Structural Classification of Proteins
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Superfamily: PHM/PNGase F

members of this superfamily bind peptide substrates
duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits
link to SUPERFAMILY database - Superfamily

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: PHM/PNGase F [49742]
    members of this superfamily bind peptide substrates
    duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits
    link to SUPERFAMILY database - Superfamily

Families:

  1. Glycosyl-asparaginase [49743] (1)
    1. Peptide:N-glycosidase F, PNGase F [49744]
      1. Flavobacterium meningosepticum [TaxId: 238] [49745] (3)
        1. 1pgs picpic
          1. region a:4-140 [23653] picpiclink
          2. region a:141-314 [23654] picpiclink
        2. 1pnf picpic
          complexed with nag, so4
          1. region a:1-140 [23655] picpiclink
          2. region a:141-314 [23656] picpiclink
        3. 1png picpic
          1. region a:5-140 [23657] picpiclink
          2. region a:141-314 [23658] picpiclink
  2. Peptidylglycine alpha-hydroxylating monooxygenase, PHM [49746] (1)
    1. Peptidylglycine alpha-hydroxylating monooxygenase, PHM [63402]
      1. Rat (Rattus norvegicus) [TaxId: 10116] [49748] (12)
        1. 1yi9 picpic
          automatically matched to d1opma1
          complexed with cu, gol; mutant
          1. region a:47-198 [123276] picpiclink
        2. 1yi9 picpic
          automatically matched to d1sdwa2
          complexed with cu, gol; mutant
          1. region a:199-355 [123277] picpiclink
        3. 1sdw picpic
          complexed with cu, gol, iyt, ni, o2
          1. region a:45-198 [98810] picpiclink
          2. region a:199-356 [98811] picpiclink
        4. 1phm picpic
          complexed with azi, cu, gol
          1. region a:45-198 [59015] picpiclink
          2. region a:199-354 [59016] picpiclink
        5. 1yjk picpic
          automatically matched to d1opma1
          complexed with cu, gol
          1. region a:50-198 [123423] picpiclink
        6. 1yjk picpic
          automatically matched to d1sdwa2
          complexed with cu, gol
          1. region a:199-355 [123424] picpiclink
        7. 3phm picpic
          complexed with 1cu, azi, cu, gol, ni1
          1. region a:45-198 [59060] picpiclink
          2. region a:199-354 [59061] picpiclink
        8. 1opm picpic
          complexed with 1cu, azi, cu, gol, iyg, ni1
          1. region a:45-198 [59013] picpiclink
          2. region a:199-354 [59014] picpiclink
        9. 1yip picpic
          automatically matched to d1opma1
          complexed with cu
          1. region a:45-198 [123328] picpiclink
        10. 1yip picpic
          automatically matched to d1sdwa2
          complexed with cu
          1. region a:199-355 [123329] picpiclink
        11. 1yjl picpic
          automatically matched to d1opma1
          mutant
          1. region a:50-198 [123425] picpiclink
        12. 1yjl picpic
          automatically matched to d1sdwa2
          mutant
          1. region a:199-355 [123426] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk