Structural Classification of Proteins
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Protein: Immunoglobulin light chain kappa variable domain, VL-kappa from Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

SQ P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! SQ P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! SQ P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! SQ P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Immunoglobulin-like beta-sandwich [48725]
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily: Immunoglobulin [48726]
    link to SUPERFAMILY database - Superfamily
  5. Family: V set domains (antibody variable domain-like) [48727]
  6. Protein: Immunoglobulin light chain kappa variable domain, VL-kappa [88519]
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. Species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090] [88524]
    SQ P01631 #KV2G_MOUSE Ig kappa chain V-II region 26-10; 79% sequence identity ! SQ P06310 # KV2F_HUMAN IG KAPPA CHAIN V-II REGION RPMI 6410 PRECURSOR ! SQ P03976 # KV2E_MOUSE (P03976) Ig kappa chain V-II region 17S29.1 ! SQ P01642 21-115 # ! KV2G_MOUSE IG KAPPA CHAIN V-II REGION 26-10

PDB Entry Domains:

  1. 1mju picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    complexed with gol
    1. region l:1-107 [91304] picpiclink
  2. 1ncw picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with bez, gol
    1. region l:1-107 [85557] picpiclink
  3. 1ruk picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with act, bez, gol
    1. region l:1-107 [97861] picpiclink
  4. 1rup picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with bez, gol
    1. region l:1-107 [97873] picpiclink
  5. 1dlf picpicxref
    part of anti-dansyl Fv
    complexed with so4
    1. chain l [20382] picpiclink
  6. 1rum picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with 4ht, bez, gol
    1. region l:1-107 [97869] picpiclink
  7. 2dlf picpicxref
    part of anti-dansyl Fv
    1. chain l [20384] picpiclink
  8. 1rur picpicxrefxrefxref
    part of Diels-Alder catalytic Fab 13G5
    complexed with zn
    1. region l:1-107 [97881] picpiclink
  9. 1mj8 picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    complexed with gol, po4
    1. region l:1-107 [91292] picpiclink
  10. 1q72 picpicxrefxrefxref
    part of anti-cocaine Fab M82G2
    complexed with coc
    1. region l:1-107 [96016] picpiclink
  11. 1n4x picpicxref
    part of scFv 1695
    complexed with cl
    1. chain l [85326] picpiclink
    2. chain m [85327] picpiclink
  12. 1qyg picpicxrefxrefxref
    part of anti-cocaine Fab M82G2
    complexed with bcg
    1. region l:1-107 [96591] picpiclink
  13. 1jgu picpicxrefxrefxref
    part of catalytic Fab 1D4
    complexed with hbc, oh
    1. region l:1-107 [66690] picpiclink
  14. 1pz5 picpicxrefxrefxref
    part of Fab Sya/J6
    1. region a:1-107 [95401] picpiclink
  15. 1f3d picpicxrefxrefxref
    part of catalytic Fab 4B2
    complexed with so4, tpm
    1. region l:1-107 [20460] picpiclink
    2. region j:1-107 [20461] picpiclink
  16. 2ok0 picpicxrefxref
    automatically matched to 2OJZ L:1-107
    1. region l:1-107 [145722] picpiclink
  17. 1jgv picpicxrefxrefxref
    part of catalytic Fab 1D4
    1. region l:1-107 [66694] picpiclink
  18. 1rua picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with 4ht, act, bez, ghg, gol
    1. region l:1-107 [97857] picpiclink
  19. 1ruq picpicxrefxrefxref
    part of Diels-Alder catalytic Fab 13G5
    complexed with zn
    1. region l:1-107 [97877] picpiclink
  20. 1nqb picpicxref
    part of scFv trivalent antibody; N-terminal, VH domain is from B1-8 antibody (1A6U CH H); C-terminal, VL domain is from NQ11 antibody
    1. region a:121-233 [20043] picpiclink
    2. region c:121-233 [20045] picpiclink
  21. 1riu picpicxrefxrefxref
    part of anti-cocaine Fab M82G2
    complexed with rbe
    1. region l:1-107 [97520] picpiclink
  22. 1wz1 picpicxref
    automatically matched to d1dlfl_
    complexed with dns
    1. region l:1-113 [121477] picpiclink
  23. 1mjj picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    complexed with hal, so4
    1. region a:1-107 [91294] picpiclink
    2. region l:1-107 [91300] picpiclink
  24. 1kel picpicxrefxrefxref
    part of Fab 28B4
    complexed with aah
    1. region l:1-112 [20112] picpiclink
  25. 1a3l picpicxrefxrefxref
    part of Diels-Alder catalytic Fab 13G5
    complexed with cfc
    1. region l:1-107 [20240] picpiclink
  26. 1rfd picpicxrefxrefxref
    part of anti-cocaine Fab M82G2
    1. region l:1-107 [97374] picpiclink
  27. 1cr9 picpicxrefxrefxref
    part of anti-prion Fab 3F4
    1. region l:1-106a [20430] picpiclink
  28. 1yej picpicxrefxrefxref
    part of Fab D2.3
    complexed with pnp, zn
    1. region l:1-107 [20140] picpiclink
  29. 1f8t picpicxrefxrefxref
    part of anti-IL2 Fab LNKB-2
    1. region l:1-107 [59707] picpiclink
  30. 1riv picpicxrefxrefxref
    part of anti-cocaine Fab M82G2
    complexed with obe
    1. region l:1-107 [97524] picpiclink
  31. 1rul picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with 4ht, act, bez, ghg, gol
    1. region l:1-107 [97865] picpiclink
  32. 1yei picpicxrefxrefxref
    part of Fab D2.3
    complexed with pnp, zn
    1. region l:1-107 [20142] picpiclink
  33. 1qkz picpicxrefxrefxrefxref
    part of Fab MN14C11.6
    1. region l:1-107 [20136] picpiclink
  34. 1dsf picpicxref
    part of anticancer Fv B1; disulfide-stabilized
    mutant
    1. chain l [20246] picpiclink
  35. 1kn4 picpicxrefxrefxref
    part of Fab D2.3
    complexed with pde, zn
    1. region l:1-107 [72767] picpiclink
  36. 1yec picpicxrefxrefxref
    part of Fab D2.3
    complexed with pnb, zn
    1. region l:1-107 [20144] picpiclink
  37. 1kn2 picpicxrefxrefxref
    part of Fab D2.3
    complexed with pne, zn
    1. region l:1-107 [72762] picpiclink
  38. 1mie picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    1. region l:1-107 [91283] picpiclink
  39. 1l7t picpicxrefxrefxref
    part of anti-testosterone Fab 77
    1. region l:1-112 [77801] picpiclink
  40. 1yeg picpicxrefxrefxref
    part of Fab D2.5
    complexed with act, bpn, zn
    1. region l:1-107 [20154] picpiclink
  41. 1yef picpicxrefxrefxref
    part of Fab D2.5
    complexed with pnc, zn
    1. region l:1-107 [20152] picpiclink
  42. 1ub5 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    complexed with spb
    1. region l:1-113 [99149] picpiclink
    2. region b:1-113 [99145] picpiclink
  43. 1lo2 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with ox1
    1. region x:1-112 [74127] picpiclink
    2. region l:1-112 [74125] picpiclink
  44. 1lo0 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with bc1
    1. region x:1-112 [74119] picpiclink
    2. region l:1-112 [74117] picpiclink
  45. 1cfv picpicxref
    part of Fv 4155
    complexed with e3g, zn
    1. chain l [20160] picpiclink
  46. 1bfv picpicxref
    part of Fv 4155
    complexed with stg, zn
    1. chain l [20162] picpiclink
  47. 1yek picpicxrefxrefxref
    part of Fab D2.3
    complexed with pnp, zn
    1. region l:1-107 [20146] picpiclink
  48. 1flr picpicxrefxrefxref
    part of Fab 4-4-20
    complexed with flu
    1. region l:1-112 [19904] picpiclink
  49. 1tet picpicxrefxrefxref
    part of Fab TE33
    complexed with cit
    1. region l:1-107 [19902] picpiclink
  50. 1fl5 picpicxrefxrefxref
    part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
    complexed with so4; mutant
    1. region l:1-107 [65021] picpiclink
    2. region a:1-107 [65015] picpiclink
  51. 1keg picpicxrefxrefxref
    part of anti-photoproduct Fab 64M-2
    complexed with 64t, ni
    1. region l:1-107 [77347] picpiclink
  52. 1mh5 picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    part of anti-testosterone Fab 77
    complexed with hal, so4
    1. region a:1-107 [91266] picpiclink
    2. region l:1-107 [91272] picpiclink
  53. 1mj7 picpicxrefxrefxref
    part of the esterolytic Fab ms6-164
    complexed with hal
    1. region l:1-107 [91288] picpiclink
  54. 1i9j picpicxrefxrefxref
    part of anti-testosterone Fab
    complexed with tes
    1. region l:1-112 [71146] picpiclink
  55. 1kem picpicxrefxrefxref
    part of Fab 28B4
    1. region l:1-112 [20114] picpiclink
  56. 1yee picpicxrefxrefxref
    part of Fab D2.5
    complexed with pnb
    1. region l:1-107 [20156] picpiclink
  57. 1m7d picpicxrefxrefxref
    part of Fab specific for Y lipopolysaccharide
    complexed with 1na, raa, rae
    1. region a:1-108 [84861] picpiclink
  58. 1mre picpicxrefxrefxref
    part of Fab Jel 103
    complexed with gdp, imd, zn
    1. region l:1-108 [20018] picpiclink
  59. 1c1e picpicxrefxrefxref
    part of Diels-Alder catalytic Fab 1E9
    complexed with dmr, enh
    1. region l:1-112 [20238] picpiclink
  60. 1mrd picpicxrefxrefxref
    part of Fab Jel 103
    complexed with idp, imd, zn
    1. region l:1-108 [20016] picpiclink
  61. 1axt picpicxrefxrefxref
    part of catalytic Fab 33F12 with an aldolase activity
    1. region l:1-107 [20304] picpiclink
  62. 1lo3 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    complexed with an1
    1. region x:1-112 [74135] picpiclink
    2. region l:1-112 [74133] picpiclink
  63. 1t66 picpicxrefxrefxref
    complexed with flu
    1. region c:1-112 [106545] picpiclink
    2. region l:1-112 [106551] picpiclink
  64. 1ru9 picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with 4ht, act, bez, ghg, gol
    1. region l:1-107 [97853] picpiclink
  65. 2mpa picpicxrefxrefxref
    part of bactericidal Fab MN12H2 against Neisseria meningitidis
    complexed with cd, cyf, thc
    1. region l:1-112 [20356] picpiclink
  66. 1ktr picpicxref
    part of scFv 3d5
    mutant
    1. chain l [72993] picpiclink
  67. 1mrf picpicxrefxrefxref
    part of Fab Jel 103
    complexed with imd, oip, zn
    1. region l:1-108 [20020] picpiclink
  68. 1f90 picpicxrefxrefxref
    part of anti-IL2 Fab LNKB-2
    1. region l:1-107 [59711] picpiclink
  69. 2bfv picpicxref
    part of Fv 4155
    complexed with stg
    1. chain l [20164] picpiclink
  70. 1ub6 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    1. region l:2-113 [99157] picpiclink
    2. region b:2-113 [99153] picpiclink
  71. 2cgr picpicxrefxrefxref
    part of an anti-sweetener Fab
    complexed with gas
    1. region l:1-112 [19918] picpiclink
  72. 1yeh picpicxrefxrefxref
    part of Fab D2.5
    complexed with zn
    1. region l:1-107 [20158] picpiclink
  73. 1mrc picpicxrefxrefxref
    part of Fab Jel 103
    complexed with imd, so4, zn
    1. region l:1-108 [20022] picpiclink
  74. 1ucb picpicxrefxrefxref
    part of humanized Fab CBR96
    complexed with so4
    1. region l:4-108 [20100] picpiclink
  75. 1mnu picpicxrefxrefxref
    part of bactericidal Fab MN12H2 against Neisseria meningitidis
    complexed with cd1
    1. region l:1-112 [20358] picpiclink
  76. 2jel picpicxrefxrefxrefxref
    part of Fab JE142
    complexed with so4
    1. region l:1-108 [19978] picpiclink
  77. 1m7i picpicxrefxrefxref
    part of Fab specific for Y lipopolysaccharide
    complexed with nag, raa, rao
    1. region a:1-108 [84865] picpiclink
  78. 1ehl picpicxrefxrefxref
    part of anti-photoproduct Fab 64M-2
    complexed with 5ht
    1. region l:1-107 [20502] picpiclink
  79. 2h1p picpicxrefxrefxref
    part of polysaccharide binding antibody 2H1
    1. region l:1-113 [20190] picpiclink
  80. 1fl3 picpicxrefxrefxref
    part of blue fluorescent Fab 19G2
    complexed with spb
    1. region l:2-113 [20485] picpiclink
    2. region b:2-113 [20487] picpiclink
  81. 1i9i picpicxrefxrefxref
    part of anti-testosterone Fab
    1. region l:1-112 [71142] picpiclink
  82. 1nd0 picpicxrefxrefxref
    part of cationic cyclization catalytic Fab 4C6
    complexed with dp4, so4
    1. region a:1-107 [85559] picpiclink
    2. region c:1-107 [85563] picpiclink
    3. region e:1-107 [85567] picpiclink
    4. region g:1-107 [85571] picpiclink
  83. 1a4j picpicxrefxrefxref
    part of humanized Diels-Alder catalytic Fab; germline precursor
    1. region l:1-112 [20230] picpiclink
    2. region a:1-112 [20232] picpiclink
  84. 2ojz picpicxrefxrefxrefxref
    1. region l:1-107 [145718] picpiclink
  85. 2ojz picpicxrefxrefxrefxref
    automatically matched to 2OJZ L:1-107
    1. region m:1-107 [145720] picpiclink
  86. 1igj picpicxrefxrefxref
    part of Fab 26-10
    complexed with dgx
    1. region a:1-107 [19818] picpiclink
    2. region c:1-107 [19820] picpiclink
  87. 1plg picpicxrefxrefxref
    part of a polysialic acid-binding Fab
    1. region l:1-112 [20080] picpiclink
  88. 1mpa picpicxrefxrefxref
    part of bactericidal Fab MN12H2 against Neisseria meningitidis
    complexed with cd, cyf, thc
    1. region l:1-112 [20134] picpiclink
  89. 1igi picpicxrefxrefxref
    part of Fab 26-10
    1. region l:1-107 [19822] picpiclink
  90. 1cu4 picpicxrefxrefxref
    part of anti-prion Fab 3F4
    1. region l:1-106a [20432] picpiclink
  91. 1jp5 picpicxref
    part of scFv 1695; complexed with the epitope peptide from HIV-1 protease
    1. region a:1-112 [67001] picpiclink
    2. region b:1-112 [67003] picpiclink
  92. 2pcp picpicxrefxrefxref
    part of Fab 6B5
    complexed with 1pc
    1. region a:1-107 [20370] picpiclink
    2. region c:1-107 [20372] picpiclink
  93. 1a4k picpicxrefxrefxref
    part of humanized Diels-Alder catalytic Fab
    complexed with cd, fra
    1. region l:1-112 [20234] picpiclink
    2. region a:1-112 [20236] picpiclink
  94. 1fl6 picpicxrefxrefxref
    part of humanized catalytic Fab 28b4 with a sulfide oxidase activity
    complexed with aah; mutant
    1. region l:1-107 [65029] picpiclink
    2. region a:1-107 [65023] picpiclink
  95. 1lmk picpicxref
    part of scFv diabody L5MK16
    1. region a:201-312 [20035] picpiclink
    2. region c:201-312 [20037] picpiclink
    3. region e:201-312 [20039] picpiclink
    4. region g:201-312 [20041] picpiclink
  96. 1bln picpicxrefxrefxref
    part of anti-P-glycoprotein Fab MRK-16
    1. region a:1-107 [20330] picpiclink
    2. region c:1-107 [20332] picpiclink
  97. 1rmf picpicxrefxrefxref
    part of Fab R6.5
    1. region l:1-112 [20028] picpiclink
  98. 1clz picpicxrefxrefxref
    part of Fab MBR96
    complexed with fuc, gal, nag, non
    1. region l:1-108 [20104] picpiclink
  99. 1cly picpicxrefxrefxref
    part of humanized Fab CBR96
    complexed with fuc, gal, nag, non
    1. region l:3-108 [20102] picpiclink
  100. 1nbv picpicxrefxrefxref
    part of Fab BV04-01
    1. region l:1-112 [19898] picpiclink
  101. 1qfu picpicxrefxrefxrefxrefxref
    part of Influenza virus hemagglutinin-neutralizing Fab
    complexed with man, nag
    1. region l:1-106b [20292] picpiclink
  102. 1lo4 picpicxrefxrefxref
    part of retro Diels-Alder catalytic Fab 9D9
    1. region l:1-112 [74141] picpiclink
  103. 1kfa picpicxrefxrefxref
    part of anti-gibberellin A4 Fab 4-B8(8)/E9; conflict: annotated in PDB as human protein
    complexed with ga4
    1. region l:1-112 [77365] picpiclink
    2. region m:1-112 [77367] picpiclink
  104. 1nak picpicxrefxrefxref
    part of Fab 83.1 against HIV-1 gp120
    1. region l:1-107 [91757] picpiclink
    2. region m:1-107 [91759] picpiclink
  105. 1igf picpicxrefxrefxref
    part of Fab B13I2
    complexed with nag
    1. region l:1-107 [19812] picpiclink
    2. region m:1-107 [19814] picpiclink
  106. 1nld picpicxrefxrefxref
    part of Fab 1583
    1. region l:1-107 [20110] picpiclink
  107. 1ae6 picpicxrefxrefxref
    part of Fab CTM01
    1. region l:1-106a [20210] picpiclink
  108. 1dbj picpicxrefxrefxref
    part of Fab DB3
    complexed with ae2
    1. region l:1-107 [19800] picpiclink
  109. 1m71 picpicxrefxrefxref
    part of Fab specific for Y lipopolysaccharide
    1. region a:1-108 [84851] picpiclink
  110. 1yed picpicxrefxrefxref
    part of Fab D2.4
    complexed with pnb
    1. region l:1-107 [20148] picpiclink
    2. region a:1-107 [20150] picpiclink
  111. 1cbv picpicxrefxrefxref
    part of Fab BV04-01
    1. region l:1-112 [19900] picpiclink
  112. 1cl7 picpicxrefxrefxref
    part of Fab 1696 against HIV-1 protease
    1. region l:1-107 [20418] picpiclink
  113. 1dba picpicxrefxrefxref
    part of Fab DB3
    complexed with eoh
    1. region l:1-107 [19802] picpiclink
  114. 1dbb picpicxrefxrefxref
    part of Fab DB3
    complexed with str
    1. region l:1-107 [19798] picpiclink
  115. 1dbm picpicxrefxrefxref
    part of Fab DB3
    complexed with sih
    1. region l:1-107 [19804] picpiclink
  116. 2igf picpicxrefxrefxref
    part of Fab B13I2
    complexed with nag
    1. region l:1-107 [19816] picpiclink
  117. 1dbk picpicxrefxrefxref
    part of Fab DB3
    complexed with ano
    1. region l:1-107 [19806] picpiclink
  118. 2dbl picpicxrefxrefxref
    part of Fab DB3
    complexed with s5h
    1. region l:1-107 [19808] picpiclink
  119. 1fpt picpicxrefxrefxref
    part of neutralizing type 1 poliovirus Fab C3
    1. region l:1-108 [20030] picpiclink
  120. 1cgs picpicxrefxrefxref
    part of an anti-sweetener Fab
    1. region l:1-112 [19920] picpiclink
  121. 4fab picpicxrefxrefxref
    part of Fab 4-4-20
    complexed with fds, mpd
    1. region l:1-112 [19906] picpiclink
  122. 1mak picpic
    VL of antibody 26-10 only
    1. chain a [19825] picpiclink
  123. 1maj picpic
    VL of antibody 26-10 only
    1. chain a [19824] picpiclink
  124. 1s3k picpicxrefxrefxref
    MQ NA # artificial chimera
    complexed with fuc, gal, gol, nag
    1. region l:1-112 [105239] picpiclink
  125. 1uz8 picpicxrefxrefxref
    MQ P03976 P01837 # ! natural chimera
    complexed with fuc, gal, mag
    1. region a:1-106 [108166] picpiclink
    2. region l:1-106 [108172] picpiclink
  126. 1uz6 picpicxrefxrefxref
    MQ P03976 P01837 # ! natural chimera
    complexed with so4
    1. region e:1-106 [108150] picpiclink
    2. region l:1-106 [108156] picpiclink
    3. region m:1-106 [108158] picpiclink
    4. region v:1-106 [108162] picpiclink
  127. 1vpo picpicxrefxrefxref
    MQ P01631 P01837
    complexed with tes
    1. region l:1-112 [113972] picpiclink
  128. 1s5i picpicxrefxrefxref
    MQ P06310 P01837
    1. region l:1-107 [105274] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk