Structural Classification of Proteins
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Protein: N-acyl-D-aminoacid amidohydrolase, catalytic domain from Alcaligenes faecalis [TaxId: 511]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Metallo-dependent hydrolases [51556]
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
    link to SUPERFAMILY database - Superfamily
  5. Family: D-aminoacylase, catalytic domain [82264]
  6. Protein: N-acyl-D-aminoacid amidohydrolase, catalytic domain [82265]
    contains small a/b subdomain inserted after strand 7; unusual for the superfamily metal coordination by Cys
  7. Species: Alcaligenes faecalis [TaxId: 511] [82266]

PDB Entry Domains:

  1. 1m7j picpicxref
    complexed with act, zn
    1. region a:62-419 [78734] picpiclink
  2. 1rk6 picpicxref
    complexed with act, cd, zn2
    1. region a:62-419 [97601] picpiclink
  3. 1v51 picpicxref
    complexed with act, zn2
    1. region a:62-419 [100320] picpiclink
  4. 1v4y picpicxref
    complexed with act, zn2; mutant
    1. region a:62-419 [100317] picpiclink
  5. 1rjq picpicxref
    complexed with act, zn2; mutant
    1. region a:62-419 [97577] picpiclink
  6. 1rk5 picpicxref
    complexed with act, cu, zn2; mutant
    1. region a:62-419 [97598] picpiclink
  7. 1rjp picpicxref
    complexed with act, cu, zn2
    1. region a:62-419 [97574] picpiclink
  8. 1rjr picpicxref
    complexed with act, zn2; mutant
    1. region a:62-419 [97580] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk