Structural Classification of Proteins
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Family: LIM domain

duplication: contains two (sub)domains of this fold

Lineage:

  1. Root: scop
  2. Class: Small proteins [56992]
    Usually dominated by metal ligand, heme, and/or disulfide bridges
  3. Fold: Glucocorticoid receptor-like (DNA-binding domain) [57715]
    alpha+beta metal(zinc)-bound fold
  4. Superfamily: Glucocorticoid receptor-like (DNA-binding domain) [57716]
    link to SUPERFAMILY database - Superfamily
  5. Family: LIM domain [57736]
    duplication: contains two (sub)domains of this fold

Protein Domains:

  1. Cysteine-rich (intestinal) protein, CRP, CRIP [57737]
    1. Chicken (Gallus gallus) [TaxId: 9031] [57738] (2)
      1. 1b8t picpic
        complexed with zn
        1. region a:1-35 [45135] picpiclink
        2. region a:36-100 [45136] picpiclink
        3. region a:101-143 [45137] picpiclink
        4. region a:144-192 [45138] picpiclink
      2. 1ctl picpic
        complexed with zn
        1. region a:1-35 [45133] picpiclink
        2. region a:36-85 [45134] picpiclink
    2. Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934] [57739] (4)
      1. 1ibi picpic
        complexed with zn
        1. region a:117-144 [62160] picpiclink
        2. region a:145-175 [62161] picpiclink
      2. 1cxx picpic
        complexed with zn; mutant
        1. region a:117-144 [45139] picpiclink
        2. region a:145-175 [45140] picpiclink
      3. 1a7i picpic
        complexed with zn
        1. region a:8-35 [45143] picpiclink
        2. region a:36-67 [45144] picpiclink
      4. 1qli picpic
        complexed with zn
        1. region a:117-144 [45141] picpiclink
        2. region a:145-175 [45142] picpiclink
    3. Rat (Rattus rattus) [TaxId: 10117] [57740] (1)
      1. 1iml picpic
        complexed with zn
        1. region a:1-28 [45145] picpiclink
        2. region a:29-76 [45146] picpiclink
    4. Human (Homo sapiens) [TaxId: 9606] [144160] (2)
      SQ P52943 1-30! SQ P52943 31-63
      CRP2
      1. 2cu8 picpic
        complexed with zn
        1. region a:8-37 [130806] picpiclink
      2. 2cu8 picpic
        complexed with zn
        1. region a:38-70 [130807] picpiclink
  2. Pinch (particularly interesting new Cys-His) protein [57741]
    1. Human (Homo sapiens) [TaxId: 9606] [57742] (8)
      1. 1u5s picpicxref
        automatically matched to d1nypa1
        complexed with zn
        1. region b:72-102 [119551] picpiclink
      2. 1u5s picpicxref
        automatically matched to d1nypa2
        complexed with zn
        1. region b:103-137 [119552] picpiclink
      3. 2d8x picpic
        2nd LIM domain
        complexed with zn
        1. region a:33-64 [131337] picpiclink
      4. 2d8x picpic
        2nd LIM domain
        complexed with zn
        1. region a:8-32 [131338] picpiclink
      5. 2cor picpic
        3rd LIM domain
        complexed with zn
        1. region a:43-73 [130681] picpiclink
      6. 2cor picpic
        3rd LIM domain
        complexed with zn
        1. region a:8-42 [130682] picpiclink
      7. 1nyp picpic
        fourth LIM domain
        complexed with zn
        1. region a:1-31 [86411] picpiclink
        2. region a:32-66 [86412] picpiclink
      8. 1g47 picpic
        first LIM domain
        complexed with zn
        1. region a:1-35 [45147] picpiclink
        2. region a:36-70 [45148] picpiclink
  3. Rhombotin-2 (Lmo2) [90203]
    1. Mouse (Mus musculus) [TaxId: 10090] [90204] (1)
      1. 1j2o picpic
        fusion of the first LIM domain with a fragment of LIM domain binding protein 1, LMBP1, residues 75-114, connected with a linker, res. 64-74
        complexed with zn
        1. region a:1-30 [84020] picpiclink
        2. region a:31-63 [84021] picpiclink
  4. LIM only 4 (Lmo4) [90205]
    1. Mouse (Mus musculus) [TaxId: 10090] [90206] (2)
      SQ P61969 19-152
      1. 1rut picpic
        fusion protein with the LIM domain-binding protein 1 region (SQ P70662 300-327)
        complexed with zn; mutant
        1. region x:19-48 [111939] picpiclink
        2. region x:49-82 [111940] picpiclink
        3. region x:83-113 [111941] picpiclink
        4. region x:114-146 [111942] picpiclink
      2. 1m3v picpic
        fusion of the first LIM domain with a fragment of LIM domain binding protein 1, LMBP1, residues 83-122, connected with a linker, res. 72-82
        complexed with zn; mutant
        1. region a:1-32 [84794] picpiclink
        2. region a:33-71 [84795] picpiclink
  5. Actin-binding LIM protein 2, abLIM2 [111441]
    1. Human (Homo sapiens) [TaxId: 9606] [111442] (2)
      SQ Q6H8Q1 73-140, 212-271
      1. 1v6g picpic
        Structural genomics target
        complexed with zn
        1. region a:1-41 [108396] picpiclink
        2. region a:42-81 [108397] picpiclink
      2. 1wig picpic
        Structural genomics target; 1st LIM domain
        complexed with zn
        1. region a:1-32 [114670] picpiclink
        2. region a:33-73 [114671] picpiclink
  6. Four and a half LIM domains protein 2, FHL2 [144161]
    Skeletal muscle lim-protein 3
    1. Human (Homo sapiens) [TaxId: 9606] [144162] (6)
      SQ Q14192 128-159! SQ Q14192 162-186! SQ Q14192 187-218! SQ Q14192 221-249! SQ Q14192 250-279! SQ Q14192 98-127
      1. 1x4k picpic
        2nd LIM domain
        complexed with zn
        1. region a:35-66 [121691] picpiclink
      2. 1x4k picpic
        2nd LIM domain
        complexed with zn
        1. region a:8-34 [121692] picpiclink
      3. 2d8z picpic
        3rd LIM domain
        complexed with zn
        1. region a:8-32 [131341] picpiclink
      4. 2d8z picpic
        3rd LIM domain
        complexed with zn
        1. region a:33-64 [131342] picpiclink
      5. 1x4l picpic
        4th LIM domain
        complexed with zn
        1. region a:8-36 [121693] picpiclink
      6. 1x4l picpic
        4th LIM domain
        complexed with zn
        1. region a:37-66 [121694] picpiclink
  7. Four and a half LIM domains protein 1, FHL-1 [144163]
    Skeletal muscle lim-protein 1
    1. Human (Homo sapiens) [TaxId: 9606] [144164] (7)
      SQ Q13642 128-159! SQ Q13642 161-185! SQ Q13642 186-216! SQ Q13642 39-66! SQ Q13642 67-97! SQ Q13642 90-127! SQ Q13642 98-127
      1. 2cur picpic
        complexed with zn
        1. region a:33-63 [130820] picpiclink
      2. 2cur picpic
        complexed with zn
        1. region a:8-32 [130821] picpiclink
      3. 1x63 picpic
        complexed with zn
        1. region a:8-44 [121731] picpiclink
      4. 1x63 picpic
        complexed with zn
        1. region a:45-76 [121732] picpiclink
      5. 2cup picpic
        complexed with zn
        1. region a:66-95 [130815] picpiclink
      6. 2cup picpic
        complexed with zn
        1. region a:35-65 [130816] picpiclink
      7. 2cup picpic
        complexed with zn
        1. region a:8-34 [130817] picpiclink
  8. Eplin, LIMA1 [144165]
    Epithelial protein lost in neoplasm
    1. Human (Homo sapiens) [TaxId: 9606] [144166] (2)
      SQ Q9UHB6 381-417! SQ Q9UHB6 416-457
      1. 2d8y picpic
        complexed with zn
        1. region a:9-43 [131339] picpiclink
      2. 2d8y picpic
        complexed with zn
        1. region a:44-85 [131340] picpiclink
  9. Four and a half LIM domains 3, FHL3 [144167]
    Skeletal muscle lim-protein 2
    1. Human (Homo sapiens) [TaxId: 9606] [144168] (4)
      SQ Q13643 127-159! SQ Q13643 152-186! SQ Q13643 187-218! SQ Q13643 98-126
      1. 2cuq picpic
        complexed with zn
        1. region a:43-74 [130818] picpiclink
      2. 2cuq picpic
        complexed with zn
        1. region a:8-42 [130819] picpiclink
      3. 1wyh picpic
        complexed with zn
        1. region a:35-66 [121444] picpiclink
      4. 1wyh picpic
        complexed with zn
        1. region a:8-34 [121445] picpiclink
  10. PDZ and LIM domain protein 5, Enigma [144169]
    1. Human (Homo sapiens) [TaxId: 9606] [144170] (2)
      SQ Q96HC4 400-444! SQ Q96HC4 445-476
      1. 2dar picpic
        complexed with zn
        1. region a:53-84 [131355] picpiclink
      2. 2dar picpic
        complexed with zn
        1. region a:8-52 [131356] picpiclink
  11. PDZ and LIM domain protein 1 Elfin [144171]
    C-terminal LIM domain protein 1
    1. Human (Homo sapiens) [TaxId: 9606] [144172] (2)
      SQ O00151 249-279! SQ O00151 280-314
      1. 1x62 picpic
        complexed with zn
        1. region a:43-73 [121729] picpiclink
      2. 1x62 picpic
        complexed with zn
        1. region a:8-42 [121730] picpiclink
  12. Nedd9 interacting protein with calponin homology, NICAL (MICAL1) [144173]
    1. Human (Homo sapiens) [TaxId: 9606] [144174] (2)
      SQ Q8TDZ2 687-722! SQ Q8TDZ2 723-755
      1. 2co8 picpic
        complexed with zn
        1. region a:44-76 [130670] picpiclink
      2. 2co8 picpic
        complexed with zn
        1. region a:8-43 [130671] picpiclink
  13. Leupaxin [144175]
    1. Human (Homo sapiens) [TaxId: 9606] [144176] (2)
      SQ O60711 260-295! SQ O60711 296-327
      1. 1x3h picpic
        complexed with zn
        1. region a:8-42 [121662] picpiclink
      2. 1x3h picpic
        complexed with zn
        1. region a:43-74 [121663] picpiclink
  14. Thyroid receptor interacting protein 6, TRIP6 [144177]
    1. Human (Homo sapiens) [TaxId: 9606] [144178] (4)
      SQ Q15654 279-305! SQ Q15654 306-337! SQ Q15654 363-396! SQ Q15654 364-396
      1. 1x61 picpic
        1st LIM domain
        complexed with zn
        1. region a:8-34 [121727] picpiclink
      2. 1x61 picpic
        1st LIM domain
        complexed with zn
        1. region a:35-66 [121728] picpiclink
      3. 2dlo picpic
        2nd LIM domain
        complexed with zn
        1. region a:8-42 [131560] picpiclink
      4. 2dlo picpic
        2nd LIM domain
        complexed with zn
        1. region a:43-75 [131561] picpiclink
  15. Actin-binding LIM protein 3, abLIM-3 [144179]
    1. Human (Homo sapiens) [TaxId: 9606] [144180] (2)
      SQ O94929 141-176! SQ O94929 177-207
      1. 2dj7 picpic
        complexed with zn
        1. region a:44-74 [131538] picpiclink
      2. 2dj7 picpic
        complexed with zn
        1. region a:8-43 [131539] picpiclink
  16. Four and a half LIM domains protein 5, FHL-5 [144181]
    1. Human (Homo sapiens) [TaxId: 9606] [144182] (2)
      SQ Q5TD97 222-250! SQ Q5TD97 251-284
      1. 1x68 picpic
        complexed with zn
        1. region a:8-36 [121735] picpiclink
      2. 1x68 picpic
        complexed with zn
        1. region a:37-70 [121736] picpiclink
  17. Lim domain kinase 2 [144183]
    1. Human (Homo sapiens) [TaxId: 9606] [144184] (2)
      SQ P53671 62-95! SQ P53671 96-129
      1. 1x6a picpic
        complexed with zn
        1. region a:8-41 [121737] picpiclink
      2. 1x6a picpic
        complexed with zn
        1. region a:42-75 [121738] picpiclink
  18. PDZ and LIM domain protein 3, PDLIM3 [144185]
    Alpha-actinin-2-associated LIM protein
    1. Mouse (Mus musculus) [TaxId: 10090] [144186] (2)
      SQ O70209 270-301! SQ O70209 271-301
      1. 1x64 picpic
        complexed with zn
        1. region a:8-52 [121733] picpiclink
      2. 1x64 picpic
        complexed with zn
        1. region a:53-83 [121734] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk