Structural Classification of Proteins
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Protein: Rhinovirus coat proteins from Human rhinovirus A 1A (HRV-1A) [TaxId: 12134]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634]
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. Protein: Rhinovirus coat proteins [49670]
  7. Species: Human rhinovirus A 1A (HRV-1A) [TaxId: 12134] [49673]

PDB Entry Domains:

  1. 1r1a picpic
    complexed with suc
    1. chain 4,2 [83111] picpiclink
    2. chain 3 [23539] picpiclink
    3. chain 1 [23537] picpiclink
  2. 2hwd picpic
    complexed with w91
    1. chain 4,2 [83133] picpiclink
    2. chain 3 [23542] picpiclink
    3. chain 1 [23540] picpiclink
  3. 2hwf picpic
    complexed with jen
    1. chain 4,2 [83135] picpiclink
    2. chain 3 [23548] picpiclink
    3. chain 1 [23546] picpiclink
  4. 2hwe picpic
    complexed with w54
    1. chain 4,2 [83134] picpiclink
    2. chain 3 [23545] picpiclink
    3. chain 1 [23543] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk