Structural Classification of Proteins
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Protein: Diaminopimelic acid dehydrogenase (DAPDH) from Corynebacterium glutamicum [TaxId: 1718]

Lineage:

  1. Root: scop
  2. Class: Alpha and beta proteins (a/b) [51349]
    Mainly parallel beta sheets (beta-alpha-beta units)
  3. Fold: NAD(P)-binding Rossmann-fold domains [51734]
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. Superfamily: NAD(P)-binding Rossmann-fold domains [51735]
    link to SUPERFAMILY database - Superfamily
  5. Family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain [51800]
    family members also share a common alpha+beta fold in C-terminal domain
  6. Protein: Diaminopimelic acid dehydrogenase (DAPDH) [51819]
  7. Species: Corynebacterium glutamicum [TaxId: 1718] [51820]

PDB Entry Domains:

  1. 1f06 picpicxref
    complexed with 2np, ndp
    1. region a:1-118,a:269-320 [59556] picpiclink
    2. region b:501-618,b:769-820 [59558] picpiclink
  2. 3dap picpicxref
    complexed with da3, ndp
    1. region a:1-118,a:269-320 [30051] picpiclink
    2. region b:1-118,b:269-320 [30052] picpiclink
  3. 2dap picpicxref
    complexed with api
    1. region a:1-118,a:269-320 [30050] picpiclink
  4. 1dap picpicxref
    complexed with act, ndp
    1. region a:1-118,a:269-320 [30053] picpiclink
    2. region b:1-118,b:269-320 [30054] picpiclink
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MRC site Generated from scop database 1.75 with scopm 1.101 on Wed Jun 3 10:42:06 2009
Copyright © 1994-2009 The scop authors / scop@mrc-lmb.cam.ac.uk