Structural Classification of Proteins
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Family: D-aminoacylase, catalytic domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: Metallo-dependent hydrolases [51556]
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
    link to SUPERFAMILY database - Superfamily
  5. Family: D-aminoacylase, catalytic domain [82264]

Protein Domains:

  1. N-acyl-D-aminoacid amidohydrolase, catalytic domain [82265]
    contains small a/b subdomain inserted after strand 7; unusual for the superfamily metal coordination by Cys
    1. Alcaligenes faecalis [TaxId: 511] [82266] (8)
      1. 1m7j picpicxref
        complexed with act, zn
        1. region a:62-419 [78734] picpiclink
      2. 1rk6 picpicxref
        complexed with act, cd, zn2
        1. region a:62-419 [97601] picpiclink
      3. 1v51 picpicxref
        complexed with act, zn2
        1. region a:62-419 [100320] picpiclink
      4. 1v4y picpicxref
        complexed with act, zn2; mutant
        1. region a:62-419 [100317] picpiclink
      5. 1rjq picpicxref
        complexed with act, zn2; mutant
        1. region a:62-419 [97577] picpiclink
      6. 1rk5 picpicxref
        complexed with act, cu, zn2; mutant
        1. region a:62-419 [97598] picpiclink
      7. 1rjp picpicxref
        complexed with act, cu, zn2
        1. region a:62-419 [97574] picpiclink
      8. 1rjr picpicxref
        complexed with act, zn2; mutant
        1. region a:62-419 [97580] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk