Structural Classification of Proteins
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Protein: Immunoglobulin heavy chain variable domain, VH from Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

SQ P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin heavy chain variable domain, VH [88543]
    VH domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VH domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090] [88549]
    SQ P18527 # HV56_MOUSE Ig heavy chain V region 914; 90% sequence identity

PDB Entry Domains:

  1. 1jgu picpicxrefxrefxref
    part of catalytic Fab 1D4
    complexed with hbc, oh
    1. region h:1-113 [66688] picpiclink
  2. 1jgv picpicxrefxrefxref
    part of catalytic Fab 1D4
    1. region h:1-113 [66692] picpiclink
  3. 1l7t picpicxrefxrefxref
    part of anti-testosterone Fab 77
    1. region h:1-118 [77799] picpiclink
  4. 1ub5 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    part of anti-testosterone Fab 77
    complexed with spb
    1. region h:1-116 [99147] picpiclink
    2. region a:1-116 [99143] picpiclink
  5. 1lo0 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with bc1
    1. region y:1-119 [74121] picpiclink
    2. region h:1-119 [74115] picpiclink
  6. 1lo2 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with ox1
    1. region y:1-119 [74129] picpiclink
    2. region h:1-119 [74123] picpiclink
  7. 1i9j picpicxrefxrefxref
    part of anti-testosterone Fab
    complexed with tes
    1. region h:1-118 [71144] picpiclink
  8. 1lo3 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with an1
    1. region y:1-119 [74137] picpiclink
    2. region h:1-119 [74131] picpiclink
  9. 1ub6 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    1. region h:2-116 [99155] picpiclink
    2. region a:2-116 [99151] picpiclink
  10. 1fl3 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    complexed with spb
    1. region h:2-116 [20484] picpiclink
    2. region a:2-116 [20486] picpiclink
  11. 1i9i picpicxrefxrefxref
    part of anti-testosterone Fab
    1. region h:1-118 [71140] picpiclink
  12. 1lo4 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    1. region h:1-118 [74139] picpiclink
  13. 1kfa picpicxrefxrefxref
    part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
    complexed with ga4
    1. region h:2-121 [77361] picpiclink
    2. region i:3-121 [77363] picpiclink
  14. 1vpo picpicxrefxrefxref
    MQ P18527 P01863 # natural chimera; anti-testosterone antibody (Fab)
    complexed with tes
    1. region h:1-118 [113970] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk