Structural Classification of Proteins
Superfamily: Composite domain of metallo-dependent hydrolases
this domain is interrupted by the catalytic beta/alpha barrel domain
uperfamily
Lineage:
Root:
scop
Class:
All beta proteins
[48724]
Fold:
Composite domain of metallo-dependent hydrolases
[51337]
pseudobarrel; mixed sheet of 7 strand folded upon itself and "buckled" by two beta-turns
Superfamily:
Composite domain of metallo-dependent hydrolases
[51338]
this domain is interrupted by the catalytic beta/alpha barrel domain
uperfamily
Families:
Cytosine deaminase
[69373] (1)
Cytosine deaminase [69374]
Escherichia coli
[TaxId: 562]
[69375] (8)
SQ
P25524
1ra0
complexed with fe, fpy; mutant
region a:4-55,a:376-426
[111756]
1rak
complexed with fe, fpy, gol; mutant
region a:4-55,a:376-426
[111761]
1r9z
complexed with fe, gol, mg; mutant
region a:4-55,a:376-426
[111754]
1ra5
complexed with fe, fpy, gol; mutant
region a:4-55,a:376-426
[111759]
1r9x
complexed with fe, gol, mg; mutant
region a:4-55,a:376-426
[111750]
1r9y
complexed with fe, gol, mg; mutant
region a:4-55,a:376-426
[111752]
1k6w
complexed with fe
region a:4-55,a:376-426
[68236]
1k70
complexed with fe, hpy
region a:4-55,a:376-426
[68249]
alpha-Subunit of urease
[51339] (3)
alpha-Subunit of urease [51340]
Klebsiella aerogenes
[TaxId: 28451]
[51341] (27)
1ejx
complexed with kcx, ni
region c:1002-1129,c:1423-1475
[83184]
1ejr
complexed with ni; mutant
region c:1002-1129,c:1423-1475
[28420]
1fwc
complexed with ni; mutant
region c:2-129,c:423-475
[28410]
1ejt
complexed with ni; mutant
region c:1002-1129,c:1423-1475
[28421]
1fwa
complexed with co3, ni; mutant
region c:2-129,c:423-475
[28408]
1fwd
complexed with ni; mutant
region c:2-129,c:423-475
[28411]
1fwb
complexed with ni; mutant
region c:2-129,c:423-475
[28409]
1fwi
complexed with ni; mutant
region c:2-129,c:423-475
[28407]
1fwf
complexed with ni; mutant
region c:2-129,c:423-475
[28406]
1ejw
complexed with ni
region c:1002-1129,c:1423-1475
[90455]
1fwg
complexed with ni; mutant
region c:2-129,c:423-475
[28413]
2kau
CASP1
complexed with cbx, ni
region c:2-129,c:423-475
[28412]
1fwh
complexed with ni; mutant
region c:2-129,c:423-475
[28414]
1eju
complexed with ni; mutant
region c:1002-1129,c:1423-1475
[28422]
1ejs
complexed with ni; mutant
region c:1002-1129,c:1423-1475
[28424]
1a5m
mutant
region c:2-129,c:423-475
[28423]
1fwe
complexed with hae, ni; mutant
region c:2-129,c:423-475
[28415]
1fwj
complexed with ni
region c:2-129,c:423-475
[28416]
1a5k
mutant
region c:2-129,c:423-475
[28425]
1a5l
mutant
region c:2-129,c:423-475
[28426]
1a5n
complexed with fmt, ni; mutant
region c:2-129,c:423-475
[28427]
1ejv
complexed with ni; mutant
region c:1002-1129,c:1423-1475
[28428]
1kra
region c:2-129,c:423-475
[28417]
1ef2
complexed with mn
region a:1002-1129,a:1423-1475
[28429]
1krc
complexed with co2, ni; mutant
region c:2-129,c:423-475
[28419]
1krb
complexed with co2, ni; mutant
region c:2-129,c:423-475
[28418]
1a5o
complexed with fmt, ni; mutant
region c:2-129,c:423-475
[28430]
Bacillus pasteurii
[TaxId: 1474]
[51342] (6)
4ubp
complexed with ace, hae, ni
region c:1-131,c:435-483
[28431]
1ubp
complexed with bme, cbx, ni
region c:1-131,c:435-483
[28432]
1ie7
complexed with ni, po4
region c:1-131,c:435-483
[62315]
2ubp
region c:1-131,c:435-483
[28433]
3ubp
region c:1-131,c:435-483
[28434]
1s3t
complexed with bo3, ni, so4
region c:1-131,c:435-483
[98462]
Helicobacter pylori
[TaxId: 210]
[69376] (2)
1e9y
complexed with hae, ni
region b:1-131,b:432-480
[64848]
1e9z
complexed with ni
region b:1-131,b:432-480
[64852]
Hydantoinase (dihydropyrimidinase)
[75044] (9)
D-hydantoinase [75045]
Thermus sp.
[TaxId: 275]
[75046] (2)
1gkp
complexed with epe, kcx, so4, zn
region a:2-54,a:390-459
[70231]
region b:2-54,b:390-459
[70233]
region c:2-54,c:390-459
[70235]
region d:2-54,d:390-459
[70237]
region e:2-54,e:390-459
[70239]
region f:2-54,f:390-459
[70241]
1gkq
complexed with kcx, zn
region a:2-54,a:390-459
[70243]
region b:2-54,b:390-459
[70245]
region c:2-54,c:390-459
[70247]
region d:2-54,d:390-459
[70249]
Bacillus stearothermophilus
[TaxId: 1422]
[75047] (1)
1k1d
complexed with kcx, zn
region a:1-52,a:385-460
[71979]
region b:1-52,b:385-460
[71981]
region c:1-52,c:385-460
[71983]
region d:1-52,d:385-460
[71985]
region e:1-52,e:385-460
[71987]
region f:1-52,f:385-460
[71989]
region g:1-52,g:385-460
[71991]
region h:1-52,h:385-460
[71993]
Burkholderia pickettii
[TaxId: 329]
[89437] (1)
1nfg
complexed with kcx, zn
region a:1-51,a:382-457
[85632]
region b:1-51,b:382-457
[85634]
region c:1-51,c:382-457
[85636]
region d:1-51,d:382-457
[85638]
Bacillus sp. AR9
[TaxId: 301298]
[141682] (2)
SQ
Q5DLU2
2-52,385-460
1yny
complexed with mn
region a:2-52,a:385-460
[123764]
1yny
automatically matched to 1YNY A:2-52,A:385-460
complexed with mn
region b:2-52,b:385-460
[123766]
L-hydantoinase [75048]
Arthrobacter aurescens
[TaxId: 43663]
[75049] (1)
1gkr
complexed with kcx, zn
region a:1-54,a:380-451
[70251]
region b:1-54,b:380-451
[70253]
region c:1-54,c:380-451
[70255]
region d:1-54,d:380-451
[70257]
Dihydropyrimidinase related protein-1 [102017]
Mouse (Mus musculus)
[TaxId: 10090]
[102018] (1)
1kcx
structural genomics; NYSGR target T-45
region a:15-66,a:401-490
[90953]
region b:15-66,b:401-490
[90955]
Dihydropyrimidine amidohydrolase Pyd2 [141683]
Yeast (Saccharomyces kluyveri)
[TaxId: 4934]
[141684] (12)
SQ
Q9P903
2-56,441-541
2fvk
automatically matched to 2FTY A:2-56,A:441-541
complexed with duc, zn
region a:2-56,a:441-541
[134204]
2fvk
automatically matched to 2FTY A:2-56,A:441-541
complexed with duc, zn
region b:2-56,b:441-541
[134206]
2fvk
automatically matched to 2FTY A:2-56,A:441-541
complexed with duc, zn
region c:2-56,c:441-541
[134208]
2fvk
automatically matched to 2FTY A:2-56,A:441-541
complexed with duc, zn
region d:2-56,d:441-541
[134210]
2fvm
automatically matched to 2FTY A:2-56,A:441-541
complexed with urp, zn
region a:2-56,a:441-541
[134212]
2fvm
automatically matched to 2FTY A:2-56,A:441-541
complexed with urp, zn
region b:2-56,b:441-541
[134214]
2fvm
automatically matched to 2FTY A:2-56,A:441-541
complexed with urp, zn
region c:2-56,c:441-541
[134216]
2fvm
automatically matched to 2FTY A:2-56,A:441-541
complexed with urp, zn
region d:2-56,d:441-541
[134218]
2fty
complexed with zn
region a:2-56,a:441-541
[134087]
2fty
automatically matched to 2FTY A:2-56,A:441-541
complexed with zn
region b:2-56,b:441-541
[134089]
2fty
automatically matched to 2FTY A:2-56,A:441-541
complexed with zn
region c:2-56,c:441-541
[134091]
2fty
automatically matched to 2FTY A:2-56,A:441-541
complexed with zn
region d:2-56,d:441-541
[134093]
Dictyostelium discoideum
[TaxId: 44689]
[141685] (1)
SQ
Q86LT2
7-59,394-490
2ftw
complexed with mli, zn
region a:7-59,a:394-490
[134083]
Two-domain dihydroorotase [141686]
Aquifex aeolicus
[TaxId: 63363]
[141687] (3)
SQ
O66990
1-55,366-422
1xrt
automatically matched to 1XRF A:1-55,A:366-422
complexed with zn
region a:1-55,a:366-422
[122258]
1xrt
automatically matched to 1XRF A:1-55,A:366-422
complexed with zn
region b:1-55,b:366-422
[122260]
1xrf
complexed with so4, zn
region a:1-55,a:366-422
[122254]
SAH/MTA deaminase-like
[82224] (5)
Hypothetical protein TM0936 [82225]
Thermotoga maritima
[TaxId: 2336]
[82226] (3)
1p1m
structural genomics
complexed with met, ni
region a:1-49,a:331-404
[87696]
1j6p
structural genomics
complexed with mse, ni
region a:-1-49,a:331-405
[77089]
2plm
automatically matched to d1j6pa1
complexed with sib, zn
region a:1-49,a:331-404
[149636]
Hypothetical protein GOS_1943094 [159334]
Environmental samples
[159335] (1)
2paj
complexed with zn
region a:10-69,a:406-484
[149344]
Guanine deaminase [159336]
Bradyrhizobium japonicum
[TaxId: 375]
[159337] (1)
SQ
Q89NG0
1-70,396-465
Blr3880
2ood
complexed with gun, zn
region a:3-72,a:398-467
[148921]
Human (Homo sapiens)
[TaxId: 9606]
[159338] (1)
SQ
Q9Y2T3
8-75,389-451
2uz9
complexed with xan, zn
region a:8-75,a:389-451
[152323]
Clostridium acetobutylicum
[TaxId: 1488]
[159339] (2)
SQ
Q97MB6
6-63,374-424
2i9u
complexed with fe, gol, gun
region a:9-66,a:377-427
[147572]
2i9u
automatically matched to 2I9U A:9-66,A:377-427
complexed with fe, gol, gun
region b:9-66,b:377-427
[147574]
Isoaspartyl dipeptidase
[89438] (1)
Isoaspartyl dipeptidase [89439]
Escherichia coli
[TaxId: 562]
[89440] (5)
SQ
P39377
1onw
complexed with cl, egl, kcx, mg, na, zn
region a:1-62,a:347-389
[87172]
region b:1-62,b:347-389
[87174]
1po9
complexed with zn
region a:1-62,a:347-388
[104199]
region b:1-62,b:347-388
[104201]
1onx
complexed with asp, lcx, zn
region a:1-62,a:347-389
[87176]
region b:1-62,b:347-389
[87178]
1pok
complexed with asn, so4, zn
region a:1-62,a:347-388
[104207]
region b:1-62,b:347-388
[104209]
1poj
complexed with ae1, zn
region a:1-62,a:347-388
[104203]
region b:1-62,b:347-388
[104205]
N-acetylglucosamine-6-phosphate deacetylase, NagA
[82227] (3)
N-acetylglucosamine-6-phosphate deacetylase, NagA [82228]
Bacillus subtilis
[TaxId: 1423]
[102019] (1)
1un7
complexed with 2pe, fe, glp
region a:3-57,a:359-394
[99657]
region b:3-57,b:359-394
[99659]
Thermotoga maritima
[TaxId: 2336]
[82229] (1)
TM0814
1o12
structural genomics
CASP5
complexed with fe, mse
region a:1-43,a:332-364
[80758]
region b:1-43,b:332-364
[80760]
Escherichia coli
[TaxId: 562]
[141688] (10)
SQ
P0AF18
1-53,351-382
1yrr
automatically matched to 1YMY A:1-53,A:351-382
complexed with gol, po4
region a:1-53,a:351-382
[123935]
1yrr
automatically matched to 1YMY A:1-53,A:351-382
complexed with gol, po4
region b:1-53,b:351-382
[123937]
2p53
automatically matched to d1ymya1
complexed with nng, zn; mutant
region a:1-53,a:351-382
[149231]
2p53
automatically matched to d1ymya1
complexed with nng, zn; mutant
region b:1-53,b:351-382
[149233]
2p50
automatically matched to d1ymya1
complexed with zn
region a:1-53,a:351-382
[149223]
2p50
automatically matched to d1ymya1
complexed with zn
region b:1-53,b:351-382
[149225]
2p50
automatically matched to d1ymya1
complexed with zn
region c:1-53,c:351-382
[149227]
2p50
automatically matched to d1ymya1
complexed with zn
region d:1-53,d:351-382
[149229]
1ymy
region a:1-53,a:351-382
[123708]
1ymy
automatically matched to 1YMY A:1-53,A:351-382
region b:1-53,b:351-382
[123710]
D-aminoacylase
[82230] (1)
N-acyl-D-aminoacid amidohydrolase [82231]
Alcaligenes faecalis
[TaxId: 511]
[82232] (8)
1m7j
complexed with act, zn
region a:7-61
[78732]
region a:420-480
[78733]
1rk6
complexed with act, cd, zn2
region a:7-61
[97599]
region a:420-480
[97600]
1v51
complexed with act, zn2
region a:7-61
[100318]
region a:420-480
[100319]
1v4y
complexed with act, zn2; mutant
region a:7-61
[100315]
region a:420-480
[100316]
1rjq
complexed with act, zn2; mutant
region a:7-61
[97575]
region a:420-480
[97576]
1rk5
complexed with act, cu, zn2; mutant
region a:7-61
[97596]
region a:420-480
[97597]
1rjp
complexed with act, cu, zn2
region a:7-61
[97572]
region a:420-480
[97573]
1rjr
complexed with act, zn2; mutant
region a:7-61
[97578]
region a:420-480
[97579]
Adenine deaminase
[141689] (1)
Putative adenine deaminase EF0837 [141690]
Enterococcus faecalis
[TaxId: 1351]
[141691] (1)
SQ
Q837K0
2-52,320-369
2ics
complexed with ade, lcx, zn
region a:4-54,a:322-371
[137241]
Zn-dependent arginine carboxypeptidase-like
[159340] (3)
Uncharacterized protein EAJ56179 [159341]
Unidentified organism
[TaxId: 32644]
[159342] (8)
94% identity to the Burkholderia phytofirmans ortholog Bphyt_2089 (SQ
B2T4I1
)
2r8c
complexed with zn
region a:2-57,a:369-414
[151698]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region b:2-57,b:369-414
[151700]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region c:2-57,c:369-414
[151702]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region d:2-57,d:369-414
[151704]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region e:2-57,e:369-414
[151706]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region f:2-57,f:369-414
[151708]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region g:2-57,g:369-414
[151710]
2r8c
automatically matched to 2R8C A:2-57,A:369-414
complexed with zn
region h:2-57,h:369-414
[151712]
Zn-dependent arginine carboxypeptidase [159343]
Unidentified organism
[TaxId: 32644]
[159344] (16)
3be7
complexed with arg, gol, mg
region a:3-56,a:360-400
[155163]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region b:4-56,b:360-398
[155165]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region c:5-56,c:360-398
[155167]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region d:4-56,d:360-398
[155169]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region e:5-56,e:360-398
[155171]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region f:4-56,f:360-398
[155173]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region g:5-56,g:360-398
[155175]
3be7
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, mg
region h:4-56,h:360-398
[155177]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region a:5-56,a:360-398
[157866]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region b:5-56,b:360-398
[157868]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region c:4-56,c:360-398
[157870]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region d:5-56,d:360-398
[157872]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region e:5-56,e:360-398
[157874]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region f:4-56,f:360-398
[157876]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region g:5-56,g:360-398
[157878]
3dug
automatically matched to 3BE7 A:3-56,A:360-400
complexed with arg, gol, zn
region h:5-56,h:360-398
[157880]
Xaa-Pro dipeptidase [159345]
Alteromonas macleodii
[TaxId: 28108]
[159346] (2)
2qs8
complexed with met, mg
region a:7-63,a:374-412
[151311]
2qs8
automatically matched to 2QS8 A:7-63,A:374-412
complexed with met, mg
region b:7-63,b:374-410
[151313]
Imidazolonepropionase-like
[159347] (4)
Imidazolonepropionase [159348]
Bacillus subtilis
[TaxId: 1423]
[159349] (4)
SQ
P42084
3-73,374-415
2bb0
complexed with act, zn
region a:3-73,a:374-415
[146129]
2bb0
automatically matched to 2BB0 A:3-73,A:374-415
complexed with act, zn
region b:3-73,b:374-415
[146131]
2g3f
automatically matched to 2BB0 A:3-73,A:374-415
complexed with izc, zn
region a:3-73,a:374-415
[147073]
2g3f
automatically matched to 2BB0 A:3-73,A:374-415
complexed with izc, zn
region b:3-73,b:374-415
[147075]
Agrobacterium tumefaciens
[TaxId: 358]
[159350] (4)
SQ
Q8U8Z6
15-77,379-418
2puz
complexed with cl, fe, mg, nig
region a:17-79,a:381-420
[149873]
2puz
automatically matched to 2PUZ A:17-79,A:381-420
complexed with cl, fe, mg, nig
region b:17-79,b:381-420
[149875]
2gok
complexed with cl, fe, gol, mg
region a:17-79,a:381-420
[147145]
2gok
automatically matched to 2GOK A:17-79,A:381-420
complexed with cl, fe, gol, mg
region b:17-79,b:381-420
[147147]
Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 [159351]
Environmental samples
[159352] (2)
marine metagenome
2q09
automatically matched to 2OOF A:3-65,A:367-407
complexed with di6, fe
region a:4-65,a:367-407
[149984]
2oof
complexed with fe
region a:3-65,a:367-407
[148924]
Uncharacterized protein BL1453 [159353]
Bifidobacterium longum
[TaxId: 216816]
[159354] (1)
SQ
Q8G4D5
7-68,393-448
2p9b
region a:9-70,a:395-450
[149333]
DR0824-like
[159355] (1)
Hypothetical protein DR0824 [159356]
Deinococcus radiodurans
[TaxId: 1299]
[159357] (1)
SQ
Q9RW45
34-90,399-418
2imr
complexed with zn
region a:34-90,a:399-418
[147734]
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Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
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© 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk