Structural Classification of Proteins
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Family: Alanine racemase-like, N-terminal domain

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: TIM beta/alpha-barrel [51350]
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily: PLP-binding barrel [51419]
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
    link to SUPERFAMILY database - Superfamily
  5. Family: Alanine racemase-like, N-terminal domain [51420]

Protein Domains:

  1. Alanine racemase [51421]
    1. Bacillus stearothermophilus [TaxId: 1422] [51422] (8) picpic
    2. Pseudomonas aeruginosa [TaxId: 287] [110345] (1) picpic
      SQ Q9HTQ2
    3. Streptomyces lavendulae [TaxId: 1914] [110346] (3) picpic
      SQ Q65YW7
  2. Eukaryotic ornithine decarboxylase [51423]
    1. Human (Homo sapiens) [TaxId: 9606] [51424] (1) picpic
    2. Mouse (Mus musculus) [TaxId: 10090] [51425] (1) picpic
    3. Trypanosoma brucei [TaxId: 5691] [51426] (5) picpic
      SQ P07805
  3. Diaminopimelate decarboxylase LysA [89457]
    most similar to eukaryotic ODC
    1. Mycobacterium tuberculosis [TaxId: 1773] [89458] (2) picpic
    2. Escherichia coli [TaxId: 562] [102048] (2) picpic
    3. Archaeon Methanococcus jannaschii [TaxId: 2190] [110347] (2) picpic
      SQ Q58497
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk