a [105372]
      30. 1s8l
          complexed with li1, ret; mutant
          1. chain a [105373]
      31. 1q5i
          complexed with ret; mutant
          1. chain a [95896]
          2. chain b [95897]
      32. 1jv7
          complexed with li1, ret; mutant
          1. chain a [67347]
      33. 1cwq
          M intermediate structure (A) superimposed on the ground state structure (B)
          complexed with hex, oct, ret, trd, und
          1. chain a [43412]
          2. chain b [43413]
      34. 1qko
          complexed with ret
          1. chain a [43414]
      35. 1s54
          complexed with ret; mutant
          1. chain a [98523]
          2. chain b [98524]
      36. 1e0p
          L intermediate
          complexed with ret
          1. chain a [43416]
          2. chain b [43417]
      37. 1s52
          complexed with ret; mutant
          1. chain a [98519]
          2. chain b [98520]
      38. 1c8s
          complexed with li1, ret, squ; mutant
          1. chain a [43410]
      39. 1tn0
          complexed with ret; mutant
          1. chain a [112523]
          2. chain b [112524]
      40. 1tn5
          complexed with ret; mutant
          1. chain a [112525]
          2. chain b [112526]
      41. 1x0i
          automatically matched to d1cwqa_
          complexed with l2p, l3p, ret, so4
          1. region 1:8-233 [121548]
      42. 1iw6
          ground state
          complexed with gal, glc, l2p, l3p, man, ret
          1. chain a [76865]
      43. 1vjm
          complexed with ret
          1. chain a [100824]
      44. 1iw9
          complexed with gal, glc, l2p, l3p, man, ret
          1. chain a [90711]
      45. 1brx
          complexed with ret
          1. chain a [43415]
      46. 1dze
          M intermediate trapped at 100K
          complexed with gal, glc, l1p, l2p, l3p, l4p, man, ret
          1. chain a [43419]
      47. 1x0s
          automatically matched to d1cwqa_
          complexed with gal, glc, l2p, l3p, man, ret, so4
          1. region a:8-231 [121572]
      48. 1ucq
          complexed with gal, glc, l2p, l3p, man, ret
          1. chain a [99187]
      49. 1x0k
          automatically matched to d1cwqa_
          complexed with gal, glc, l2p, l3p, man, ret
          1. region 1:8-231 [121549]
      50. 1qm8
          complexed with gal, glc, l1p, l2p, l3p, l4p, man, ret
          1. chain a [43420]
      51. 1ixf
          K intermediate
          complexed with gal, glc, l2p, l3p, man, ret
          1. chain a [76908]
      52. 1ap9
          complexed with ret
          1. chain a [43418]
      53. 1brr
          complexed with arc, gas, glc, man, oct, ret
          1. chain a [43421]
          2. chain b [43422]
          3. chain c [43423]
      54. 1fbb
          complexed with ret
          1. chain a [43425]
      55. 1fbk
          complexed with ret; mutant
          1. chain a [43426]
      56. 1at9
          complexed with ret
          1. chain a [43424]
      57. 1r84
          complexed with ret
          1. chain a [97218]
      58. 1r2n
          complexed with ret
          1. chain a [96873]
      59. 2at9
          complexed with 2dp, ret
          1. chain a [43427]
      60. 1l0m
          a solution structure
          mutant
          1. chain a [73402]
2. Archaerhodopsin-1 [90105]
   1. Archaeon Halobacterium sp. [TaxId: 2243] [90106] (1)
      1. 1uaz
         complexed with ret
         1. chain a [88392]
         2. chain b [88393]
3. Halorhodopsin [56874]
   a light-driven chloride pump
   1. Archaeon Halobacterium salinarum [TaxId: 2242] [56875] (1)
      1. 1e12
         complexed with cl, k, mpg, plm, ret; mutant
         1. chain a [43428]
4. Sensory rhodopsin II [64526]
   1. Archaeon Natronobacterium pharaonis [TaxId: 2257] [64527] (7)
      1. 1h2s
         complexed with bog, ret
         1. chain a [76578]
      2. 2f93
         automatically matched to d1h2sa_
         complexed with bog, ret
         1. region a:3-222 [133151]
      3. 1h68
         complexed with cl, ret
         1. region a:2-218 [118486]
      4. 2f95
         automatically matched to d1h2sa_
         complexed with bog, ret
         1. region a:3-222 [133152]
      5. 1gu8
         complexed with cl, ret
         1. chain a [70579]
         2. chain b [70580]
      6. 1gue
         complexed with cl, ret
         1. chain a [70581]
      7. 1jgj
         complexed with bog, ret
         1. chain a [62952]
5. Sensory rhodopsin [118224]
   1. Anabaena sp. PCC 7120 [TaxId: 103690] [118225] (1)
      SQ Q8YSC4 # alr3165
      1. 1xio
         complexed with pee, ret
         1. chain a [115359]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk