Structural Classification of Proteins
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Family: Tombusviridae-like VP

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: Positive stranded ssRNA viruses [88633]
    link to SUPERFAMILY database - Superfamily
  5. Family: Tombusviridae-like VP [88643]

Protein Domains:

  1. Necrovirus coat protein [49637]
    1. TNV (Tobacco necrosis virus) [TaxId: 12054] [49638] (1)
      1. 1c8n picpic
        complexed with ca
        1. chain a [23308] picpiclink
        2. chain b [23309] picpiclink
        3. chain c [23310] picpiclink
  2. Tombusvirus coat protein [49633]
    1. TBSV (Tomato bushy stunt virus) [TaxId: 12145] [49634] (1)
      1. 2tbv picpic
        complexed with ca
        1. chain a [23302] picpiclink
        2. chain b [23303] picpiclink
        3. chain c [23304] picpiclink
  3. Carmovirus coat protein [89228]
    1. CarMV (Carnation mottle virus) [TaxId: 11986] [89229] (1)
      1. 1opo picpic
        complexed with ca, so4
        1. chain a [87240] picpiclink
        2. chain b [87241] picpiclink
        3. chain c [87242] picpiclink
  4. Sobemovirus coat protein [88644]
    1. SMV (Sesbania mosaic virus) [TaxId: 12558] [49624] (7)
      SQ Q9EB06
      1. 1smv picpic
        complexed with ca
        1. chain a [23288] picpiclink
        2. chain b [23289] picpiclink
        3. chain c [23290] picpiclink
      2. 2vq0 picpic
        automatically matched to d1vaka_
        complexed with ca; mutant
        1. region a:73-268 [153422] picpiclink
      3. 2vq0 picpic
        automatically matched to d1vaka_
        complexed with ca; mutant
        1. region b:73-268 [153423] picpiclink
      4. 2vq0 picpic
        automatically matched to d1vaka_
        complexed with ca; mutant
        1. region c:73-268 [153424] picpiclink
      5. 1vak picpic
        deletion mutant
        1. chain a [113600] picpiclink
      6. 1vb4 picpic
        deletion mutant
        1. chain a [113603] picpiclink
      7. 1vb2 picpic
        deletion mutant
        1. chain a [113602] picpiclink
    2. SBMV (Southern bean mosaic virus), cow pea strain [TaxId: 12139] [49632] (1)
      1. 4sbv picpic
        complexed with ca
        1. chain a [23299] picpiclink
        2. chain b [23300] picpiclink
        3. chain c [23301] picpiclink
    3. RYMV (Rice yellow mottle virus) [TaxId: 31744] [49626] (1)
      1. 1f2n picpic
        complexed with ca
        1. chain a [23291] picpiclink
        2. chain b [23292] picpiclink
        3. chain c [23293] picpiclink
    4. Cocksfoot mottle virus [TaxId: 40979] [82010] (1)
      1. 1ng0 picpic
        complexed with ca
        1. chain a [80475] picpiclink
        2. chain b [80476] picpiclink
        3. chain c [80477] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk