Structural Classification of Proteins
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Protein: Diaminopimelate decarboxylase LysA from Archaeon Methanococcus jannaschii [TaxId: 2190]

SQ Q58497

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: PLP-binding barrel [51419]
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
    link to SUPERFAMILY database - Superfamily
  5. Family: Alanine racemase-like, N-terminal domain [51420]
  6. Protein: Diaminopimelate decarboxylase LysA [89457]
    most similar to eukaryotic ODC
  7. Species: Archaeon Methanococcus jannaschii [TaxId: 2190] [110347]
    SQ Q58497

PDB Entry Domains:

  1. 1twi picpicxref
    Structural genomics target
    complexed with lys, mg, plp
    1. region a:50-313 [107400] picpiclink
    2. region b:50-313 [107402] picpiclink
    3. region c:50-313 [107404] picpiclink
    4. region d:50-313 [107406] picpiclink
  2. 1tuf picpicxref
    Structural genomics target
    complexed with az1
    1. region a:50-313 [107336] picpiclink
    2. region b:50-313 [107338] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk