Structural Classification of Proteins
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Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 3.1 [TaxId: 10090]

SQ NA # natural chimera; best hits are: SQ P01751 (Ig heavy chain V region B1-8/186-2) and SQ P01864 (Ig gamma-2A chain C region secreted form)

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 3.1 [TaxId: 10090] [88551]
    SQ NA # natural chimera; best hits are: SQ P01751 (Ig heavy chain V region B1-8/186-2) and SQ P01864 (Ig gamma-2A chain C region secreted form)

PDB Entry Domains:

  1. 1wej picpicxrefxrefxrefxref
    part of anti-cytochrome c Fab E8
    complexed with ace, hem, zn
    1. region h:1-112 [20361] picpiclink
  2. 1a3r picpicxrefxrefxref
    part of Fab 8F5
    complexed with nh2
    1. region h:2-119 [19781] picpiclink
  3. 1cr9 picpicxrefxrefxref
    part of anti-prion Fab 3F4
    1. region h:1-110 [20431] picpiclink
  4. 12e8 picpicxrefxrefxref
    part of Fab 2E8 specific to the low density lipoprotein receptor binding region of apolipoprotein E
    1. region h:1-114 [20269] picpiclink
    2. region p:1-114 [20271] picpiclink
  5. 1dvf picpicxrefxrefxref
    part of Fv E5.2, anti-idiotopic antibody to D1.3
    CASP1
    complexed with zn
    1. chain d [20107] picpiclink
  6. 1gaf picpicxrefxrefxref
    part of humanized Fab 48G7
    complexed with npe
    1. region h:1-114 [20083] picpiclink
  7. 35c8 picpicxrefxrefxref
    part of catalytic Fab 5C8
    complexed with nox
    1. region h:1-113 [20297] picpiclink
  8. 1il1 picpicxrefxrefxref
    part of anti-HIV Fab G3-519
    1. region a:3-121 [62539] picpiclink
  9. 1aj7 picpicxrefxrefxref
    part of humanized Fab 48G7
    complexed with npe
    1. region h:1-114 [20085] picpiclink
  10. 2rcs picpicxrefxrefxref
    part of humanized Fab 48G7
    1. region h:1-114 [20087] picpiclink
  11. 1dzb picpicxrefxref
    part of anti-lysozyme scFv 1F9
    1. region a:1-117 [20488] picpiclink
    2. region b:1-117 [20490] picpiclink
  12. 1qok picpicxref
    part of anti-carcinoembryonic scFv MFE-23
    1. region a:27-147 [20492] picpiclink
  13. 25c8 picpicxrefxrefxref
    part of catalytic Fab 5C8
    complexed with gep
    1. region h:1-113 [20299] picpiclink
  14. 1qbl picpicxrefxrefxref
    part of anti-cytochrome c Fab E8
    1. region h:1-112 [20363] picpiclink
  15. 1k6q picpicxrefxrefxref
    part of anti-human tissue factor Fab D3
    1. region h:1-117 [72092] picpiclink
  16. 1qbm picpicxrefxrefxref
    part of anti-cytochrome c Fab E8
    1. region h:1-112 [20365] picpiclink
  17. 1hkl picpicxrefxrefxref
    part of humanized Fab 48G7
    1. region h:1-114 [20089] picpiclink
  18. 2ap2 picpicxref
    part of P-glycoprotein-specific scFv C219
    1. chain b [20179] picpiclink
    2. chain d [20181] picpiclink
  19. 1moe picpicxref
    part of anti-CEA scFv T84.66; VL to VH linkage: linker residues 112-119; assembles as a diabody
    complexed with so4
    1. region a:120-240 [85031] picpiclink
    2. region b:120-240 [85033] picpiclink
  20. 2bdn picpicxrefxref
    1. region h:1-117 [144985] picpiclink
  21. 1fgn picpicxrefxrefxref
    part of anti-human tissue factor Fab 5G9
    1. region h:1-117 [20217] picpiclink
  22. 1cu4 picpicxrefxrefxref
    part of anti-prion Fab 3F4
    1. region h:3-110 [20433] picpiclink
  23. 15c8 picpicxrefxrefxref
    part of catalytic Fab 5C8
    1. region h:1-113 [20301] picpiclink
  24. 1ap2 picpicxref
    part of P-glycoprotein-specific scFv C219
    1. chain b [20183] picpiclink
    2. chain d [20185] picpiclink
  25. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    complexed with na
    1. region b:2-114 [145221] picpiclink
  26. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to 2GSI B:2-114
    complexed with na
    1. region d:2-114 [145223] picpiclink
  27. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to 2GSI B:2-114
    complexed with na
    1. region f:2-114 [145225] picpiclink
  28. 2gsi picpicxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxrefxref
    automatically matched to 2GSI B:2-114
    complexed with na
    1. region h:2-114 [145227] picpiclink
  29. 1bbd picpicxrefxrefxref
    part of Fab 8F5
    complexed with so4
    1. region h:1-119 [19783] picpiclink
  30. 1jnl picpicxrefxrefxref
    part of anti-estradiol Fab 17E12E5
    1. region h:1-114 [66956] picpiclink
  31. 1jnn picpicxrefxrefxref
    part of anti-estradiol Fab 17E12E5
    complexed with est
    1. region h:1-114 [66960] picpiclink
  32. 1a5f picpicxrefxrefxref
    part of an anti-E-selectin Fab
    1. region h:1-120 [20303] picpiclink
  33. 1ahw picpicxrefxrefxrefxref
    part of anti-human tissue factor Fab 5G9
    1. region b:1-117 [20219] picpiclink
    2. region e:1-117 [20221] picpiclink
  34. 2hh0 picpicxrefxrefxref
    mutant
    1. region h:1-149 [136462] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk