Structural Classification of Proteins
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Protein: Peptide:N-glycosidase F, PNGase F from Flavobacterium meningosepticum [TaxId: 238]

Lineage:

  1. Root: scop
  2. Class: All beta proteins [48724]
  3. Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632]
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily: PHM/PNGase F [49742]
    members of this superfamily bind peptide substrates
    duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits
    link to SUPERFAMILY database - Superfamily
  5. Family: Glycosyl-asparaginase [49743]
  6. Protein: Peptide:N-glycosidase F, PNGase F [49744]
  7. Species: Flavobacterium meningosepticum [TaxId: 238] [49745]

PDB Entry Domains:

  1. 1pgs picpic
    1. region a:4-140 [23653] picpiclink
    2. region a:141-314 [23654] picpiclink
  2. 1pnf picpic
    complexed with nag, so4
    1. region a:1-140 [23655] picpiclink
    2. region a:141-314 [23656] picpiclink
  3. 1png picpic
    1. region a:5-140 [23657] picpiclink
    2. region a:141-314 [23658] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk