Structural Classification of Proteins
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Protein: Calicivirus capsid protein from Norwalk virus [TaxId: 11983]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Caliciviridae-like VP [88637]
  6. Protein: Calicivirus capsid protein [63691]
    includes the P (protruding) domain of complex beta-structure containing a beta-barrel similar to the second domain of EF-TU
  7. Species: Norwalk virus [TaxId: 11983] [63692]

PDB Entry Domains:

  1. 1ihm picpic
    1. chain a [62385] picpiclink
    2. chain b [62386] picpiclink
    3. chain c [62387] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk