Superfamily: RNA polymerase subunits

uperfamily

Lineage:

1. Root: scop
2. Class: Small proteins [56992]
   Usually dominated by metal ligand, heme, and/or disulfide bridges
3. Fold: Rubredoxin-like [57769]
   metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
4. Superfamily: RNA polymerase subunits [63393]
   uperfamily

Families:

1. RBP12 subunit of RNA polymerase II [64576] (1)
   1. RBP12 subunit of RNA polymerase II [64577]
      1. Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] [64578] (30)
         SQ P40422; part of multichain biological unit
         1. 1twf
            complexed with mn, utp, zn
            1. chain l [112737]
         2. 1i50
            complexed with mn, zn
            1. chain l [61766]
         3. 1k83
            complexed with ilx, mn, trx, zn
            1. chain l [68287]
         4. 3cqz
            automatically matched to d1i3ql_
            complexed with ilx, trx, zn
            1. region l:26-70 [156935]
         5. 1i3q
            complexed with mg, zn
            1. chain l [61619]
         6. 2nvq
            automatically matched to d1i3ql_
            complexed with dut, mg, zn
            1. region l:25-70 [138646]
         7. 1twc
            complexed with gtp, mn, zn
            1. chain l [112723]
         8. 1twa
            complexed with atp, mn, zn
            1. chain l [112708]
         9. 1i6h
            complexed with mg, zn
            1. chain l [61843]
         10. 1twh
             complexed with atp, mn, zn
             1. chain l [112763]
         11. 2r7z
             automatically matched to d1i3ql_
             complexed with cpt, mg, zn
             1. region l:25-70 [151666]
         12. 2r92
             automatically matched to d1i3ql_
             complexed with mg, zn
             1. region l:25-70 [151753]
         13. 1twg
             complexed with ctp, mn, zn
             1. chain l [112750]
         14. 2nvy
             automatically matched to d1i3ql_
             complexed with mn, zn
             1. region l:25-70 [138692]
         15. 2r93
             automatically matched to d1i3ql_
             complexed with mg, zn
             1. region l:25-70 [151762]
         16. 2e2i
             automatically matched to d1i3ql_
             complexed with dgt, mg, zn
             1. region l:25-70 [132006]
         17. 2vum
             automatically matched to d1i3ql_
             complexed with bru, ilx, mg, trx, zn
             1. region l:25-70 [153556]
         18. 2e2j
             automatically matched to d1i3ql_
             complexed with g2p, mg, zn
             1. region l:25-70 [132019]
         19. 2b63
             automatically matched to d1i3ql_
             complexed with 5bu, mg, zn
             1. region l:25-70 [127931]
         20. 2ja7
             automatically matched to d1i3ql_
             complexed with bru, mg, tt, zn
             1. region l:25-70 [138205]
         21. 2ja7
             automatically matched to d1i3ql_
             complexed with bru, mg, tt, zn
             1. region x:25-70 [138221]
         22. 2nvx
             automatically matched to d1i3ql_
             complexed with dut, mg, zn
             1. region l:25-70 [138679]
         23. 2nvt
             automatically matched to d1i3ql_
             complexed with g2p, mg, zn
             1. region l:25-70 [138659]
         24. 2ja5
             automatically matched to d1i3ql_
             complexed with bru, mg, zn
             1. region l:25-70 [138173]
         25. 2ja8
             automatically matched to d1i3ql_
             complexed with bru, mg, tt, zn
             1. region l:25-70 [138237]
         26. 2b8k
             automatically matched to d1i3ql_
             complexed with zn
             1. region l:25-70 [128091]
         27. 2ja6
             automatically matched to d1i3ql_
             complexed with bru, mg, tt, zn
             1. region l:25-70 [138189]
         28. 2yu9
             automatically matched to d1i3ql_
             complexed with mg, utp, zn
             1. region l:25-70 [140076]
         29. 2e2h
             automatically matched to d1i3ql_
             complexed with gtp, mg, zn
             1. region l:25-70 [131993]
         30. 2nvz
             automatically matched to d1i3ql_
             complexed with mg, utp, zn
             1. region l:25-70 [138705]
2. RpoE2-like [111454] (1)
   Pfam 04035
   1. putative DNA-directed RNA polymerase subunit E'' (RpoE2) [111455]
      1. Pyrococcus furiosus [TaxId: 2261] [111456] (1)
         SQ Q8U440
         1. 1ryq
            Structural genomics target
            complexed with zn
            1. chain a [105126]

Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009 Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk