Structural Classification of Proteins
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Protein: Rhinovirus coat proteins from Human rhinovirus 16, (HRV-16) [TaxId: 31708]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634]
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. Protein: Rhinovirus coat proteins [49670]
  7. Species: Human rhinovirus 16, (HRV-16) [TaxId: 31708] [49672]

PDB Entry Domains:

  1. 1aym picpic
    complexed with dao, myr, zn; mutant
    1. chain 4,2 [83036] picpiclink
    2. chain 3 [23521] picpiclink
    3. chain 1 [23519] picpiclink
  2. 1nd2 picpic
    complexed with myr, zn
    1. chain d,b [91809] picpiclink
    2. chain c [91811] picpiclink
    3. chain a [91810] picpiclink
  3. 1qju picpic
    complexed with myr, w01, zn; mutant
    1. chain 4,2 [83105] picpiclink
    2. chain 3 [23524] picpiclink
    3. chain 1 [23522] picpiclink
  4. 1ncr picpic
    complexed with myr, w11, zn
    1. chain d,b [91805] picpiclink
    2. chain c [91807] picpiclink
    3. chain a [91806] picpiclink
  5. 1qjy picpic
    complexed with myr, w03, zn; mutant
    1. chain 4,2 [83107] picpiclink
    2. chain 3 [23527] picpiclink
    3. chain 1 [23525] picpiclink
  6. 1c8m picpic
    complexed with w11, zn
    1. chain 4,2 [83044] picpiclink
    2. chain 3 [23530] picpiclink
    3. chain 1 [23528] picpiclink
  7. 1ayn picpic
    complexed with dao, myr, zn; mutant
    1. chain 4,2 [83037] picpiclink
    2. chain 3 [23536] picpiclink
    3. chain 1 [23534] picpiclink
  8. 1nd3 picpic
    complexed with w11, zn
    1. chain d,b [91812] picpiclink
    2. chain c [91814] picpiclink
    3. chain a [91813] picpiclink
  9. 1qjx picpic
    complexed with myr, w02, zn; mutant
    1. chain 4,2 [83106] picpiclink
    2. chain 3 [23533] picpiclink
    3. chain 1 [23531] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk