Structural Classification of Proteins
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Family: Nodaviridae-like VP

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Nodaviridae-like VP [88638]

Protein Domains:

  1. Alphanodavirus capsid protein [49648]
    1. Black beetle virus [TaxId: 12285] [49649] (1)
      1. 2bbv picpic
        protein/RNA complex; complexed with ca
        1. chain a [23323] picpiclink
        2. chain b [23324] picpiclink
        3. chain c [23325] picpiclink
    2. Nodamura virus [TaxId: 12288] [49650] (1)
      1. 1nov picpic
        1. chain a [23326] picpiclink
        2. chain b [23327] picpiclink
        3. chain c [23328] picpiclink
    3. Pariacoto virus [TaxId: 103782] [49651] (1)
      1. 1f8v picpic
        complexed with ca, so4
        1. chain a,d [23329] picpiclink
        2. chain b,e [23330] picpiclink
        3. chain c,f [23331] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk