Structural Classification of Proteins
Family: monodomain cytochrome c
Lineage:
Root:
scop
Class:
All alpha proteins
[46456]
Fold:
Cytochrome c
[46625]
core: 3 helices; folded leaf, opened
Superfamily:
Cytochrome c
[46626]
covalently-bound heme completes the core
uperfamily
Family:
monodomain cytochrome c
[46627]
Protein Domains:
Cytochrome c6 (synonym: cytochrome c553) [46628]
Bacillus pasteurii
[TaxId: 1474]
[46629] (5)
1c75
complexed with hem
chain a
[15796]
1b7v
complexed with hem
chain a
[15797]
1k3h
complexed with hec
chain a
[68112]
1k3g
complexed with hec
chain a
[68111]
1n9c
complexed with hec
chain a
[80340]
Monoraphidium braunii
[TaxId: 34112]
[46630] (3)
1ctj
complexed with hem
chain a
[15798]
1ced
complexed with hem
chain a
[15799]
1a2s
complexed with hec
chain a
[15800]
Desulfovibrio vulgaris, different strains
[TaxId: 881]
[46631] (2)
1c53
complexed with hem
chain a
[15801]
1dvh
complexed with hem
chain a
[15802]
Desulfovibrio desulfuricans
[TaxId: 876]
[46632] (1)
2dvh
complexed with hec; mutant
chain a
[15803]
Chlamydomonas reinhardtii
[TaxId: 3055]
[46633] (2)
1cyj
complexed with cd, hem
chain a
[15805]
1cyi
complexed with cd, hem
chain a
[15804]
Cyanobacterium (Synechococcus elongatus)
[TaxId: 32046]
[46634] (1)
1c6s
complexed with hec
chain a
[15806]
Arthrospira maxima
[TaxId: 129910]
[63457] (2)
1f1f
complexed with hem
chain a
[59571]
1kib
complexed with hem
chain a
[72502]
chain b
[72503]
chain c
[72504]
chain d
[72505]
chain e
[72506]
chain f
[72507]
chain g
[72508]
chain h
[72509]
Green alga (Scenedesmus obliquus)
[TaxId: 3088]
[46635] (2)
1c6r
complexed with cd, hem
chain a
[15807]
1c6o
complexed with hem
chain a
[15808]
chain b
[15809]
Red alga (Porphyra yezoensis)
[TaxId: 2788]
[63458] (1)
1gdv
complexed with hem
chain a
[60458]
Green alga (Cladophora glomerata)
[TaxId: 162068]
[81674] (1)
1ls9
complexed with hem
chain a
[78177]
Cytochrome c552 [46636]
Thermus thermophilus
[TaxId: 274]
[46637] (6)
SQ
P04164
1c52
complexed with hem
chain a
[15810]
1qyz
complexed with hco
chain a
[104662]
1r0q
complexed with hfm
chain a
[104755]
1dt1
chain a
[15811]
2fwl
automatically matched to d1c52__
complexed with cua, hec
region a:3-131
[134247]
1foc
Cytochrome c557: improperly folded c552
complexed with hem
chain a
[15812]
chain b
[15813]
Pseudomonas nautica
[TaxId: 2743]
[46638] (1)
1cno
complexed with gol, hec
chain a
[15814]
chain b
[15815]
chain c
[15816]
chain d
[15817]
chain e
[15818]
chain f
[15819]
chain g
[15820]
chain h
[15821]
Paracoccus denitrificans
[TaxId: 266]
[46639] (5)
1ql3
chain a
[15822]
chain b
[15823]
chain c
[15824]
chain d
[15825]
1ql4
chain a
[15826]
chain b
[15827]
chain c
[15828]
chain d
[15829]
1i6d
complexed with hec
chain a
[66038]
1i6e
complexed with hec
chain a
[66039]
1c7m
complexed with hec
chain a
[15830]
Hydrogenobacter thermophilus
[TaxId: 940]
[46640] (6)
1ynr
automatically matched to d1ayg__
complexed with hec, mpd, so4
region a:1-80
[123750]
1ynr
automatically matched to d1ayg__
complexed with hec, mpd, so4
region b:1-79
[123751]
1ynr
automatically matched to d1ayg__
complexed with hec, mpd, so4
region c:1-80
[123752]
1ynr
automatically matched to d1ayg__
complexed with hec, mpd, so4
region d:1-79
[123753]
2ai5
automatically matched to d1ayg__
complexed with hec
region a:1-80
[126817]
1ayg
complexed with hec
chain a
[15831]
Nitrosomonas europaea
[TaxId: 915]
[46641] (2)
1a56
complexed with hec
chain a
[15832]
1a8c
complexed with hec
chain a
[15833]
Photosystem II associated cytochrome c549 [63459]
Synechocystis sp., pcc 6803
[TaxId: 1143]
[63460] (1)
1e29
complexed with ca, hec
chain a
[59161]
Arthrospira maxima
[TaxId: 129910]
[63461] (1)
1f1c
complexed with hem
chain a
[59569]
chain b
[59570]
Cytochrome c550 [100991]
Thermosynechococcus elongatus
[TaxId: 146786]
[100992] (2)
1mz4
complexed with bct, gol, hem, po4
chain a
[91496]
2axt
automatically matched to d1mz4a_
complexed with bcr, bct, ca, cla, dgd, fe2, hem, lhg, lmt, mge, oec, pho, pq9, sqd
region v:27-157
[127499]
Mitochondrial cytochrome c [46642]
Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]
[46643] (45)
SQ
P00044
1ycc
complexed with hem, so4, tml
chain a
[15834]
1ytc
complexed with hem, so4, tml; mutant
chain a
[15835]
1s6v
complexed with hem, iod; mutant
chain b
[98610]
chain d
[98612]
2bcn
automatically matched to d1u74b_
complexed with hem, znh; mutant
region b:1-108
[128300]
1cih
complexed with hem, so4, tml; mutant
chain a
[15836]
1csu
complexed with hem, so4, tml; mutant
chain a
[15837]
1cie
complexed with hem, so4, tml; mutant
chain a
[15838]
1cig
complexed with hem, so4, tml; mutant
chain a
[15840]
1csw
complexed with hem, so4, tml; mutant
chain a
[15839]
1yeb
complexed with hem, so4, tml
chain a
[15843]
1raq
complexed with hem, so4, tml; mutant
chain a
[15844]
1csx
complexed with hem, so4, tml; mutant
chain a
[15841]
1csv
complexed with hem, so4, tml; mutant
chain a
[15850]
1crj
complexed with hem, so4, tml; mutant
chain a
[15842]
1cri
complexed with hem, so4, tml; mutant
chain a
[15847]
1chi
complexed with hem, so4, tml; mutant
chain a
[15848]
1cif
complexed with hem, so4, tml; mutant
chain a
[15846]
1chj
complexed with hem, so4, tml; mutant
chain a
[15851]
1yea
complexed with hem, so4, tml
chain a
[15845]
1chh
complexed with hem, so4, tml; mutant
chain a
[15852]
1crh
complexed with hem, so4, tml; mutant
chain a
[15849]
1irw
complexed with hem, m3l, so4; mutant
chain a
[15855]
1crg
complexed with hem, so4, tml; mutant
chain a
[15854]
1ctz
complexed with hem, so4, tml; mutant
chain a
[15853]
2ycc
complexed with hem, so4, tml; mutant
chain a
[15856]
2pcc
complexed with hem, sul
chain b
[15860]
chain d
[15861]
1rap
complexed with hem, so4, tml; mutant
chain a
[15858]
1cty
complexed with hem, so4, tml; mutant
chain a
[15859]
2b11
complexed with hem, znh; mutant
region b:296-403
[144945]
2b11
automatically matched to 2B11 B:296-403
complexed with hem, znh; mutant
region d:796-903
[144946]
1irv
complexed with hem, m3l, so4; mutant
chain a
[15857]
1u74
complexed with hem, po4, znh; mutant
chain b
[107705]
chain d
[107707]
1kyo
complexed with fes, hem, m3l, sma
chain w
[73279]
2b10
complexed with hem, znh
region b:-4-103
[144943]
2b10
automatically matched to 2B10 B:-4-103
complexed with hem, znh
region d:-4-103
[144944]
2b0z
complexed with hem, znh; mutant
region b:-4-103
[144942]
2b12
complexed with hem, znh; mutant
region b:-4-103
[144947]
1fhb
complexed with cyn, hem, tml; mutant
chain a
[15862]
2hv4
automatically matched to d1nmia_
complexed with hec; mutant
region a:-5-103
[136782]
2gb8
automatically matched to d1kyow_
complexed with hec, hem
region b:1-103
[134910]
2orl
automatically matched to d1nmia_
complexed with 4nl, hec; mutant
region a:-5-103
[139273]
1yic
complexed with hec, m3l; mutant
chain a
[15863]
1yfc
complexed with hec, m3l; mutant
chain a
[15864]
1nmi
complexed with hec, imd
chain a
[80659]
1lms
complexed with hec; mutant
chain a
[84633]
Horse (Equus caballus)
[TaxId: 9796]
[46644] (16)
SQ
P00004
1wej
complexed with ace, hem, zn
chain f
[15865]
1hrc
complexed with hem
chain a
[15866]
1crc
complexed with hem
chain a
[15867]
chain b
[15868]
1u75
complexed with hem, po4, znh
chain b
[107709]
2pcb
complexed with hem
chain b
[15869]
1m60
zinc-substituted
complexed with hes
chain a
[74519]
1i5t
complexed with cn, hec
chain a
[61823]
1fi9
imidazole complex
complexed with hec, imd
chain a
[15870]
1lc2
complexed with hec
chain a
[84579]
1lc1
complexed with hec
chain a
[84578]
1giw
complexed with hec
chain a
[15874]
2giw
complexed with hec
chain a
[15875]
1akk
complexed with hec
chain a
[15873]
1fi7
imidazole complex
complexed with hec, imd
chain a
[15872]
2frc
complexed with hec
chain a
[15876]
1ocd
complexed with hec
chain a
[15871]
Rice embryos (Oryza sativa)
[TaxId: 4530]
[46645] (1)
1ccr
complexed with hem, tml
chain a
[15877]
Bluefin tuna (Thunnus thynnus)
[TaxId: 8237]
[46646] (5)
identical sequence to Thunnus alalunga, TaxId: 8235
1lfm
complexed with coh
chain a
[73883]
chain b
[73884]
5cyt
complexed with hem
chain r
[15878]
1i54
complexed with hem, znh
chain a
[61768]
chain b
[61769]
1i55
complexed with hem, znh
chain a
[61770]
chain b
[61771]
3cyt
complexed with hem
chain o
[15879]
chain i
[15880]
Bonito (Katsuwonus pelamis)
[TaxId: 8226]
[46647] (2)
1cyc
complexed with hem
chain a
[15881]
1cyc
duplicate of 1CYC
complexed with hem
chain b
[118450]
Human (Homo sapiens)
[TaxId: 9606]
[109644] (1)
SQ
P99999
1j3s
complexed with hec
chain a
[103838]
Cytochrome ch [46648]
Methylobacterium extorquens
[TaxId: 408]
[46649] (1)
1qn2
complexed with hec
chain a
[15882]
chain b
[15883]
chain c
[15884]
Cytochrome c2 [46650]
Rhodospirillum rubrum
[TaxId: 1085]
[46651] (2)
3c2c
complexed with hem
chain a
[15885]
2c2c
complexed with hem
chain a
[15886]
Rhodobacter capsulatus
[TaxId: 1061]
[46652] (3)
SQ
P00094
1vyd
complexed with hem; mutant
chain a
[108900]
chain b
[108901]
1c2r
complexed with hem
chain a
[15887]
chain b
[15888]
1c2n
complexed with hec
chain a
[15889]
Rhodobacter sphaeroides
[TaxId: 1063]
[46653] (5)
1cxc
complexed with hem
chain a
[15890]
2cxb
complexed with hem
chain a
[15891]
chain b
[15892]
1cxa
complexed with hem, imd
chain a
[15893]
1l9b
complexed with bcl, bph, cl, fe2, hem, hto, lda, na, u10
chain c
[73711]
1l9j
complexed with bcl, bph, cl, fe2, hem, lda, u10
chain c
[73722]
chain d
[73723]
Rhodopseudomonas viridis
[TaxId: 1079]
[46654] (3)
1co6
complexed with hem
chain a
[15894]
1io3
complexed with hem
chain a
[62613]
1cry
complexed with hem
chain a
[15895]
Rhodopseudomonas palustris
[TaxId: 1076]
[46655] (4)
1i8o
complexed with hec, nh3, sul
chain a
[61979]
1hh7
complexed with hec, nh3, so4
chain a
[15896]
1fj0
complexed with gol, hem, so4
chain a
[65011]
chain b
[65012]
chain c
[65013]
chain d
[65014]
1i8p
complexed with hec
chain a
[61980]
chain b
[61981]
chain c
[61982]
chain d
[61983]
Rhodopila globiformis
[TaxId: 1071]
[46656] (1)
1hro
complexed with hem
chain a
[15897]
chain b
[15898]
Paracoccus denitrificans
[TaxId: 266]
[46657] (2)
1cot
complexed with hem
chain a
[15899]
155c
complexed with hem
chain a
[15900]
Rhodospirillum centenum
[TaxId: 34018]
[68947] (1)
1jdl
complexed with hem
chain a
[66557]
Mono-heme c-type cytochrome SoxX [81675]
Rhodovulum sulfidophilum
[TaxId: 35806]
[81676] (7)
1h32
complexed with css, edo, hec
chain b
[76620]
1h33
complexed with css, hec
chain b
[76623]
2oz1
automatically matched to d1h31b_
complexed with hec
region b:1-137
[149087]
2oz1
automatically matched to d1h31b_
complexed with hec
region d:1-137
[149090]
2oz1
automatically matched to d1h31b_
complexed with hec
region f:1-137
[149093]
2oz1
automatically matched to d1h31b_
complexed with hec
region h:1-137
[149096]
1h31
complexed with css, hec
chain b
[76608]
chain d
[76611]
chain f
[76614]
chain h
[76617]
Cytochrome c5 [46658]
Azotobacter vinelandii
[TaxId: 354]
[46659] (1)
1cc5
complexed with hem
chain a
[15901]
Mono-heme c-type cytochrome ScyA [68948]
Shewanella putrefaciens
[TaxId: 24]
[68949] (2)
1kx7
complexed with hec
chain a
[68880]
1kx2
complexed with hec
chain a
[68878]
Cytochrome c551 [46660]
Pseudomonas stutzeri
[TaxId: 316]
[46661] (3)
1fi3
complexed with hec; mutant
chain a
[59846]
1cor
complexed with hem
chain a
[15903]
1cch
complexed with hem
chain a
[15902]
Pseudomonas aeruginosa
[TaxId: 287]
[46662] (4)
451c
complexed with hem
chain a
[15904]
351c
complexed with hem
chain a
[15905]
1dvv
complexed with hem; mutant
chain a
[15906]
2pac
complexed with hem
chain a
[15907]
Paracoccus denitrificans
[TaxId: 266]
[46663] (11)
2gc7
automatically matched to d1mg2d_
complexed with hem, na, trq
region d:1-147
[134957]
2gc7
automatically matched to d1mg2d_
complexed with hem, na, trq
region h:1-147
[134961]
2gc7
automatically matched to d1mg2d_
complexed with hem, na, trq
region l:1-147
[134965]
2gc7
automatically matched to d1mg2d_
complexed with hem, na, trq
region p:1-147
[134969]
2gc4
automatically matched to d1mg2d_
complexed with cu, hem, na, trq
region d:1-147
[134937]
2gc4
automatically matched to d1mg2d_
complexed with cu, hem, na, trq
region h:1-147
[134941]
2gc4
automatically matched to d1mg2d_
complexed with cu, hem, na, trq
region l:1-147
[134945]
2gc4
automatically matched to d1mg2d_
complexed with cu, hem, na, trq
region p:1-147
[134949]
1mg2
complexed with cu, hem, na, po4, trq; mutant
chain d
[79062]
chain h
[79066]
chain l
[79070]
chain p
[79074]
1mg3
complexed with cu, hem, na, po4, trw; mutant
chain d
[79078]
chain h
[79082]
chain l
[79086]
chain p
[79090]
2mta
complexed with cu, hem, owq, po4
chain c
[15908]
Ectothiorhodospira halophila
[TaxId: 1053]
[46664] (1)
1gks
complexed with hem
chain a
[15909]
SHP, an oxygen binding cytochrome c [46667]
Rhodobacter sphaeroides
[TaxId: 1063]
[46668] (4)
1dw0
complexed with hem, so4
chain a
[15911]
chain b
[15912]
chain c
[15913]
1dw1
complexed with cyn, hem
chain a
[15914]
chain b
[15915]
chain c
[15916]
1dw3
complexed with hem
chain a
[15917]
chain b
[15918]
chain c
[15919]
1dw2
complexed with hem, no
chain a
[15920]
chain b
[15921]
chain c
[15922]
Cytochrome c'' [68950]
close homologue of SHP
Methylophilus methylotrophus, strain w3a1
[TaxId: 17]
[68951] (3)
1gu2
complexed with hec
chain a
[76348]
chain b
[76349]
1oae
complexed with gol, hec, so4
chain a
[92704]
chain b
[92705]
1e8e
complexed with hec
chain a
[64795]
p-Cresol methylhydroxylase, cytochrome c subunit [46669]
the other subunit is a flavoprotein
Pseudomonas putida
[TaxId: 303]
[46670] (4)
1wve
automatically matched to d1diqc_
complexed with acy, cl, fad, hem, trs
region c:602-675
[121335]
1wve
automatically matched to d1diqc_
complexed with acy, cl, fad, hem, trs
region d:602-675
[121336]
1diq
chain c
[15923]
chain d
[15924]
1dii
chain c
[15925]
chain d
[15926]
Cytochrome c-L (MoxG) [109645]
Methylobacterium extorquens
[TaxId: 408]
[109646] (1)
SQ
P14774
49-197
2c8s
automatically matched to d1umma_
complexed with ca, hem
region a:24-172
[130123]
Enter
search
key:
Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright
© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk